[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeZmjMx/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeZmjMx/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeZmjMx/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T17:36:23.931573Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:23.932893Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:23.932927Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:23.932933Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:23.932939Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXeZmjMx'
[2026-06-08T17:36:23.932943Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:23.932950Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:23.932953Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:23.932957Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T17:36:23.932960Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:23.932964Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:23.932968Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:23.932972Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:23.932976Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:23.934050Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:23.934485Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:23.940920Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:23.941789Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:23.942197Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:23.942447Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:23.942675Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.943118Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.943653Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.943831Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.944227Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.947354Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.947589Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.947907Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:23.948002Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948088Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948210Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948273Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948382Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948443Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948554Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948618Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948726Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948800Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948908Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.948974Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.949082Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.949210Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.949320Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.949386Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.949495Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.949557Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.949925Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950253Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950400Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950464Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950571Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950636Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950758Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950878Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950999Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.951066Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.951179Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.951242Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.951543Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.951927Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.952047Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.952112Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.952222Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.952291Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.952894Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.952971Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.953328Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.953738Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.953928Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.953996Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954109Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954180Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954292Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954359Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954474Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954535Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954648Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954713Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954838Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.954960Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.955339Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.955744Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.956079Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.956605Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.957183Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.957253Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.972972Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.973321Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.973400Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.973594Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.973665Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.973754Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.973819Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.973927Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.974002Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.976115Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:23.976976Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.977831Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.978204Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.979608Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.980851Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.984497Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:23.985636Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.986375Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.987427Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.988695Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.993165Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:23.997616Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:24.002016Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:24.003821Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:24.007797Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:24.009805Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:24.106688Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.106795Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.106819Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.107560Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.108351Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.109066Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.113328Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:24.115286Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:24.116850Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:24.176512Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.177440Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.181814Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:24.844738Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.845622Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.849279Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:25.161334Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.162208Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.166245Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:25.377586Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.378473Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.382476Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:25.744130Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.745204Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.748642Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:25.761408Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.762316Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.765521Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:25.876698Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.877802Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.881415Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:25.942282Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.943298Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.946825Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:26.007659Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.008724Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.012257Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:26.073224Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.074438Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.077768Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:26.138782Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.139825Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.143522Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:26.354647Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.355634Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.359099Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:26.570507Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.571472Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.575171Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:26.736340Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.737271Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.740952Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:26.801770Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.802908Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.806372Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:26.867503Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.868485Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.871595Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:26.932669Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.933560Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.936806Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:27.107001Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:27.147976Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.148070Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.148110Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.148959Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.149442Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.150127Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.154273Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:27.155535Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:27.156653Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:27.215819Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.215914Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.216844Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.217415Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.221384Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:27.222103Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:27.281473Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.282399Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.286109Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:27.396811Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.397509Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.401508Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:27.863021Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.863698Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.867252Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:27.928392Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.929015Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.932216Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:27.961251Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.961823Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.964525Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:28.026032Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.026680Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.030373Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:28.292629Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.293296Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.297098Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:28.358173Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.358753Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.362394Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:28.423011Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.423627Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.426284Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.426973Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.427633Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:28.430009Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:28.491188Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.491727Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.494914Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:28.656552Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.657192Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.660542Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:28.721871Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.722438Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.725854Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:28.730687Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.731183Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.734461Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:28.763185Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.763741Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.767107Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:28.767867Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.768341Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.771050Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:28.832456Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.832539Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.833005Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.833616Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.837525Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:28.839004Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:28.898395Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.898476Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.898930Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.899585Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.903191Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:28.904156Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:28.932111Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.932605Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.935705Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:28.948975Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.949386Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.952381Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:29.013685Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.013775Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.014189Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.014771Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.017312Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.017746Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:29.019269Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.020960Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:29.022047Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:29.051613Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.051984Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.052410Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.054168Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.055303Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:29.057094Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.058122Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:29.089010Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.089084Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.092609Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.092997Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.096601Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:29.157251Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.321435Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.321847Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.324799Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:29.354037Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.518155Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.518544Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.521409Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:29.582689Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.047410Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.047780Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.050655Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:30.079949Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.080327Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.081913Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.082960Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:30.145965Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.146234Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.146349Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.147003Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.149171Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.149604Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:30.152509Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:30.153375Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:30.182729Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.182796Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.182818Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.182992Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.183564Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.186246Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:30.187217Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:30.216382Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.216456Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.216620Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.219240Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:30.248814Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.571362Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:42.821771Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:42.821771Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] 
[2026-06-08T17:36:42.821771Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:42.821856Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] 
[2026-06-08T17:36:42.821863Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:42.821870Z] [nf-437ee324dc5b8c302041c9e6a41e49a9-94de3-vcsn8] [610_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec