.command.sh - Workdir - DAQ:SAMTOOLS_IDXSTATS_COUNT (HCC1395_BL)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/d4fe1fa7385372735afad7c48edb85/.command.sh
Size: 270 bytes
Task: DAQ:SAMTOOLS_IDXSTATS_COUNT (HCC1395_BL)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bai_mapped_count.py HCC1395_BL.recalibrated.bam.bai > HCC1395_BL.mapped_count.txt

cat <<-END_VERSIONS > versions.yml
"DAQ:SAMTOOLS_IDXSTATS_COUNT":
    python: $(python3 --version | sed 's/Python //')
    bai_mapped_count: 1.0.0
END_VERSIONS