ReadGroup,CovariateValue,CovariateName,EventType,Observations,Errors,EmpiricalQuality,AverageReportedQuality,Accuracy,Recalibration
REGRESSION.HCC1395_tumor.L001,AA,Context,Base Substitution,527509,1342.95,26.00,29.67,-3.67,Before
REGRESSION.HCC1395_tumor.L001,AAA,Context,Base Insertion,179094,30.42,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L001,AAA,Context,Base Deletion,179094,85.83,41.00,45.00,-4.00,Before
REGRESSION.HCC1395_tumor.L001,AAC,Context,Base Insertion,86062,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AAC,Context,Base Deletion,86062,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AAG,Context,Base Insertion,135271,2.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AAG,Context,Base Deletion,135271,5.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AAT,Context,Base Insertion,101892,0.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AAT,Context,Base Deletion,101892,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AC,Context,Base Substitution,358870,1129.35,25.00,28.71,-3.71,Before
REGRESSION.HCC1395_tumor.L001,ACA,Context,Base Insertion,132953,3.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ACA,Context,Base Deletion,132953,5.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ACC,Context,Base Insertion,105196,2.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ACC,Context,Base Deletion,105196,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ACG,Context,Base Insertion,20515,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ACG,Context,Base Deletion,20515,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ACT,Context,Base Insertion,105512,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ACT,Context,Base Deletion,105512,3.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AG,Context,Base Substitution,564754,521.65,30.00,31.85,-1.85,Before
REGRESSION.HCC1395_tumor.L001,AGA,Context,Base Insertion,152328,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AGA,Context,Base Deletion,152328,4.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AGC,Context,Base Insertion,140939,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AGC,Context,Base Deletion,140939,3.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AGG,Context,Base Insertion,164284,4.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AGG,Context,Base Deletion,164284,3.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AGT,Context,Base Insertion,103827,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AGT,Context,Base Deletion,103827,5.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,AT,Context,Base Substitution,370416,470.28,29.00,32.20,-3.20,Before
REGRESSION.HCC1395_tumor.L001,ATA,Context,Base Insertion,74572,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ATA,Context,Base Deletion,74572,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ATC,Context,Base Insertion,79006,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ATC,Context,Base Deletion,79006,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ATG,Context,Base Insertion,115535,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ATG,Context,Base Deletion,115535,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ATT,Context,Base Insertion,109130,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,ATT,Context,Base Deletion,109130,2.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CA,Context,Base Substitution,598019,1228.15,27.00,30.04,-3.04,Before
REGRESSION.HCC1395_tumor.L001,CAA,Context,Base Insertion,113330,4.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CAA,Context,Base Deletion,113330,4.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CAC,Context,Base Insertion,125763,5.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CAC,Context,Base Deletion,125763,5.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CAG,Context,Base Insertion,214619,5.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CAG,Context,Base Deletion,214619,9.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CAT,Context,Base Insertion,111679,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CAT,Context,Base Deletion,111679,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CC,Context,Base Substitution,554237,1754.96,25.00,28.98,-3.98,Before
REGRESSION.HCC1395_tumor.L001,CCA,Context,Base Insertion,177783,2.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CCA,Context,Base Deletion,177783,2.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CCC,Context,Base Insertion,152202,5.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CCC,Context,Base Deletion,152202,5.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CCG,Context,Base Insertion,36858,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CCG,Context,Base Deletion,36858,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CCT,Context,Base Insertion,179188,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CCT,Context,Base Deletion,179188,5.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CG,Context,Base Substitution,112314,355.84,26.00,29.93,-3.93,Before
REGRESSION.HCC1395_tumor.L001,CGA,Context,Base Insertion,44528,3.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CGA,Context,Base Deletion,44528,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CGC,Context,Base Insertion,63556,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CGC,Context,Base Deletion,63556,2.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CGG,Context,Base Insertion,76882,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CGG,Context,Base Deletion,76882,3.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CGT,Context,Base Insertion,49751,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CGT,Context,Base Deletion,49751,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CT,Context,Base Substitution,599626,441.12,31.00,32.53,-1.53,Before
REGRESSION.HCC1395_tumor.L001,CTA,Context,Base Insertion,58647,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CTA,Context,Base Deletion,58647,3.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CTC,Context,Base Insertion,146290,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CTC,Context,Base Deletion,146290,9.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CTG,Context,Base Insertion,215192,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CTG,Context,Base Deletion,215192,5.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CTT,Context,Base Insertion,147509,2.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,CTT,Context,Base Deletion,147509,4.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GA,Context,Base Substitution,498067,808.29,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L001,GAA,Context,Base Insertion,142549,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GAA,Context,Base Deletion,142549,3.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GAC,Context,Base Insertion,84270,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GAC,Context,Base Deletion,84270,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GAG,Context,Base Insertion,150115,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GAG,Context,Base Deletion,150115,3.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GAT,Context,Base Insertion,83421,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GAT,Context,Base Deletion,83421,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GC,Context,Base Substitution,490049,1083.33,27.00,30.33,-3.33,Before
REGRESSION.HCC1395_tumor.L001,GCA,Context,Base Insertion,149566,2.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GCA,Context,Base Deletion,149566,3.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GCC,Context,Base Insertion,147291,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GCC,Context,Base Deletion,147291,5.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GCG,Context,Base Insertion,35741,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GCG,Context,Base Deletion,35741,1.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GCT,Context,Base Insertion,156584,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GCT,Context,Base Deletion,156584,2.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GG,Context,Base Substitution,579152,760.19,29.00,31.76,-2.76,Before
REGRESSION.HCC1395_tumor.L001,GGA,Context,Base Insertion,157155,2.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GGA,Context,Base Deletion,157155,5.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GGC,Context,Base Insertion,145389,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GGC,Context,Base Deletion,145389,5.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GGG,Context,Base Insertion,158666,3.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GGG,Context,Base Deletion,158666,11.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GGT,Context,Base Insertion,115620,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GGT,Context,Base Deletion,115620,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GT,Context,Base Substitution,411941,695.35,28.00,32.26,-4.26,Before
REGRESSION.HCC1395_tumor.L001,GTA,Context,Base Insertion,66830,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GTA,Context,Base Deletion,66830,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GTC,Context,Base Insertion,92043,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GTC,Context,Base Deletion,92043,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GTG,Context,Base Insertion,140834,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GTG,Context,Base Deletion,140834,10.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GTT,Context,Base Insertion,100388,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,GTT,Context,Base Deletion,100388,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TA,Context,Base Substitution,289590,783.50,26.00,29.83,-3.83,Before
REGRESSION.HCC1395_tumor.L001,TAA,Context,Base Insertion,87925,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TAA,Context,Base Deletion,87925,4.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TAC,Context,Base Insertion,60429,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TAC,Context,Base Deletion,60429,3.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TAG,Context,Base Insertion,60247,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TAG,Context,Base Deletion,60247,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TAT,Context,Base Insertion,70770,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TAT,Context,Base Deletion,70770,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TC,Context,Base Substitution,450890,1002.62,27.00,30.54,-3.54,Before
REGRESSION.HCC1395_tumor.L001,TCA,Context,Base Insertion,132896,2.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TCA,Context,Base Deletion,132896,5.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TCC,Context,Base Insertion,145941,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TCC,Context,Base Deletion,145941,3.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TCG,Context,Base Insertion,18337,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TCG,Context,Base Deletion,18337,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TCT,Context,Base Insertion,154245,2.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TCT,Context,Base Deletion,154245,5.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TG,Context,Base Substitution,590715,458.24,31.00,31.86,-0.86,Before
REGRESSION.HCC1395_tumor.L001,TGA,Context,Base Insertion,140128,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TGA,Context,Base Deletion,140128,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TGC,Context,Base Insertion,136971,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TGC,Context,Base Deletion,136971,2.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TGG,Context,Base Insertion,175036,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TGG,Context,Base Deletion,175036,6.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TGT,Context,Base Insertion,140067,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TGT,Context,Base Deletion,140067,7.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TT,Context,Base Substitution,539885,698.63,29.00,32.87,-3.87,Before
REGRESSION.HCC1395_tumor.L001,TTA,Context,Base Insertion,87285,2.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TTA,Context,Base Deletion,87285,4.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TTC,Context,Base Insertion,130916,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TTC,Context,Base Deletion,130916,5.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TTG,Context,Base Insertion,114910,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TTG,Context,Base Deletion,114910,2.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,TTT,Context,Base Insertion,179211,22.28,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L001,TTT,Context,Base Deletion,179211,54.52,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L001,-1,Cycle,Base Substitution,26809,89.72,25.00,26.02,-1.02,Before
REGRESSION.HCC1395_tumor.L001,-10,Cycle,Base Substitution,27018,42.45,31.00,32.19,-1.19,Before
REGRESSION.HCC1395_tumor.L001,-10,Cycle,Base Insertion,27018,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-10,Cycle,Base Deletion,27018,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-100,Cycle,Base Substitution,25058,39.57,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L001,-100,Cycle,Base Insertion,24821,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-100,Cycle,Base Deletion,24821,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-101,Cycle,Base Substitution,24966,54.37,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L001,-101,Cycle,Base Insertion,24725,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-101,Cycle,Base Deletion,24725,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-102,Cycle,Base Substitution,24888,54.42,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L001,-102,Cycle,Base Insertion,24628,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-102,Cycle,Base Deletion,24628,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-103,Cycle,Base Substitution,24721,49.33,29.00,30.35,-1.35,Before
REGRESSION.HCC1395_tumor.L001,-103,Cycle,Base Insertion,24461,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-103,Cycle,Base Deletion,24461,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-104,Cycle,Base Substitution,24692,39.27,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L001,-104,Cycle,Base Insertion,24405,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-104,Cycle,Base Deletion,24405,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-105,Cycle,Base Substitution,24600,47.13,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L001,-105,Cycle,Base Insertion,24306,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-105,Cycle,Base Deletion,24306,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-106,Cycle,Base Substitution,24652,46.46,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L001,-106,Cycle,Base Insertion,24378,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-106,Cycle,Base Deletion,24378,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-107,Cycle,Base Substitution,24471,43.68,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L001,-107,Cycle,Base Insertion,24204,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-107,Cycle,Base Deletion,24204,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-108,Cycle,Base Substitution,24464,48.24,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L001,-108,Cycle,Base Insertion,24191,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-108,Cycle,Base Deletion,24191,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-109,Cycle,Base Substitution,24388,41.50,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L001,-109,Cycle,Base Insertion,24132,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-109,Cycle,Base Deletion,24132,1.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-11,Cycle,Base Substitution,27067,44.10,30.00,31.65,-1.65,Before
REGRESSION.HCC1395_tumor.L001,-11,Cycle,Base Insertion,27067,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-11,Cycle,Base Deletion,27067,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-110,Cycle,Base Substitution,24389,50.41,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L001,-110,Cycle,Base Insertion,24103,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-110,Cycle,Base Deletion,24103,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-111,Cycle,Base Substitution,24279,44.56,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L001,-111,Cycle,Base Insertion,23974,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-111,Cycle,Base Deletion,23974,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-112,Cycle,Base Substitution,24269,36.00,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L001,-112,Cycle,Base Insertion,23965,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-112,Cycle,Base Deletion,23965,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-113,Cycle,Base Substitution,24185,27.69,30.00,30.33,-0.33,Before
REGRESSION.HCC1395_tumor.L001,-113,Cycle,Base Insertion,23892,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-113,Cycle,Base Deletion,23892,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-114,Cycle,Base Substitution,24120,38.92,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L001,-114,Cycle,Base Insertion,23845,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-114,Cycle,Base Deletion,23845,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-115,Cycle,Base Substitution,24125,52.23,28.00,29.96,-1.96,Before
REGRESSION.HCC1395_tumor.L001,-115,Cycle,Base Insertion,23850,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-115,Cycle,Base Deletion,23850,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-116,Cycle,Base Substitution,23929,47.00,29.00,30.43,-1.43,Before
REGRESSION.HCC1395_tumor.L001,-116,Cycle,Base Insertion,23654,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-116,Cycle,Base Deletion,23654,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-117,Cycle,Base Substitution,23849,49.31,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L001,-117,Cycle,Base Insertion,23559,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-117,Cycle,Base Deletion,23559,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-118,Cycle,Base Substitution,23867,37.99,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L001,-118,Cycle,Base Insertion,23552,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-118,Cycle,Base Deletion,23552,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-119,Cycle,Base Substitution,23759,48.25,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L001,-119,Cycle,Base Insertion,23446,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-119,Cycle,Base Deletion,23446,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-12,Cycle,Base Substitution,27029,31.88,30.00,31.97,-1.97,Before
REGRESSION.HCC1395_tumor.L001,-12,Cycle,Base Insertion,27029,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-12,Cycle,Base Deletion,27029,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-120,Cycle,Base Substitution,23672,54.35,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L001,-120,Cycle,Base Insertion,23382,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-120,Cycle,Base Deletion,23382,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-121,Cycle,Base Substitution,23715,56.61,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L001,-121,Cycle,Base Insertion,23422,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-121,Cycle,Base Deletion,23422,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-122,Cycle,Base Substitution,23537,44.74,28.00,29.69,-1.69,Before
REGRESSION.HCC1395_tumor.L001,-122,Cycle,Base Insertion,23263,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-122,Cycle,Base Deletion,23263,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-123,Cycle,Base Substitution,23498,59.95,28.00,29.72,-1.72,Before
REGRESSION.HCC1395_tumor.L001,-123,Cycle,Base Insertion,23210,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-123,Cycle,Base Deletion,23210,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-124,Cycle,Base Substitution,23452,37.41,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L001,-124,Cycle,Base Insertion,23135,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-124,Cycle,Base Deletion,23135,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-125,Cycle,Base Substitution,23367,49.66,28.00,29.69,-1.69,Before
REGRESSION.HCC1395_tumor.L001,-125,Cycle,Base Insertion,23058,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-125,Cycle,Base Deletion,23058,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-126,Cycle,Base Substitution,23346,46.51,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L001,-126,Cycle,Base Insertion,23030,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-126,Cycle,Base Deletion,23030,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-127,Cycle,Base Substitution,23351,54.12,28.00,29.91,-1.91,Before
REGRESSION.HCC1395_tumor.L001,-127,Cycle,Base Insertion,23044,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-127,Cycle,Base Deletion,23044,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-128,Cycle,Base Substitution,23160,47.33,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L001,-128,Cycle,Base Insertion,22852,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-128,Cycle,Base Deletion,22852,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-129,Cycle,Base Substitution,23103,57.60,28.00,30.04,-2.04,Before
REGRESSION.HCC1395_tumor.L001,-129,Cycle,Base Insertion,22804,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-129,Cycle,Base Deletion,22804,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-13,Cycle,Base Substitution,27018,39.89,30.00,31.77,-1.77,Before
REGRESSION.HCC1395_tumor.L001,-13,Cycle,Base Insertion,27018,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-13,Cycle,Base Deletion,27018,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-130,Cycle,Base Substitution,23065,33.44,30.00,30.07,-0.07,Before
REGRESSION.HCC1395_tumor.L001,-130,Cycle,Base Insertion,22745,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-130,Cycle,Base Deletion,22745,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-131,Cycle,Base Substitution,22983,41.92,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L001,-131,Cycle,Base Insertion,22647,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-131,Cycle,Base Deletion,22647,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-132,Cycle,Base Substitution,22962,43.59,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L001,-132,Cycle,Base Insertion,22613,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-132,Cycle,Base Deletion,22613,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-133,Cycle,Base Substitution,22827,43.36,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L001,-133,Cycle,Base Insertion,22476,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-133,Cycle,Base Deletion,22476,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-134,Cycle,Base Substitution,22704,35.10,29.00,29.88,-0.88,Before
REGRESSION.HCC1395_tumor.L001,-134,Cycle,Base Insertion,22368,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-134,Cycle,Base Deletion,22368,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-135,Cycle,Base Substitution,22646,49.39,28.00,29.64,-1.64,Before
REGRESSION.HCC1395_tumor.L001,-135,Cycle,Base Insertion,22306,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-135,Cycle,Base Deletion,22306,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-136,Cycle,Base Substitution,22531,47.28,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L001,-136,Cycle,Base Insertion,22181,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-136,Cycle,Base Deletion,22181,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-137,Cycle,Base Substitution,22420,35.82,29.00,29.59,-0.59,Before
REGRESSION.HCC1395_tumor.L001,-137,Cycle,Base Insertion,22064,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-137,Cycle,Base Deletion,22064,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-138,Cycle,Base Substitution,22391,36.64,29.00,29.85,-0.85,Before
REGRESSION.HCC1395_tumor.L001,-138,Cycle,Base Insertion,22004,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-138,Cycle,Base Deletion,22004,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-139,Cycle,Base Substitution,22345,48.11,28.00,29.55,-1.55,Before
REGRESSION.HCC1395_tumor.L001,-139,Cycle,Base Insertion,21966,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-139,Cycle,Base Deletion,21966,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-14,Cycle,Base Substitution,27029,45.08,30.00,31.89,-1.89,Before
REGRESSION.HCC1395_tumor.L001,-14,Cycle,Base Insertion,27029,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-14,Cycle,Base Deletion,27029,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-140,Cycle,Base Substitution,22329,34.37,29.00,29.87,-0.87,Before
REGRESSION.HCC1395_tumor.L001,-140,Cycle,Base Insertion,21918,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-140,Cycle,Base Deletion,21918,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-141,Cycle,Base Substitution,22195,28.54,29.00,29.68,-0.68,Before
REGRESSION.HCC1395_tumor.L001,-141,Cycle,Base Insertion,21769,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-141,Cycle,Base Deletion,21769,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-142,Cycle,Base Substitution,22102,30.00,29.00,29.80,-0.80,Before
REGRESSION.HCC1395_tumor.L001,-142,Cycle,Base Insertion,21661,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-142,Cycle,Base Deletion,21661,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-143,Cycle,Base Substitution,21923,31.13,29.00,29.91,-0.91,Before
REGRESSION.HCC1395_tumor.L001,-143,Cycle,Base Insertion,21475,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-143,Cycle,Base Deletion,21475,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-144,Cycle,Base Substitution,21848,35.39,29.00,29.67,-0.67,Before
REGRESSION.HCC1395_tumor.L001,-144,Cycle,Base Insertion,21384,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-144,Cycle,Base Deletion,21384,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-145,Cycle,Base Substitution,21755,39.02,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L001,-145,Cycle,Base Insertion,16718,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-145,Cycle,Base Deletion,16718,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-146,Cycle,Base Substitution,21674,65.14,27.00,29.98,-2.98,Before
REGRESSION.HCC1395_tumor.L001,-146,Cycle,Base Insertion,16646,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-146,Cycle,Base Deletion,16646,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-147,Cycle,Base Substitution,21534,223.59,23.00,30.17,-7.17,Before
REGRESSION.HCC1395_tumor.L001,-148,Cycle,Base Substitution,21357,857.24,15.00,30.31,-15.31,Before
REGRESSION.HCC1395_tumor.L001,-149,Cycle,Base Substitution,13322,779.46,14.00,30.98,-16.98,Before
REGRESSION.HCC1395_tumor.L001,-15,Cycle,Base Substitution,26931,31.78,31.00,32.06,-1.06,Before
REGRESSION.HCC1395_tumor.L001,-15,Cycle,Base Insertion,26931,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-15,Cycle,Base Deletion,26931,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-150,Cycle,Base Substitution,4686,7.51,30.00,30.52,-0.52,Before
REGRESSION.HCC1395_tumor.L001,-16,Cycle,Base Substitution,26942,40.78,30.00,31.71,-1.71,Before
REGRESSION.HCC1395_tumor.L001,-16,Cycle,Base Insertion,26942,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-16,Cycle,Base Deletion,26942,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-17,Cycle,Base Substitution,27013,41.70,30.00,31.79,-1.79,Before
REGRESSION.HCC1395_tumor.L001,-17,Cycle,Base Insertion,27013,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-17,Cycle,Base Deletion,27013,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-18,Cycle,Base Substitution,27031,29.31,31.00,32.09,-1.09,Before
REGRESSION.HCC1395_tumor.L001,-18,Cycle,Base Insertion,27031,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-18,Cycle,Base Deletion,27031,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-19,Cycle,Base Substitution,26858,38.39,30.00,31.54,-1.54,Before
REGRESSION.HCC1395_tumor.L001,-19,Cycle,Base Insertion,26858,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-19,Cycle,Base Deletion,26858,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-2,Cycle,Base Substitution,27217,72.88,27.00,28.66,-1.66,Before
REGRESSION.HCC1395_tumor.L001,-20,Cycle,Base Substitution,27002,36.20,30.00,31.63,-1.63,Before
REGRESSION.HCC1395_tumor.L001,-20,Cycle,Base Insertion,27002,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-20,Cycle,Base Deletion,27002,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-21,Cycle,Base Substitution,26895,35.45,31.00,32.18,-1.18,Before
REGRESSION.HCC1395_tumor.L001,-21,Cycle,Base Insertion,26895,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-21,Cycle,Base Deletion,26895,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-22,Cycle,Base Substitution,26936,40.89,31.00,32.17,-1.17,Before
REGRESSION.HCC1395_tumor.L001,-22,Cycle,Base Insertion,26936,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-22,Cycle,Base Deletion,26936,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-23,Cycle,Base Substitution,26881,31.70,31.00,32.11,-1.11,Before
REGRESSION.HCC1395_tumor.L001,-23,Cycle,Base Insertion,26881,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-23,Cycle,Base Deletion,26881,1.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-24,Cycle,Base Substitution,26890,38.88,30.00,31.98,-1.98,Before
REGRESSION.HCC1395_tumor.L001,-24,Cycle,Base Insertion,26890,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-24,Cycle,Base Deletion,26890,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-25,Cycle,Base Substitution,26894,35.58,30.00,31.76,-1.76,Before
REGRESSION.HCC1395_tumor.L001,-25,Cycle,Base Insertion,26894,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-25,Cycle,Base Deletion,26894,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-26,Cycle,Base Substitution,26762,35.20,30.00,30.68,-0.68,Before
REGRESSION.HCC1395_tumor.L001,-26,Cycle,Base Insertion,26762,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-26,Cycle,Base Deletion,26762,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-27,Cycle,Base Substitution,26878,32.44,30.00,30.17,-0.17,Before
REGRESSION.HCC1395_tumor.L001,-27,Cycle,Base Insertion,26878,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-27,Cycle,Base Deletion,26878,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-28,Cycle,Base Substitution,26924,46.56,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L001,-28,Cycle,Base Insertion,26924,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-28,Cycle,Base Deletion,26924,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-29,Cycle,Base Substitution,26893,27.65,30.00,30.75,-0.75,Before
REGRESSION.HCC1395_tumor.L001,-29,Cycle,Base Insertion,26893,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-29,Cycle,Base Deletion,26893,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-3,Cycle,Base Substitution,27283,69.02,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L001,-30,Cycle,Base Substitution,26839,47.20,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L001,-30,Cycle,Base Insertion,26838,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-30,Cycle,Base Deletion,26838,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-31,Cycle,Base Substitution,26844,37.40,30.00,30.49,-0.49,Before
REGRESSION.HCC1395_tumor.L001,-31,Cycle,Base Insertion,26843,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-31,Cycle,Base Deletion,26843,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-32,Cycle,Base Substitution,26759,39.56,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L001,-32,Cycle,Base Insertion,26758,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-32,Cycle,Base Deletion,26758,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-33,Cycle,Base Substitution,26813,31.97,30.00,30.65,-0.65,Before
REGRESSION.HCC1395_tumor.L001,-33,Cycle,Base Insertion,26812,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-33,Cycle,Base Deletion,26812,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-34,Cycle,Base Substitution,26782,29.19,30.00,30.80,-0.80,Before
REGRESSION.HCC1395_tumor.L001,-34,Cycle,Base Insertion,26781,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-34,Cycle,Base Deletion,26781,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-35,Cycle,Base Substitution,26734,35.06,30.00,30.57,-0.57,Before
REGRESSION.HCC1395_tumor.L001,-35,Cycle,Base Insertion,26733,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-35,Cycle,Base Deletion,26733,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-36,Cycle,Base Substitution,26822,38.44,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L001,-36,Cycle,Base Insertion,26822,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-36,Cycle,Base Deletion,26822,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-37,Cycle,Base Substitution,26795,30.93,30.00,30.56,-0.56,Before
REGRESSION.HCC1395_tumor.L001,-37,Cycle,Base Insertion,26794,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-37,Cycle,Base Deletion,26794,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-38,Cycle,Base Substitution,26671,41.90,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L001,-38,Cycle,Base Insertion,26669,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-38,Cycle,Base Deletion,26669,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-39,Cycle,Base Substitution,26713,36.37,30.00,30.65,-0.65,Before
REGRESSION.HCC1395_tumor.L001,-39,Cycle,Base Insertion,26712,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-39,Cycle,Base Deletion,26712,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-4,Cycle,Base Substitution,27135,63.05,28.00,29.96,-1.96,Before
REGRESSION.HCC1395_tumor.L001,-40,Cycle,Base Substitution,26696,32.72,30.00,30.70,-0.70,Before
REGRESSION.HCC1395_tumor.L001,-40,Cycle,Base Insertion,26695,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-40,Cycle,Base Deletion,26695,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-41,Cycle,Base Substitution,26637,29.91,30.00,30.62,-0.62,Before
REGRESSION.HCC1395_tumor.L001,-41,Cycle,Base Insertion,26634,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-41,Cycle,Base Deletion,26634,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-42,Cycle,Base Substitution,26733,33.97,30.00,30.81,-0.81,Before
REGRESSION.HCC1395_tumor.L001,-42,Cycle,Base Insertion,26729,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-42,Cycle,Base Deletion,26729,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-43,Cycle,Base Substitution,26762,32.28,30.00,30.66,-0.66,Before
REGRESSION.HCC1395_tumor.L001,-43,Cycle,Base Insertion,26756,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-43,Cycle,Base Deletion,26756,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-44,Cycle,Base Substitution,26773,37.66,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L001,-44,Cycle,Base Insertion,26765,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-44,Cycle,Base Deletion,26765,1.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-45,Cycle,Base Substitution,26746,38.22,29.00,30.59,-1.59,Before
REGRESSION.HCC1395_tumor.L001,-45,Cycle,Base Insertion,26736,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-45,Cycle,Base Deletion,26736,2.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-46,Cycle,Base Substitution,26691,34.15,30.00,30.95,-0.95,Before
REGRESSION.HCC1395_tumor.L001,-46,Cycle,Base Insertion,26683,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-46,Cycle,Base Deletion,26683,2.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-47,Cycle,Base Substitution,26625,39.19,29.00,30.77,-1.77,Before
REGRESSION.HCC1395_tumor.L001,-47,Cycle,Base Insertion,26619,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-47,Cycle,Base Deletion,26619,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-48,Cycle,Base Substitution,26558,34.73,30.00,30.89,-0.89,Before
REGRESSION.HCC1395_tumor.L001,-48,Cycle,Base Insertion,26549,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-48,Cycle,Base Deletion,26549,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-49,Cycle,Base Substitution,26660,32.84,30.00,30.44,-0.44,Before
REGRESSION.HCC1395_tumor.L001,-49,Cycle,Base Insertion,26646,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-49,Cycle,Base Deletion,26646,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-5,Cycle,Base Substitution,27148,38.80,30.00,31.00,-1.00,Before
REGRESSION.HCC1395_tumor.L001,-5,Cycle,Base Insertion,27148,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-5,Cycle,Base Deletion,27148,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-50,Cycle,Base Substitution,26689,43.30,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L001,-50,Cycle,Base Insertion,26670,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-50,Cycle,Base Deletion,26670,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-51,Cycle,Base Substitution,26761,47.17,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L001,-51,Cycle,Base Insertion,26744,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-51,Cycle,Base Deletion,26744,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-52,Cycle,Base Substitution,26616,45.96,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L001,-52,Cycle,Base Insertion,26599,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-52,Cycle,Base Deletion,26599,3.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-53,Cycle,Base Substitution,26642,42.79,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L001,-53,Cycle,Base Insertion,26625,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-53,Cycle,Base Deletion,26625,1.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-54,Cycle,Base Substitution,26572,43.33,30.00,31.00,-1.00,Before
REGRESSION.HCC1395_tumor.L001,-54,Cycle,Base Insertion,26554,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-54,Cycle,Base Deletion,26554,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-55,Cycle,Base Substitution,26698,52.60,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L001,-55,Cycle,Base Insertion,26675,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-55,Cycle,Base Deletion,26675,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-56,Cycle,Base Substitution,26463,49.60,29.00,30.85,-1.85,Before
REGRESSION.HCC1395_tumor.L001,-56,Cycle,Base Insertion,26435,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-56,Cycle,Base Deletion,26435,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-57,Cycle,Base Substitution,26591,38.76,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L001,-57,Cycle,Base Insertion,26546,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-57,Cycle,Base Deletion,26546,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-58,Cycle,Base Substitution,26571,28.50,30.00,30.91,-0.91,Before
REGRESSION.HCC1395_tumor.L001,-58,Cycle,Base Insertion,26529,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-58,Cycle,Base Deletion,26529,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-59,Cycle,Base Substitution,26520,45.41,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L001,-59,Cycle,Base Insertion,26459,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-59,Cycle,Base Deletion,26459,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-6,Cycle,Base Substitution,26933,44.52,30.00,31.22,-1.22,Before
REGRESSION.HCC1395_tumor.L001,-6,Cycle,Base Insertion,26933,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-6,Cycle,Base Deletion,26933,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-60,Cycle,Base Substitution,26487,44.40,29.00,30.91,-1.91,Before
REGRESSION.HCC1395_tumor.L001,-60,Cycle,Base Insertion,26430,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-60,Cycle,Base Deletion,26430,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-61,Cycle,Base Substitution,26349,47.74,29.00,30.70,-1.70,Before
REGRESSION.HCC1395_tumor.L001,-61,Cycle,Base Insertion,26290,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-61,Cycle,Base Deletion,26290,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-62,Cycle,Base Substitution,26569,42.12,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L001,-62,Cycle,Base Insertion,26505,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-62,Cycle,Base Deletion,26505,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-63,Cycle,Base Substitution,26427,28.00,31.00,31.02,-0.02,Before
REGRESSION.HCC1395_tumor.L001,-63,Cycle,Base Insertion,26371,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-63,Cycle,Base Deletion,26371,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-64,Cycle,Base Substitution,26292,28.65,31.00,31.06,-0.06,Before
REGRESSION.HCC1395_tumor.L001,-64,Cycle,Base Insertion,26227,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-64,Cycle,Base Deletion,26227,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-65,Cycle,Base Substitution,26326,42.82,29.00,30.93,-1.93,Before
REGRESSION.HCC1395_tumor.L001,-65,Cycle,Base Insertion,26253,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-65,Cycle,Base Deletion,26253,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-66,Cycle,Base Substitution,26385,42.50,30.00,31.07,-1.07,Before
REGRESSION.HCC1395_tumor.L001,-66,Cycle,Base Insertion,26297,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-66,Cycle,Base Deletion,26297,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-67,Cycle,Base Substitution,26330,34.84,30.00,30.70,-0.70,Before
REGRESSION.HCC1395_tumor.L001,-67,Cycle,Base Insertion,26239,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-67,Cycle,Base Deletion,26239,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-68,Cycle,Base Substitution,26229,41.15,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L001,-68,Cycle,Base Insertion,26136,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-68,Cycle,Base Deletion,26136,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-69,Cycle,Base Substitution,26305,40.02,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L001,-69,Cycle,Base Insertion,26213,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-69,Cycle,Base Deletion,26213,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-7,Cycle,Base Substitution,27067,51.86,29.00,30.83,-1.83,Before
REGRESSION.HCC1395_tumor.L001,-7,Cycle,Base Insertion,27067,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-7,Cycle,Base Deletion,27067,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-70,Cycle,Base Substitution,26223,30.88,30.00,30.45,-0.45,Before
REGRESSION.HCC1395_tumor.L001,-70,Cycle,Base Insertion,26136,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-70,Cycle,Base Deletion,26136,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-71,Cycle,Base Substitution,26239,47.09,29.00,30.89,-1.89,Before
REGRESSION.HCC1395_tumor.L001,-71,Cycle,Base Insertion,26135,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-71,Cycle,Base Deletion,26135,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-72,Cycle,Base Substitution,26183,38.48,29.00,30.86,-1.86,Before
REGRESSION.HCC1395_tumor.L001,-72,Cycle,Base Insertion,26076,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-72,Cycle,Base Deletion,26076,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-73,Cycle,Base Substitution,26140,50.05,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L001,-73,Cycle,Base Insertion,26023,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-73,Cycle,Base Deletion,26023,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-74,Cycle,Base Substitution,26153,44.59,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L001,-74,Cycle,Base Insertion,26029,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-74,Cycle,Base Deletion,26029,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-75,Cycle,Base Substitution,26143,51.60,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L001,-75,Cycle,Base Insertion,26013,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-75,Cycle,Base Deletion,26013,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-76,Cycle,Base Substitution,26048,42.39,29.00,30.77,-1.77,Before
REGRESSION.HCC1395_tumor.L001,-76,Cycle,Base Insertion,25914,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-76,Cycle,Base Deletion,25914,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-77,Cycle,Base Substitution,26044,32.46,30.00,30.67,-0.67,Before
REGRESSION.HCC1395_tumor.L001,-77,Cycle,Base Insertion,25906,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-77,Cycle,Base Deletion,25906,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-78,Cycle,Base Substitution,25953,38.08,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L001,-78,Cycle,Base Insertion,25796,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-78,Cycle,Base Deletion,25796,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-79,Cycle,Base Substitution,25987,37.60,29.00,30.91,-1.91,Before
REGRESSION.HCC1395_tumor.L001,-79,Cycle,Base Insertion,25818,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-79,Cycle,Base Deletion,25818,2.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-8,Cycle,Base Substitution,27074,43.12,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L001,-8,Cycle,Base Insertion,27074,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-8,Cycle,Base Deletion,27074,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-80,Cycle,Base Substitution,25913,35.41,30.00,30.55,-0.55,Before
REGRESSION.HCC1395_tumor.L001,-80,Cycle,Base Insertion,25764,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-80,Cycle,Base Deletion,25764,2.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-81,Cycle,Base Substitution,25853,33.72,30.00,30.77,-0.77,Before
REGRESSION.HCC1395_tumor.L001,-81,Cycle,Base Insertion,25687,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-81,Cycle,Base Deletion,25687,1.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-82,Cycle,Base Substitution,25886,52.34,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L001,-82,Cycle,Base Insertion,25718,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-82,Cycle,Base Deletion,25718,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-83,Cycle,Base Substitution,25695,46.64,29.00,30.91,-1.91,Before
REGRESSION.HCC1395_tumor.L001,-83,Cycle,Base Insertion,25524,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-83,Cycle,Base Deletion,25524,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-84,Cycle,Base Substitution,25765,41.79,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L001,-84,Cycle,Base Insertion,25598,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-84,Cycle,Base Deletion,25598,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-85,Cycle,Base Substitution,25698,46.34,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L001,-85,Cycle,Base Insertion,25501,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-85,Cycle,Base Deletion,25501,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-86,Cycle,Base Substitution,25628,48.36,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L001,-86,Cycle,Base Insertion,25456,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-86,Cycle,Base Deletion,25456,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-87,Cycle,Base Substitution,25558,49.72,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L001,-87,Cycle,Base Insertion,25361,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-87,Cycle,Base Deletion,25361,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-88,Cycle,Base Substitution,25504,47.66,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L001,-88,Cycle,Base Insertion,25324,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-88,Cycle,Base Deletion,25324,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-89,Cycle,Base Substitution,25562,47.53,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L001,-89,Cycle,Base Insertion,25382,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-89,Cycle,Base Deletion,25382,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-9,Cycle,Base Substitution,27194,38.74,30.00,31.17,-1.17,Before
REGRESSION.HCC1395_tumor.L001,-9,Cycle,Base Insertion,27194,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-9,Cycle,Base Deletion,27194,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-90,Cycle,Base Substitution,25520,49.21,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L001,-90,Cycle,Base Insertion,25317,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-90,Cycle,Base Deletion,25317,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-91,Cycle,Base Substitution,25404,42.66,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L001,-91,Cycle,Base Insertion,25208,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-91,Cycle,Base Deletion,25208,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-92,Cycle,Base Substitution,25403,34.08,30.00,30.99,-0.99,Before
REGRESSION.HCC1395_tumor.L001,-92,Cycle,Base Insertion,25185,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-92,Cycle,Base Deletion,25185,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-93,Cycle,Base Substitution,25241,45.57,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L001,-93,Cycle,Base Insertion,25021,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-93,Cycle,Base Deletion,25021,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-94,Cycle,Base Substitution,25443,41.85,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L001,-94,Cycle,Base Insertion,25212,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-94,Cycle,Base Deletion,25212,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-95,Cycle,Base Substitution,25215,40.99,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L001,-95,Cycle,Base Insertion,24960,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-95,Cycle,Base Deletion,24960,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-96,Cycle,Base Substitution,25252,50.05,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L001,-96,Cycle,Base Insertion,24984,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-96,Cycle,Base Deletion,24984,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-97,Cycle,Base Substitution,25132,42.10,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L001,-97,Cycle,Base Insertion,24887,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-97,Cycle,Base Deletion,24887,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-98,Cycle,Base Substitution,25048,55.11,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L001,-98,Cycle,Base Insertion,24818,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-98,Cycle,Base Deletion,24818,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-99,Cycle,Base Substitution,25041,43.56,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L001,-99,Cycle,Base Insertion,24809,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,-99,Cycle,Base Deletion,24809,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,1,Cycle,Base Substitution,26806,58.08,27.00,28.76,-1.76,Before
REGRESSION.HCC1395_tumor.L001,10,Cycle,Base Substitution,27128,32.21,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L001,10,Cycle,Base Insertion,27128,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,10,Cycle,Base Deletion,27128,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,100,Cycle,Base Substitution,25028,41.70,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L001,100,Cycle,Base Insertion,24786,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,100,Cycle,Base Deletion,24786,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,101,Cycle,Base Substitution,24904,31.35,30.00,30.55,-0.55,Before
REGRESSION.HCC1395_tumor.L001,101,Cycle,Base Insertion,24643,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,101,Cycle,Base Deletion,24643,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,102,Cycle,Base Substitution,24764,54.90,29.00,30.43,-1.43,Before
REGRESSION.HCC1395_tumor.L001,102,Cycle,Base Insertion,24496,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,102,Cycle,Base Deletion,24496,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,103,Cycle,Base Substitution,24709,35.68,29.00,30.71,-1.71,Before
REGRESSION.HCC1395_tumor.L001,103,Cycle,Base Insertion,24434,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,103,Cycle,Base Deletion,24434,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,104,Cycle,Base Substitution,24762,32.25,30.00,30.81,-0.81,Before
REGRESSION.HCC1395_tumor.L001,104,Cycle,Base Insertion,24484,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,104,Cycle,Base Deletion,24484,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,105,Cycle,Base Substitution,24658,39.11,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L001,105,Cycle,Base Insertion,24370,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,105,Cycle,Base Deletion,24370,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,106,Cycle,Base Substitution,24504,49.48,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L001,106,Cycle,Base Insertion,24225,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,106,Cycle,Base Deletion,24225,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,107,Cycle,Base Substitution,24602,43.24,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L001,107,Cycle,Base Insertion,24335,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,107,Cycle,Base Deletion,24335,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,108,Cycle,Base Substitution,24463,54.89,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L001,108,Cycle,Base Insertion,24182,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,108,Cycle,Base Deletion,24182,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,109,Cycle,Base Substitution,24376,39.72,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L001,109,Cycle,Base Insertion,24111,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,109,Cycle,Base Deletion,24111,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,11,Cycle,Base Substitution,27044,32.57,30.00,31.11,-1.11,Before
REGRESSION.HCC1395_tumor.L001,11,Cycle,Base Insertion,27044,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,11,Cycle,Base Deletion,27044,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,110,Cycle,Base Substitution,24323,36.74,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L001,110,Cycle,Base Insertion,24034,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,110,Cycle,Base Deletion,24034,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,111,Cycle,Base Substitution,24212,39.88,29.00,30.47,-1.47,Before
REGRESSION.HCC1395_tumor.L001,111,Cycle,Base Insertion,23920,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,111,Cycle,Base Deletion,23920,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,112,Cycle,Base Substitution,24270,50.86,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L001,112,Cycle,Base Insertion,23983,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,112,Cycle,Base Deletion,23983,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,113,Cycle,Base Substitution,24278,43.28,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L001,113,Cycle,Base Insertion,23972,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,113,Cycle,Base Deletion,23972,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,114,Cycle,Base Substitution,23998,50.38,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L001,114,Cycle,Base Insertion,23725,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,114,Cycle,Base Deletion,23725,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,115,Cycle,Base Substitution,24077,40.32,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L001,115,Cycle,Base Insertion,23800,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,115,Cycle,Base Deletion,23800,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,116,Cycle,Base Substitution,23973,37.77,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L001,116,Cycle,Base Insertion,23679,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,116,Cycle,Base Deletion,23679,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,117,Cycle,Base Substitution,23846,48.15,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L001,117,Cycle,Base Insertion,23557,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,117,Cycle,Base Deletion,23557,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,118,Cycle,Base Substitution,23819,37.10,29.00,30.43,-1.43,Before
REGRESSION.HCC1395_tumor.L001,118,Cycle,Base Insertion,23522,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,118,Cycle,Base Deletion,23522,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,119,Cycle,Base Substitution,23760,38.32,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L001,119,Cycle,Base Insertion,23458,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,119,Cycle,Base Deletion,23458,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,12,Cycle,Base Substitution,27071,30.18,31.00,31.07,-0.07,Before
REGRESSION.HCC1395_tumor.L001,12,Cycle,Base Insertion,27071,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,12,Cycle,Base Deletion,27071,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,120,Cycle,Base Substitution,23737,42.45,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L001,120,Cycle,Base Insertion,23442,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,120,Cycle,Base Deletion,23442,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,121,Cycle,Base Substitution,23619,46.71,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L001,121,Cycle,Base Insertion,23348,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,121,Cycle,Base Deletion,23348,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,122,Cycle,Base Substitution,23564,48.63,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L001,122,Cycle,Base Insertion,23281,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,122,Cycle,Base Deletion,23281,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,123,Cycle,Base Substitution,23555,27.55,30.00,30.23,-0.23,Before
REGRESSION.HCC1395_tumor.L001,123,Cycle,Base Insertion,23252,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,123,Cycle,Base Deletion,23252,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,124,Cycle,Base Substitution,23521,34.65,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L001,124,Cycle,Base Insertion,23205,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,124,Cycle,Base Deletion,23205,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,125,Cycle,Base Substitution,23398,44.87,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L001,125,Cycle,Base Insertion,23087,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,125,Cycle,Base Deletion,23087,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,126,Cycle,Base Substitution,23250,41.14,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L001,126,Cycle,Base Insertion,22937,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,126,Cycle,Base Deletion,22937,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,127,Cycle,Base Substitution,23287,35.93,29.00,29.99,-0.99,Before
REGRESSION.HCC1395_tumor.L001,127,Cycle,Base Insertion,22985,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,127,Cycle,Base Deletion,22985,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,128,Cycle,Base Substitution,23174,45.86,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L001,128,Cycle,Base Insertion,22857,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,128,Cycle,Base Deletion,22857,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,129,Cycle,Base Substitution,23156,38.07,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L001,129,Cycle,Base Insertion,22860,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,129,Cycle,Base Deletion,22860,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,13,Cycle,Base Substitution,27031,28.90,31.00,31.58,-0.58,Before
REGRESSION.HCC1395_tumor.L001,13,Cycle,Base Insertion,27031,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,13,Cycle,Base Deletion,27031,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,130,Cycle,Base Substitution,22948,47.10,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L001,130,Cycle,Base Insertion,22634,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,130,Cycle,Base Deletion,22634,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,131,Cycle,Base Substitution,22868,43.90,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L001,131,Cycle,Base Insertion,22535,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,131,Cycle,Base Deletion,22535,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,132,Cycle,Base Substitution,22821,42.44,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L001,132,Cycle,Base Insertion,22482,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,132,Cycle,Base Deletion,22482,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,133,Cycle,Base Substitution,22795,39.90,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L001,133,Cycle,Base Insertion,22470,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,133,Cycle,Base Deletion,22470,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,134,Cycle,Base Substitution,22695,43.25,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L001,134,Cycle,Base Insertion,22368,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,134,Cycle,Base Deletion,22368,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,135,Cycle,Base Substitution,22603,44.00,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L001,135,Cycle,Base Insertion,22276,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,135,Cycle,Base Deletion,22276,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,136,Cycle,Base Substitution,22463,27.31,30.00,30.39,-0.39,Before
REGRESSION.HCC1395_tumor.L001,136,Cycle,Base Insertion,22139,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,136,Cycle,Base Deletion,22139,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,137,Cycle,Base Substitution,22527,44.64,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L001,137,Cycle,Base Insertion,22204,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,137,Cycle,Base Deletion,22204,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,138,Cycle,Base Substitution,22383,45.44,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L001,138,Cycle,Base Insertion,22025,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,138,Cycle,Base Deletion,22025,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,139,Cycle,Base Substitution,22288,49.19,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L001,139,Cycle,Base Insertion,21940,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,139,Cycle,Base Deletion,21940,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,14,Cycle,Base Substitution,27061,29.54,31.00,31.24,-0.24,Before
REGRESSION.HCC1395_tumor.L001,14,Cycle,Base Insertion,27061,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,14,Cycle,Base Deletion,27061,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,140,Cycle,Base Substitution,22204,46.92,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L001,140,Cycle,Base Insertion,21846,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,140,Cycle,Base Deletion,21846,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,141,Cycle,Base Substitution,22262,27.65,29.00,29.89,-0.89,Before
REGRESSION.HCC1395_tumor.L001,141,Cycle,Base Insertion,21902,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,141,Cycle,Base Deletion,21902,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,142,Cycle,Base Substitution,21981,45.34,28.00,29.64,-1.64,Before
REGRESSION.HCC1395_tumor.L001,142,Cycle,Base Insertion,21620,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,142,Cycle,Base Deletion,21620,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,143,Cycle,Base Substitution,22028,54.15,28.00,29.65,-1.65,Before
REGRESSION.HCC1395_tumor.L001,143,Cycle,Base Insertion,21668,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,143,Cycle,Base Deletion,21668,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,144,Cycle,Base Substitution,21932,38.95,28.00,29.84,-1.84,Before
REGRESSION.HCC1395_tumor.L001,144,Cycle,Base Insertion,21588,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,144,Cycle,Base Deletion,21588,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,145,Cycle,Base Substitution,21778,39.92,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L001,145,Cycle,Base Insertion,21432,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,145,Cycle,Base Deletion,21432,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,146,Cycle,Base Substitution,21779,40.07,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L001,146,Cycle,Base Insertion,21459,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,146,Cycle,Base Deletion,21459,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,147,Cycle,Base Substitution,21625,41.80,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L001,148,Cycle,Base Substitution,21591,44.14,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L001,149,Cycle,Base Substitution,21521,38.09,29.00,29.67,-0.67,Before
REGRESSION.HCC1395_tumor.L001,15,Cycle,Base Substitution,27055,29.21,31.00,31.67,-0.67,Before
REGRESSION.HCC1395_tumor.L001,15,Cycle,Base Insertion,27055,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,15,Cycle,Base Deletion,27055,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,150,Cycle,Base Substitution,21371,36.13,29.00,29.95,-0.95,Before
REGRESSION.HCC1395_tumor.L001,16,Cycle,Base Substitution,26926,23.88,32.00,32.89,-0.89,Before
REGRESSION.HCC1395_tumor.L001,16,Cycle,Base Insertion,26926,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,16,Cycle,Base Deletion,26926,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,17,Cycle,Base Substitution,26788,23.27,32.00,32.90,-0.90,Before
REGRESSION.HCC1395_tumor.L001,17,Cycle,Base Insertion,26788,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,17,Cycle,Base Deletion,26788,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,18,Cycle,Base Substitution,26919,28.33,32.00,33.04,-1.04,Before
REGRESSION.HCC1395_tumor.L001,18,Cycle,Base Insertion,26919,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,18,Cycle,Base Deletion,26919,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,19,Cycle,Base Substitution,27008,21.14,32.00,32.76,-0.76,Before
REGRESSION.HCC1395_tumor.L001,19,Cycle,Base Insertion,27008,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,19,Cycle,Base Deletion,27008,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,2,Cycle,Base Substitution,27150,49.32,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L001,20,Cycle,Base Substitution,26895,24.77,32.00,33.02,-1.02,Before
REGRESSION.HCC1395_tumor.L001,20,Cycle,Base Insertion,26895,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,20,Cycle,Base Deletion,26895,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,21,Cycle,Base Substitution,26930,29.03,31.00,32.92,-1.92,Before
REGRESSION.HCC1395_tumor.L001,21,Cycle,Base Insertion,26930,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,21,Cycle,Base Deletion,26930,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,22,Cycle,Base Substitution,26909,20.40,33.00,33.02,-0.02,Before
REGRESSION.HCC1395_tumor.L001,22,Cycle,Base Insertion,26909,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,22,Cycle,Base Deletion,26909,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,23,Cycle,Base Substitution,26922,19.07,32.00,32.92,-0.92,Before
REGRESSION.HCC1395_tumor.L001,23,Cycle,Base Insertion,26922,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,23,Cycle,Base Deletion,26922,2.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,24,Cycle,Base Substitution,26917,20.24,33.00,33.05,-0.05,Before
REGRESSION.HCC1395_tumor.L001,24,Cycle,Base Insertion,26917,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,24,Cycle,Base Deletion,26917,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,25,Cycle,Base Substitution,26883,18.58,33.00,33.28,-0.28,Before
REGRESSION.HCC1395_tumor.L001,25,Cycle,Base Insertion,26883,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,25,Cycle,Base Deletion,26883,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,26,Cycle,Base Substitution,26980,33.62,30.00,31.40,-1.40,Before
REGRESSION.HCC1395_tumor.L001,26,Cycle,Base Insertion,26980,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,26,Cycle,Base Deletion,26980,1.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,27,Cycle,Base Substitution,26882,29.34,31.00,31.71,-0.71,Before
REGRESSION.HCC1395_tumor.L001,27,Cycle,Base Insertion,26882,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,27,Cycle,Base Deletion,26882,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,28,Cycle,Base Substitution,26920,35.43,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L001,28,Cycle,Base Insertion,26920,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,28,Cycle,Base Deletion,26920,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,29,Cycle,Base Substitution,26892,29.10,31.00,31.98,-0.98,Before
REGRESSION.HCC1395_tumor.L001,29,Cycle,Base Insertion,26892,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,29,Cycle,Base Deletion,26892,2.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,3,Cycle,Base Substitution,27152,48.16,30.00,31.22,-1.22,Before
REGRESSION.HCC1395_tumor.L001,30,Cycle,Base Substitution,26891,31.57,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L001,30,Cycle,Base Insertion,26891,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,30,Cycle,Base Deletion,26891,2.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,31,Cycle,Base Substitution,26812,27.87,31.00,31.93,-0.93,Before
REGRESSION.HCC1395_tumor.L001,31,Cycle,Base Insertion,26812,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,31,Cycle,Base Deletion,26812,2.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,32,Cycle,Base Substitution,26853,39.61,30.00,31.05,-1.05,Before
REGRESSION.HCC1395_tumor.L001,32,Cycle,Base Insertion,26852,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,32,Cycle,Base Deletion,26852,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,33,Cycle,Base Substitution,26660,39.01,30.00,31.37,-1.37,Before
REGRESSION.HCC1395_tumor.L001,33,Cycle,Base Insertion,26659,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,33,Cycle,Base Deletion,26659,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,34,Cycle,Base Substitution,26844,32.03,30.00,31.54,-1.54,Before
REGRESSION.HCC1395_tumor.L001,34,Cycle,Base Insertion,26843,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,34,Cycle,Base Deletion,26843,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,35,Cycle,Base Substitution,26781,37.50,30.00,31.44,-1.44,Before
REGRESSION.HCC1395_tumor.L001,35,Cycle,Base Insertion,26779,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,35,Cycle,Base Deletion,26779,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,36,Cycle,Base Substitution,26860,34.74,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L001,36,Cycle,Base Insertion,26858,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,36,Cycle,Base Deletion,26858,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,37,Cycle,Base Substitution,26764,27.52,31.00,31.87,-0.87,Before
REGRESSION.HCC1395_tumor.L001,37,Cycle,Base Insertion,26762,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,37,Cycle,Base Deletion,26762,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,38,Cycle,Base Substitution,26845,36.85,30.00,31.82,-1.82,Before
REGRESSION.HCC1395_tumor.L001,38,Cycle,Base Insertion,26842,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,38,Cycle,Base Deletion,26842,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,39,Cycle,Base Substitution,26806,19.11,31.00,31.41,-0.41,Before
REGRESSION.HCC1395_tumor.L001,39,Cycle,Base Insertion,26805,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,39,Cycle,Base Deletion,26805,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,4,Cycle,Base Substitution,27110,70.03,28.00,31.00,-3.00,Before
REGRESSION.HCC1395_tumor.L001,40,Cycle,Base Substitution,26890,30.43,31.00,31.48,-0.48,Before
REGRESSION.HCC1395_tumor.L001,40,Cycle,Base Insertion,26889,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,40,Cycle,Base Deletion,26889,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,41,Cycle,Base Substitution,26852,35.76,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L001,41,Cycle,Base Insertion,26850,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,41,Cycle,Base Deletion,26850,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,42,Cycle,Base Substitution,26724,38.41,30.00,31.65,-1.65,Before
REGRESSION.HCC1395_tumor.L001,42,Cycle,Base Insertion,26722,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,42,Cycle,Base Deletion,26722,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,43,Cycle,Base Substitution,26722,27.90,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L001,43,Cycle,Base Insertion,26716,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,43,Cycle,Base Deletion,26716,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,44,Cycle,Base Substitution,26834,20.26,31.00,31.60,-0.60,Before
REGRESSION.HCC1395_tumor.L001,44,Cycle,Base Insertion,26825,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,44,Cycle,Base Deletion,26825,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,45,Cycle,Base Substitution,26624,28.43,31.00,31.58,-0.58,Before
REGRESSION.HCC1395_tumor.L001,45,Cycle,Base Insertion,26616,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,45,Cycle,Base Deletion,26616,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,46,Cycle,Base Substitution,26688,26.08,31.00,31.67,-0.67,Before
REGRESSION.HCC1395_tumor.L001,46,Cycle,Base Insertion,26679,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,46,Cycle,Base Deletion,26679,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,47,Cycle,Base Substitution,26650,35.08,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L001,47,Cycle,Base Insertion,26644,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,47,Cycle,Base Deletion,26644,2.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,48,Cycle,Base Substitution,26711,33.34,30.00,31.11,-1.11,Before
REGRESSION.HCC1395_tumor.L001,48,Cycle,Base Insertion,26700,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,48,Cycle,Base Deletion,26700,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,49,Cycle,Base Substitution,26742,28.79,31.00,31.38,-0.38,Before
REGRESSION.HCC1395_tumor.L001,49,Cycle,Base Insertion,26728,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,49,Cycle,Base Deletion,26728,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,5,Cycle,Base Substitution,27114,37.96,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L001,5,Cycle,Base Insertion,27114,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,5,Cycle,Base Deletion,27114,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,50,Cycle,Base Substitution,26612,35.30,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L001,50,Cycle,Base Insertion,26590,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,50,Cycle,Base Deletion,26590,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,51,Cycle,Base Substitution,26615,37.65,30.00,31.32,-1.32,Before
REGRESSION.HCC1395_tumor.L001,51,Cycle,Base Insertion,26595,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,51,Cycle,Base Deletion,26595,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,52,Cycle,Base Substitution,26613,33.85,30.00,31.59,-1.59,Before
REGRESSION.HCC1395_tumor.L001,52,Cycle,Base Insertion,26595,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,52,Cycle,Base Deletion,26595,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,53,Cycle,Base Substitution,26690,38.99,30.00,31.34,-1.34,Before
REGRESSION.HCC1395_tumor.L001,53,Cycle,Base Insertion,26669,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,53,Cycle,Base Deletion,26669,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,54,Cycle,Base Substitution,26601,33.70,30.00,31.22,-1.22,Before
REGRESSION.HCC1395_tumor.L001,54,Cycle,Base Insertion,26579,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,54,Cycle,Base Deletion,26579,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,55,Cycle,Base Substitution,26624,29.69,31.00,31.72,-0.72,Before
REGRESSION.HCC1395_tumor.L001,55,Cycle,Base Insertion,26600,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,55,Cycle,Base Deletion,26600,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,56,Cycle,Base Substitution,26560,32.02,30.00,31.31,-1.31,Before
REGRESSION.HCC1395_tumor.L001,56,Cycle,Base Insertion,26525,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,56,Cycle,Base Deletion,26525,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,57,Cycle,Base Substitution,26623,49.39,30.00,31.17,-1.17,Before
REGRESSION.HCC1395_tumor.L001,57,Cycle,Base Insertion,26582,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,57,Cycle,Base Deletion,26582,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,58,Cycle,Base Substitution,26552,36.30,30.00,31.41,-1.41,Before
REGRESSION.HCC1395_tumor.L001,58,Cycle,Base Insertion,26507,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,58,Cycle,Base Deletion,26507,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,59,Cycle,Base Substitution,26563,26.50,31.00,31.32,-0.32,Before
REGRESSION.HCC1395_tumor.L001,59,Cycle,Base Insertion,26503,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,59,Cycle,Base Deletion,26503,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,6,Cycle,Base Substitution,27052,41.21,30.00,31.21,-1.21,Before
REGRESSION.HCC1395_tumor.L001,6,Cycle,Base Insertion,27052,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,6,Cycle,Base Deletion,27052,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,60,Cycle,Base Substitution,26538,37.54,30.00,31.36,-1.36,Before
REGRESSION.HCC1395_tumor.L001,60,Cycle,Base Insertion,26480,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,60,Cycle,Base Deletion,26480,2.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,61,Cycle,Base Substitution,26537,35.16,30.00,31.37,-1.37,Before
REGRESSION.HCC1395_tumor.L001,61,Cycle,Base Insertion,26480,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,61,Cycle,Base Deletion,26480,2.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,62,Cycle,Base Substitution,26565,35.06,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L001,62,Cycle,Base Insertion,26506,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,62,Cycle,Base Deletion,26506,2.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,63,Cycle,Base Substitution,26453,45.89,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L001,63,Cycle,Base Insertion,26390,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,63,Cycle,Base Deletion,26390,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,64,Cycle,Base Substitution,26527,33.03,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L001,64,Cycle,Base Insertion,26453,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,64,Cycle,Base Deletion,26453,2.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,65,Cycle,Base Substitution,26365,40.55,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L001,65,Cycle,Base Insertion,26294,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,65,Cycle,Base Deletion,26294,2.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,66,Cycle,Base Substitution,26307,35.84,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L001,66,Cycle,Base Insertion,26220,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,66,Cycle,Base Deletion,26220,2.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,67,Cycle,Base Substitution,26439,39.14,30.00,31.50,-1.50,Before
REGRESSION.HCC1395_tumor.L001,67,Cycle,Base Insertion,26348,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,67,Cycle,Base Deletion,26348,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,68,Cycle,Base Substitution,26400,40.12,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L001,68,Cycle,Base Insertion,26304,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,68,Cycle,Base Deletion,26304,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,69,Cycle,Base Substitution,26288,35.38,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L001,69,Cycle,Base Insertion,26186,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,69,Cycle,Base Deletion,26186,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,7,Cycle,Base Substitution,27111,29.58,31.00,31.10,-0.10,Before
REGRESSION.HCC1395_tumor.L001,7,Cycle,Base Insertion,27111,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,7,Cycle,Base Deletion,27111,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,70,Cycle,Base Substitution,26309,33.35,30.00,31.78,-1.78,Before
REGRESSION.HCC1395_tumor.L001,70,Cycle,Base Insertion,26214,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,70,Cycle,Base Deletion,26214,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,71,Cycle,Base Substitution,26182,34.03,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L001,71,Cycle,Base Insertion,26079,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,71,Cycle,Base Deletion,26079,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,72,Cycle,Base Substitution,26121,36.50,30.00,31.62,-1.62,Before
REGRESSION.HCC1395_tumor.L001,72,Cycle,Base Insertion,26015,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,72,Cycle,Base Deletion,26015,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,73,Cycle,Base Substitution,26200,44.05,29.00,30.87,-1.87,Before
REGRESSION.HCC1395_tumor.L001,73,Cycle,Base Insertion,26075,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,73,Cycle,Base Deletion,26075,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,74,Cycle,Base Substitution,26138,41.76,30.00,31.38,-1.38,Before
REGRESSION.HCC1395_tumor.L001,74,Cycle,Base Insertion,26016,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,74,Cycle,Base Deletion,26016,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,75,Cycle,Base Substitution,26132,41.28,30.00,31.05,-1.05,Before
REGRESSION.HCC1395_tumor.L001,75,Cycle,Base Insertion,26001,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,75,Cycle,Base Deletion,26001,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,76,Cycle,Base Substitution,26179,33.45,30.00,31.00,-1.00,Before
REGRESSION.HCC1395_tumor.L001,76,Cycle,Base Insertion,26038,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,76,Cycle,Base Deletion,26038,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,77,Cycle,Base Substitution,26062,40.73,29.00,30.93,-1.93,Before
REGRESSION.HCC1395_tumor.L001,77,Cycle,Base Insertion,25923,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,77,Cycle,Base Deletion,25923,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,78,Cycle,Base Substitution,25906,37.17,29.00,30.95,-1.95,Before
REGRESSION.HCC1395_tumor.L001,78,Cycle,Base Insertion,25746,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,78,Cycle,Base Deletion,25746,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,79,Cycle,Base Substitution,25880,42.90,29.00,30.95,-1.95,Before
REGRESSION.HCC1395_tumor.L001,79,Cycle,Base Insertion,25707,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,79,Cycle,Base Deletion,25707,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,8,Cycle,Base Substitution,27096,30.91,31.00,31.57,-0.57,Before
REGRESSION.HCC1395_tumor.L001,8,Cycle,Base Insertion,27096,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,8,Cycle,Base Deletion,27096,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,80,Cycle,Base Substitution,25926,28.67,31.00,31.23,-0.23,Before
REGRESSION.HCC1395_tumor.L001,80,Cycle,Base Insertion,25756,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,80,Cycle,Base Deletion,25756,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,81,Cycle,Base Substitution,25853,39.65,29.00,30.94,-1.94,Before
REGRESSION.HCC1395_tumor.L001,81,Cycle,Base Insertion,25680,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,81,Cycle,Base Deletion,25680,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,82,Cycle,Base Substitution,25830,38.12,29.00,30.96,-1.96,Before
REGRESSION.HCC1395_tumor.L001,82,Cycle,Base Insertion,25652,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,82,Cycle,Base Deletion,25652,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,83,Cycle,Base Substitution,25847,46.78,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L001,83,Cycle,Base Insertion,25677,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,83,Cycle,Base Deletion,25677,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,84,Cycle,Base Substitution,25724,32.16,30.00,30.94,-0.94,Before
REGRESSION.HCC1395_tumor.L001,84,Cycle,Base Insertion,25533,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,84,Cycle,Base Deletion,25533,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,85,Cycle,Base Substitution,25742,31.64,30.00,31.16,-1.16,Before
REGRESSION.HCC1395_tumor.L001,85,Cycle,Base Insertion,25541,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,85,Cycle,Base Deletion,25541,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,86,Cycle,Base Substitution,25558,42.06,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L001,86,Cycle,Base Insertion,25381,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,86,Cycle,Base Deletion,25381,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,87,Cycle,Base Substitution,25570,39.92,29.00,30.93,-1.93,Before
REGRESSION.HCC1395_tumor.L001,87,Cycle,Base Insertion,25388,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,87,Cycle,Base Deletion,25388,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,88,Cycle,Base Substitution,25533,41.10,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L001,88,Cycle,Base Insertion,25350,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,88,Cycle,Base Deletion,25350,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,89,Cycle,Base Substitution,25563,40.80,29.00,30.77,-1.77,Before
REGRESSION.HCC1395_tumor.L001,89,Cycle,Base Insertion,25382,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,89,Cycle,Base Deletion,25382,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,9,Cycle,Base Substitution,27116,30.83,31.00,31.14,-0.14,Before
REGRESSION.HCC1395_tumor.L001,9,Cycle,Base Insertion,27116,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,9,Cycle,Base Deletion,27116,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,90,Cycle,Base Substitution,25570,44.87,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L001,90,Cycle,Base Insertion,25367,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,90,Cycle,Base Deletion,25367,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,91,Cycle,Base Substitution,25515,40.39,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L001,91,Cycle,Base Insertion,25321,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,91,Cycle,Base Deletion,25321,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,92,Cycle,Base Substitution,25509,42.28,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L001,92,Cycle,Base Insertion,25288,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,92,Cycle,Base Deletion,25288,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,93,Cycle,Base Substitution,25318,38.80,29.00,30.75,-1.75,Before
REGRESSION.HCC1395_tumor.L001,93,Cycle,Base Insertion,25084,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,93,Cycle,Base Deletion,25084,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,94,Cycle,Base Substitution,25356,44.12,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L001,94,Cycle,Base Insertion,25122,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,94,Cycle,Base Deletion,25122,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,95,Cycle,Base Substitution,25272,37.90,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L001,95,Cycle,Base Insertion,25021,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,95,Cycle,Base Deletion,25021,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,96,Cycle,Base Substitution,25217,47.96,29.00,30.80,-1.80,Before
REGRESSION.HCC1395_tumor.L001,96,Cycle,Base Insertion,24959,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,96,Cycle,Base Deletion,24959,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,97,Cycle,Base Substitution,25189,46.15,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L001,97,Cycle,Base Insertion,24941,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,97,Cycle,Base Deletion,24941,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,98,Cycle,Base Substitution,24984,43.90,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L001,98,Cycle,Base Insertion,24744,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,98,Cycle,Base Deletion,24744,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,99,Cycle,Base Substitution,24961,43.55,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L001,99,Cycle,Base Insertion,24735,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,99,Cycle,Base Deletion,24735,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,12,QualityScore,Base Substitution,78651,7466.23,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L001,24,QualityScore,Base Substitution,192910,793.67,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L001,40,QualityScore,Base Substitution,7318099,5423.36,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L001,45,QualityScore,Base Insertion,7589660,144.51,46.00,45.00,1.00,Before
REGRESSION.HCC1395_tumor.L001,45,QualityScore,Base Deletion,7589660,357.93,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L002,AA,Context,Base Substitution,537266,1439.23,26.00,29.46,-3.46,Before
REGRESSION.HCC1395_tumor.L002,AAA,Context,Base Insertion,182789,30.44,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L002,AAA,Context,Base Deletion,182789,80.88,41.00,45.00,-4.00,Before
REGRESSION.HCC1395_tumor.L002,AAC,Context,Base Insertion,87527,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AAC,Context,Base Deletion,87527,1.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AAG,Context,Base Insertion,137233,3.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AAG,Context,Base Deletion,137233,3.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AAT,Context,Base Insertion,104275,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AAT,Context,Base Deletion,104275,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AC,Context,Base Substitution,363221,1226.84,25.00,28.66,-3.66,Before
REGRESSION.HCC1395_tumor.L002,ACA,Context,Base Insertion,134614,5.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ACA,Context,Base Deletion,134614,7.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ACC,Context,Base Insertion,106437,3.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ACC,Context,Base Deletion,106437,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ACG,Context,Base Insertion,21076,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ACG,Context,Base Deletion,21076,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ACT,Context,Base Insertion,107018,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ACT,Context,Base Deletion,107018,5.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AG,Context,Base Substitution,573042,569.29,30.00,31.71,-1.71,Before
REGRESSION.HCC1395_tumor.L002,AGA,Context,Base Insertion,156037,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AGA,Context,Base Deletion,156037,3.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AGC,Context,Base Insertion,142231,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AGC,Context,Base Deletion,142231,4.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AGG,Context,Base Insertion,166591,6.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AGG,Context,Base Deletion,166591,3.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AGT,Context,Base Insertion,104457,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AGT,Context,Base Deletion,104457,3.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,AT,Context,Base Substitution,379341,515.63,29.00,32.00,-3.00,Before
REGRESSION.HCC1395_tumor.L002,ATA,Context,Base Insertion,76871,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ATA,Context,Base Deletion,76871,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ATC,Context,Base Insertion,81218,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ATC,Context,Base Deletion,81218,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ATG,Context,Base Insertion,117266,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ATG,Context,Base Deletion,117266,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ATT,Context,Base Insertion,111082,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,ATT,Context,Base Deletion,111082,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CA,Context,Base Substitution,605944,1363.48,27.00,29.82,-2.82,Before
REGRESSION.HCC1395_tumor.L002,CAA,Context,Base Insertion,114968,2.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CAA,Context,Base Deletion,114968,3.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CAC,Context,Base Insertion,127651,7.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CAC,Context,Base Deletion,127651,8.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CAG,Context,Base Insertion,216886,5.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CAG,Context,Base Deletion,216886,9.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CAT,Context,Base Insertion,113782,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CAT,Context,Base Deletion,113782,2.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CC,Context,Base Substitution,560163,1741.45,25.00,28.94,-3.94,Before
REGRESSION.HCC1395_tumor.L002,CCA,Context,Base Insertion,179878,2.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CCA,Context,Base Deletion,179878,2.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CCC,Context,Base Insertion,153479,8.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CCC,Context,Base Deletion,153479,8.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CCG,Context,Base Insertion,37758,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CCG,Context,Base Deletion,37758,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CCT,Context,Base Insertion,180819,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CCT,Context,Base Deletion,180819,5.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CG,Context,Base Substitution,114853,358.48,26.00,29.69,-3.69,Before
REGRESSION.HCC1395_tumor.L002,CGA,Context,Base Insertion,45123,2.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CGA,Context,Base Deletion,45123,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CGC,Context,Base Insertion,64423,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CGC,Context,Base Deletion,64423,3.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CGG,Context,Base Insertion,77605,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CGG,Context,Base Deletion,77605,3.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CGT,Context,Base Insertion,49935,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CGT,Context,Base Deletion,49935,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CT,Context,Base Substitution,607231,464.07,31.00,32.34,-1.34,Before
REGRESSION.HCC1395_tumor.L002,CTA,Context,Base Insertion,59455,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CTA,Context,Base Deletion,59455,4.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CTC,Context,Base Insertion,148885,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CTC,Context,Base Deletion,148885,7.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CTG,Context,Base Insertion,217247,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CTG,Context,Base Deletion,217247,7.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CTT,Context,Base Insertion,149056,3.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,CTT,Context,Base Deletion,149056,4.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GA,Context,Base Substitution,506236,874.21,28.00,29.48,-1.48,Before
REGRESSION.HCC1395_tumor.L002,GAA,Context,Base Insertion,144885,2.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GAA,Context,Base Deletion,144885,2.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GAC,Context,Base Insertion,84753,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GAC,Context,Base Deletion,84753,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GAG,Context,Base Insertion,153545,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GAG,Context,Base Deletion,153545,2.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GAT,Context,Base Insertion,85612,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GAT,Context,Base Deletion,85612,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GC,Context,Base Substitution,495844,1199.64,26.00,30.11,-4.11,Before
REGRESSION.HCC1395_tumor.L002,GCA,Context,Base Insertion,151880,1.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GCA,Context,Base Deletion,151880,2.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GCC,Context,Base Insertion,148997,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GCC,Context,Base Deletion,148997,6.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GCG,Context,Base Insertion,36240,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GCG,Context,Base Deletion,36240,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GCT,Context,Base Insertion,158514,2.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GCT,Context,Base Deletion,158514,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GG,Context,Base Substitution,585000,765.35,29.00,31.65,-2.65,Before
REGRESSION.HCC1395_tumor.L002,GGA,Context,Base Insertion,159126,3.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GGA,Context,Base Deletion,159126,5.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GGC,Context,Base Insertion,147029,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GGC,Context,Base Deletion,147029,3.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GGG,Context,Base Insertion,159542,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GGG,Context,Base Deletion,159542,7.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GGT,Context,Base Insertion,117042,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GGT,Context,Base Deletion,117042,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GT,Context,Base Substitution,414840,726.51,28.00,31.97,-3.97,Before
REGRESSION.HCC1395_tumor.L002,GTA,Context,Base Insertion,67414,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GTA,Context,Base Deletion,67414,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GTC,Context,Base Insertion,92190,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GTC,Context,Base Deletion,92190,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GTG,Context,Base Insertion,142190,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GTG,Context,Base Deletion,142190,8.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GTT,Context,Base Insertion,101604,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,GTT,Context,Base Deletion,101604,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TA,Context,Base Substitution,294868,841.97,26.00,29.49,-3.49,Before
REGRESSION.HCC1395_tumor.L002,TAA,Context,Base Insertion,89874,2.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TAA,Context,Base Deletion,89874,4.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TAC,Context,Base Insertion,60874,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TAC,Context,Base Deletion,60874,4.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TAG,Context,Base Insertion,60920,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TAG,Context,Base Deletion,60920,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TAT,Context,Base Insertion,72859,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TAT,Context,Base Deletion,72859,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TC,Context,Base Substitution,457094,1110.13,26.00,30.42,-4.42,Before
REGRESSION.HCC1395_tumor.L002,TCA,Context,Base Insertion,134776,2.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TCA,Context,Base Deletion,134776,4.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TCC,Context,Base Insertion,147568,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TCC,Context,Base Deletion,147568,3.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TCG,Context,Base Insertion,18890,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TCG,Context,Base Deletion,18890,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TCT,Context,Base Insertion,156735,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TCT,Context,Base Deletion,156735,6.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TG,Context,Base Substitution,597990,468.34,31.00,31.70,-0.70,Before
REGRESSION.HCC1395_tumor.L002,TGA,Context,Base Insertion,142155,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TGA,Context,Base Deletion,142155,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TGC,Context,Base Insertion,138940,2.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TGC,Context,Base Deletion,138940,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TGG,Context,Base Insertion,176988,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TGG,Context,Base Deletion,176988,4.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TGT,Context,Base Insertion,140634,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TGT,Context,Base Deletion,140634,9.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TT,Context,Base Substitution,549306,694.25,29.00,32.86,-3.86,Before
REGRESSION.HCC1395_tumor.L002,TTA,Context,Base Insertion,88881,3.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TTA,Context,Base Deletion,88881,3.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TTC,Context,Base Insertion,131980,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TTC,Context,Base Deletion,131980,5.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TTG,Context,Base Insertion,117016,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TTG,Context,Base Deletion,117016,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,TTT,Context,Base Insertion,183769,22.94,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L002,TTT,Context,Base Deletion,183769,55.79,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L002,-1,Cycle,Base Substitution,27294,104.82,24.00,25.87,-1.87,Before
REGRESSION.HCC1395_tumor.L002,-10,Cycle,Base Substitution,27440,39.72,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L002,-10,Cycle,Base Insertion,27440,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-10,Cycle,Base Deletion,27440,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-100,Cycle,Base Substitution,25347,56.12,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L002,-100,Cycle,Base Insertion,25091,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-100,Cycle,Base Deletion,25091,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-101,Cycle,Base Substitution,25307,43.03,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L002,-101,Cycle,Base Insertion,25024,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-101,Cycle,Base Deletion,25024,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-102,Cycle,Base Substitution,25224,57.73,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L002,-102,Cycle,Base Insertion,24960,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-102,Cycle,Base Deletion,24960,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-103,Cycle,Base Substitution,25169,49.82,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L002,-103,Cycle,Base Insertion,24881,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-103,Cycle,Base Deletion,24881,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-104,Cycle,Base Substitution,25267,49.61,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L002,-104,Cycle,Base Insertion,24971,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-104,Cycle,Base Deletion,24971,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-105,Cycle,Base Substitution,25123,39.89,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L002,-105,Cycle,Base Insertion,24864,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-105,Cycle,Base Deletion,24864,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-106,Cycle,Base Substitution,24974,49.12,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L002,-106,Cycle,Base Insertion,24722,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-106,Cycle,Base Deletion,24722,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-107,Cycle,Base Substitution,24949,45.91,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L002,-107,Cycle,Base Insertion,24699,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-107,Cycle,Base Deletion,24699,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-108,Cycle,Base Substitution,24841,63.65,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L002,-108,Cycle,Base Insertion,24598,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-108,Cycle,Base Deletion,24598,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-109,Cycle,Base Substitution,24775,34.15,30.00,30.25,-0.25,Before
REGRESSION.HCC1395_tumor.L002,-109,Cycle,Base Insertion,24514,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-109,Cycle,Base Deletion,24514,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-11,Cycle,Base Substitution,27401,30.38,31.00,31.21,-0.21,Before
REGRESSION.HCC1395_tumor.L002,-11,Cycle,Base Insertion,27401,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-11,Cycle,Base Deletion,27401,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-110,Cycle,Base Substitution,24784,57.58,28.00,29.60,-1.60,Before
REGRESSION.HCC1395_tumor.L002,-110,Cycle,Base Insertion,24502,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-110,Cycle,Base Deletion,24502,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-111,Cycle,Base Substitution,24746,49.91,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L002,-111,Cycle,Base Insertion,24483,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-111,Cycle,Base Deletion,24483,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-112,Cycle,Base Substitution,24628,57.96,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L002,-112,Cycle,Base Insertion,24356,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-112,Cycle,Base Deletion,24356,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-113,Cycle,Base Substitution,24629,53.81,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L002,-113,Cycle,Base Insertion,24381,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-113,Cycle,Base Deletion,24381,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-114,Cycle,Base Substitution,24509,50.03,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L002,-114,Cycle,Base Insertion,24260,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-114,Cycle,Base Deletion,24260,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-115,Cycle,Base Substitution,24421,44.70,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L002,-115,Cycle,Base Insertion,24162,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-115,Cycle,Base Deletion,24162,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-116,Cycle,Base Substitution,24529,49.24,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L002,-116,Cycle,Base Insertion,24239,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-116,Cycle,Base Deletion,24239,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-117,Cycle,Base Substitution,24271,46.64,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L002,-117,Cycle,Base Insertion,23965,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-117,Cycle,Base Deletion,23965,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-118,Cycle,Base Substitution,24266,47.35,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L002,-118,Cycle,Base Insertion,23968,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-118,Cycle,Base Deletion,23968,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-119,Cycle,Base Substitution,24166,59.27,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L002,-119,Cycle,Base Insertion,23853,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-119,Cycle,Base Deletion,23853,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-12,Cycle,Base Substitution,27516,36.41,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L002,-12,Cycle,Base Insertion,27516,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-12,Cycle,Base Deletion,27516,2.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-120,Cycle,Base Substitution,24108,56.32,28.00,29.64,-1.64,Before
REGRESSION.HCC1395_tumor.L002,-120,Cycle,Base Insertion,23833,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-120,Cycle,Base Deletion,23833,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-121,Cycle,Base Substitution,24068,52.06,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L002,-121,Cycle,Base Insertion,23792,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-121,Cycle,Base Deletion,23792,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-122,Cycle,Base Substitution,24093,45.25,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L002,-122,Cycle,Base Insertion,23791,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-122,Cycle,Base Deletion,23791,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-123,Cycle,Base Substitution,24031,47.86,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L002,-123,Cycle,Base Insertion,23730,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-123,Cycle,Base Deletion,23730,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-124,Cycle,Base Substitution,23868,44.61,28.00,29.71,-1.71,Before
REGRESSION.HCC1395_tumor.L002,-124,Cycle,Base Insertion,23583,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-124,Cycle,Base Deletion,23583,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-125,Cycle,Base Substitution,23787,44.74,28.00,29.63,-1.63,Before
REGRESSION.HCC1395_tumor.L002,-125,Cycle,Base Insertion,23469,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-125,Cycle,Base Deletion,23469,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-126,Cycle,Base Substitution,23785,59.28,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L002,-126,Cycle,Base Insertion,23475,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-126,Cycle,Base Deletion,23475,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-127,Cycle,Base Substitution,23572,59.44,28.00,29.68,-1.68,Before
REGRESSION.HCC1395_tumor.L002,-127,Cycle,Base Insertion,23272,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-127,Cycle,Base Deletion,23272,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-128,Cycle,Base Substitution,23584,41.44,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L002,-128,Cycle,Base Insertion,23264,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-128,Cycle,Base Deletion,23264,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-129,Cycle,Base Substitution,23491,45.71,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L002,-129,Cycle,Base Insertion,23184,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-129,Cycle,Base Deletion,23184,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-13,Cycle,Base Substitution,27483,38.26,31.00,32.11,-1.11,Before
REGRESSION.HCC1395_tumor.L002,-13,Cycle,Base Insertion,27483,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-13,Cycle,Base Deletion,27483,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-130,Cycle,Base Substitution,23464,42.60,28.00,29.61,-1.61,Before
REGRESSION.HCC1395_tumor.L002,-130,Cycle,Base Insertion,23164,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-130,Cycle,Base Deletion,23164,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-131,Cycle,Base Substitution,23418,44.20,28.00,29.68,-1.68,Before
REGRESSION.HCC1395_tumor.L002,-131,Cycle,Base Insertion,23109,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-131,Cycle,Base Deletion,23109,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-132,Cycle,Base Substitution,23379,54.71,28.00,29.34,-1.34,Before
REGRESSION.HCC1395_tumor.L002,-132,Cycle,Base Insertion,23059,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-132,Cycle,Base Deletion,23059,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-133,Cycle,Base Substitution,23207,45.52,28.00,29.57,-1.57,Before
REGRESSION.HCC1395_tumor.L002,-133,Cycle,Base Insertion,22883,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-133,Cycle,Base Deletion,22883,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-134,Cycle,Base Substitution,23195,46.19,28.00,29.57,-1.57,Before
REGRESSION.HCC1395_tumor.L002,-134,Cycle,Base Insertion,22861,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-134,Cycle,Base Deletion,22861,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-135,Cycle,Base Substitution,23093,57.41,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L002,-135,Cycle,Base Insertion,22761,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-135,Cycle,Base Deletion,22761,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-136,Cycle,Base Substitution,22978,37.98,29.00,29.80,-0.80,Before
REGRESSION.HCC1395_tumor.L002,-136,Cycle,Base Insertion,22630,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-136,Cycle,Base Deletion,22630,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-137,Cycle,Base Substitution,22967,42.67,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L002,-137,Cycle,Base Insertion,22616,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-137,Cycle,Base Deletion,22616,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-138,Cycle,Base Substitution,22860,57.96,28.00,29.53,-1.53,Before
REGRESSION.HCC1395_tumor.L002,-138,Cycle,Base Insertion,22502,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-138,Cycle,Base Deletion,22502,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-139,Cycle,Base Substitution,22813,48.82,28.00,29.37,-1.37,Before
REGRESSION.HCC1395_tumor.L002,-139,Cycle,Base Insertion,22429,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-139,Cycle,Base Deletion,22429,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-14,Cycle,Base Substitution,27462,39.41,30.00,31.40,-1.40,Before
REGRESSION.HCC1395_tumor.L002,-14,Cycle,Base Insertion,27462,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-14,Cycle,Base Deletion,27462,2.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-140,Cycle,Base Substitution,22711,59.00,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L002,-140,Cycle,Base Insertion,22309,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-140,Cycle,Base Deletion,22309,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-141,Cycle,Base Substitution,22771,46.17,28.00,29.56,-1.56,Before
REGRESSION.HCC1395_tumor.L002,-141,Cycle,Base Insertion,22326,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-141,Cycle,Base Deletion,22326,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-142,Cycle,Base Substitution,22640,43.77,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L002,-142,Cycle,Base Insertion,22146,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-142,Cycle,Base Deletion,22146,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-143,Cycle,Base Substitution,22439,30.82,29.00,29.97,-0.97,Before
REGRESSION.HCC1395_tumor.L002,-143,Cycle,Base Insertion,21926,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-143,Cycle,Base Deletion,21926,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-144,Cycle,Base Substitution,22391,28.37,29.00,29.82,-0.82,Before
REGRESSION.HCC1395_tumor.L002,-144,Cycle,Base Insertion,21871,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-144,Cycle,Base Deletion,21871,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-145,Cycle,Base Substitution,22319,45.09,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L002,-145,Cycle,Base Insertion,17088,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-145,Cycle,Base Deletion,17088,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-146,Cycle,Base Substitution,22090,74.54,27.00,29.93,-2.93,Before
REGRESSION.HCC1395_tumor.L002,-146,Cycle,Base Insertion,16991,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-146,Cycle,Base Deletion,16991,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-147,Cycle,Base Substitution,22017,253.08,22.00,30.05,-8.05,Before
REGRESSION.HCC1395_tumor.L002,-148,Cycle,Base Substitution,21823,891.35,15.00,30.00,-15.00,Before
REGRESSION.HCC1395_tumor.L002,-149,Cycle,Base Substitution,13484,804.86,14.00,30.77,-16.77,Before
REGRESSION.HCC1395_tumor.L002,-15,Cycle,Base Substitution,27453,47.94,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L002,-15,Cycle,Base Insertion,27453,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-15,Cycle,Base Deletion,27453,2.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-150,Cycle,Base Substitution,4766,8.16,30.00,30.52,-0.52,Before
REGRESSION.HCC1395_tumor.L002,-16,Cycle,Base Substitution,27505,37.64,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L002,-16,Cycle,Base Insertion,27505,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-16,Cycle,Base Deletion,27505,2.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-17,Cycle,Base Substitution,27491,49.36,30.00,31.49,-1.49,Before
REGRESSION.HCC1395_tumor.L002,-17,Cycle,Base Insertion,27491,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-17,Cycle,Base Deletion,27491,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-18,Cycle,Base Substitution,27378,55.53,29.00,31.28,-2.28,Before
REGRESSION.HCC1395_tumor.L002,-18,Cycle,Base Insertion,27378,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-18,Cycle,Base Deletion,27378,1.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-19,Cycle,Base Substitution,27435,38.60,30.00,31.63,-1.63,Before
REGRESSION.HCC1395_tumor.L002,-19,Cycle,Base Insertion,27435,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-19,Cycle,Base Deletion,27435,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-2,Cycle,Base Substitution,27645,78.87,27.00,28.35,-1.35,Before
REGRESSION.HCC1395_tumor.L002,-20,Cycle,Base Substitution,27416,37.87,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L002,-20,Cycle,Base Insertion,27416,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-20,Cycle,Base Deletion,27416,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-21,Cycle,Base Substitution,27361,45.17,30.00,31.96,-1.96,Before
REGRESSION.HCC1395_tumor.L002,-21,Cycle,Base Insertion,27361,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-21,Cycle,Base Deletion,27361,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-22,Cycle,Base Substitution,27319,34.73,30.00,31.53,-1.53,Before
REGRESSION.HCC1395_tumor.L002,-22,Cycle,Base Insertion,27319,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-22,Cycle,Base Deletion,27319,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-23,Cycle,Base Substitution,27425,33.87,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L002,-23,Cycle,Base Insertion,27425,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-23,Cycle,Base Deletion,27425,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-24,Cycle,Base Substitution,27399,37.97,30.00,31.67,-1.67,Before
REGRESSION.HCC1395_tumor.L002,-24,Cycle,Base Insertion,27399,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-24,Cycle,Base Deletion,27399,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-25,Cycle,Base Substitution,27373,36.93,30.00,31.44,-1.44,Before
REGRESSION.HCC1395_tumor.L002,-25,Cycle,Base Insertion,27373,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-25,Cycle,Base Deletion,27373,1.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-26,Cycle,Base Substitution,27360,37.64,30.00,30.11,-0.11,Before
REGRESSION.HCC1395_tumor.L002,-26,Cycle,Base Insertion,27360,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-26,Cycle,Base Deletion,27360,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-27,Cycle,Base Substitution,27347,30.05,30.00,30.60,-0.60,Before
REGRESSION.HCC1395_tumor.L002,-27,Cycle,Base Insertion,27346,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-27,Cycle,Base Deletion,27346,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-28,Cycle,Base Substitution,27352,44.76,29.00,29.93,-0.93,Before
REGRESSION.HCC1395_tumor.L002,-28,Cycle,Base Insertion,27351,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-28,Cycle,Base Deletion,27351,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-29,Cycle,Base Substitution,27395,41.27,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L002,-29,Cycle,Base Insertion,27393,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-29,Cycle,Base Deletion,27393,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-3,Cycle,Base Substitution,27665,75.95,27.00,29.64,-2.64,Before
REGRESSION.HCC1395_tumor.L002,-30,Cycle,Base Substitution,27356,39.60,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L002,-30,Cycle,Base Insertion,27354,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-30,Cycle,Base Deletion,27354,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-31,Cycle,Base Substitution,27244,46.31,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L002,-31,Cycle,Base Insertion,27243,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-31,Cycle,Base Deletion,27243,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-32,Cycle,Base Substitution,27339,37.93,30.00,30.39,-0.39,Before
REGRESSION.HCC1395_tumor.L002,-32,Cycle,Base Insertion,27338,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-32,Cycle,Base Deletion,27338,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-33,Cycle,Base Substitution,27255,44.50,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L002,-33,Cycle,Base Insertion,27255,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-33,Cycle,Base Deletion,27255,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-34,Cycle,Base Substitution,27279,42.54,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L002,-34,Cycle,Base Insertion,27278,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-34,Cycle,Base Deletion,27278,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-35,Cycle,Base Substitution,27257,46.74,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L002,-35,Cycle,Base Insertion,27255,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-35,Cycle,Base Deletion,27255,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-36,Cycle,Base Substitution,27221,37.47,30.00,30.21,-0.21,Before
REGRESSION.HCC1395_tumor.L002,-36,Cycle,Base Insertion,27220,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-36,Cycle,Base Deletion,27220,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-37,Cycle,Base Substitution,27224,38.45,30.00,30.15,-0.15,Before
REGRESSION.HCC1395_tumor.L002,-37,Cycle,Base Insertion,27221,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-37,Cycle,Base Deletion,27221,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-38,Cycle,Base Substitution,27193,38.91,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L002,-38,Cycle,Base Insertion,27190,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-38,Cycle,Base Deletion,27190,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-39,Cycle,Base Substitution,27238,52.45,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L002,-39,Cycle,Base Insertion,27235,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-39,Cycle,Base Deletion,27235,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-4,Cycle,Base Substitution,27599,78.63,27.00,29.80,-2.80,Before
REGRESSION.HCC1395_tumor.L002,-40,Cycle,Base Substitution,27243,39.65,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L002,-40,Cycle,Base Insertion,27241,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-40,Cycle,Base Deletion,27241,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-41,Cycle,Base Substitution,27171,37.17,30.00,30.25,-0.25,Before
REGRESSION.HCC1395_tumor.L002,-41,Cycle,Base Insertion,27170,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-41,Cycle,Base Deletion,27170,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-42,Cycle,Base Substitution,27128,32.17,30.00,30.26,-0.26,Before
REGRESSION.HCC1395_tumor.L002,-42,Cycle,Base Insertion,27127,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-42,Cycle,Base Deletion,27127,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-43,Cycle,Base Substitution,27201,48.63,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L002,-43,Cycle,Base Insertion,27198,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-43,Cycle,Base Deletion,27198,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-44,Cycle,Base Substitution,27064,35.47,30.00,30.48,-0.48,Before
REGRESSION.HCC1395_tumor.L002,-44,Cycle,Base Insertion,27060,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-44,Cycle,Base Deletion,27060,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-45,Cycle,Base Substitution,27223,35.54,30.00,30.39,-0.39,Before
REGRESSION.HCC1395_tumor.L002,-45,Cycle,Base Insertion,27218,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-45,Cycle,Base Deletion,27218,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-46,Cycle,Base Substitution,27135,35.04,30.00,30.69,-0.69,Before
REGRESSION.HCC1395_tumor.L002,-46,Cycle,Base Insertion,27128,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-46,Cycle,Base Deletion,27128,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-47,Cycle,Base Substitution,27109,34.03,30.00,30.55,-0.55,Before
REGRESSION.HCC1395_tumor.L002,-47,Cycle,Base Insertion,27104,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-47,Cycle,Base Deletion,27104,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-48,Cycle,Base Substitution,27111,31.13,30.00,30.54,-0.54,Before
REGRESSION.HCC1395_tumor.L002,-48,Cycle,Base Insertion,27102,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-48,Cycle,Base Deletion,27102,2.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-49,Cycle,Base Substitution,27183,40.38,29.00,30.61,-1.61,Before
REGRESSION.HCC1395_tumor.L002,-49,Cycle,Base Insertion,27171,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-49,Cycle,Base Deletion,27171,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-5,Cycle,Base Substitution,27568,59.37,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L002,-5,Cycle,Base Insertion,27568,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-5,Cycle,Base Deletion,27568,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-50,Cycle,Base Substitution,27022,43.75,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L002,-50,Cycle,Base Insertion,27001,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-50,Cycle,Base Deletion,27001,2.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-51,Cycle,Base Substitution,27048,39.36,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L002,-51,Cycle,Base Insertion,27023,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-51,Cycle,Base Deletion,27023,2.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-52,Cycle,Base Substitution,27086,44.84,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L002,-52,Cycle,Base Insertion,27059,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-52,Cycle,Base Deletion,27059,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-53,Cycle,Base Substitution,27039,33.91,30.00,30.54,-0.54,Before
REGRESSION.HCC1395_tumor.L002,-53,Cycle,Base Insertion,27009,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-53,Cycle,Base Deletion,27009,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-54,Cycle,Base Substitution,27032,46.68,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L002,-54,Cycle,Base Insertion,27006,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-54,Cycle,Base Deletion,27006,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-55,Cycle,Base Substitution,27157,35.47,30.00,30.62,-0.62,Before
REGRESSION.HCC1395_tumor.L002,-55,Cycle,Base Insertion,27124,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-55,Cycle,Base Deletion,27124,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-56,Cycle,Base Substitution,27054,45.11,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L002,-56,Cycle,Base Insertion,27022,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-56,Cycle,Base Deletion,27022,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-57,Cycle,Base Substitution,27027,44.28,29.00,30.79,-1.79,Before
REGRESSION.HCC1395_tumor.L002,-57,Cycle,Base Insertion,26982,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-57,Cycle,Base Deletion,26982,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-58,Cycle,Base Substitution,27066,40.22,29.00,30.97,-1.97,Before
REGRESSION.HCC1395_tumor.L002,-58,Cycle,Base Insertion,27010,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-58,Cycle,Base Deletion,27010,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-59,Cycle,Base Substitution,26992,36.10,30.00,30.58,-0.58,Before
REGRESSION.HCC1395_tumor.L002,-59,Cycle,Base Insertion,26931,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-59,Cycle,Base Deletion,26931,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-6,Cycle,Base Substitution,27500,50.09,29.00,30.70,-1.70,Before
REGRESSION.HCC1395_tumor.L002,-6,Cycle,Base Insertion,27500,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-6,Cycle,Base Deletion,27500,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-60,Cycle,Base Substitution,26838,40.54,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L002,-60,Cycle,Base Insertion,26774,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-60,Cycle,Base Deletion,26774,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-61,Cycle,Base Substitution,27053,45.20,29.00,30.51,-1.51,Before
REGRESSION.HCC1395_tumor.L002,-61,Cycle,Base Insertion,26986,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-61,Cycle,Base Deletion,26986,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-62,Cycle,Base Substitution,26932,31.96,30.00,30.71,-0.71,Before
REGRESSION.HCC1395_tumor.L002,-62,Cycle,Base Insertion,26867,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-62,Cycle,Base Deletion,26867,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-63,Cycle,Base Substitution,26871,35.47,30.00,30.75,-0.75,Before
REGRESSION.HCC1395_tumor.L002,-63,Cycle,Base Insertion,26814,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-63,Cycle,Base Deletion,26814,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-64,Cycle,Base Substitution,26826,34.91,30.00,30.83,-0.83,Before
REGRESSION.HCC1395_tumor.L002,-64,Cycle,Base Insertion,26755,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-64,Cycle,Base Deletion,26755,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-65,Cycle,Base Substitution,26705,41.28,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L002,-65,Cycle,Base Insertion,26627,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-65,Cycle,Base Deletion,26627,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-66,Cycle,Base Substitution,26714,43.83,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L002,-66,Cycle,Base Insertion,26638,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-66,Cycle,Base Deletion,26638,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-67,Cycle,Base Substitution,26754,37.50,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L002,-67,Cycle,Base Insertion,26661,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-67,Cycle,Base Deletion,26661,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-68,Cycle,Base Substitution,26695,48.49,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L002,-68,Cycle,Base Insertion,26605,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-68,Cycle,Base Deletion,26605,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-69,Cycle,Base Substitution,26694,36.50,30.00,30.51,-0.51,Before
REGRESSION.HCC1395_tumor.L002,-69,Cycle,Base Insertion,26606,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-69,Cycle,Base Deletion,26606,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-7,Cycle,Base Substitution,27519,43.99,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L002,-7,Cycle,Base Insertion,27519,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-7,Cycle,Base Deletion,27519,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-70,Cycle,Base Substitution,26694,44.47,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L002,-70,Cycle,Base Insertion,26590,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-70,Cycle,Base Deletion,26590,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-71,Cycle,Base Substitution,26684,40.97,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L002,-71,Cycle,Base Insertion,26573,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-71,Cycle,Base Deletion,26573,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-72,Cycle,Base Substitution,26693,45.00,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L002,-72,Cycle,Base Insertion,26572,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-72,Cycle,Base Deletion,26572,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-73,Cycle,Base Substitution,26696,48.65,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L002,-73,Cycle,Base Insertion,26578,1.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-73,Cycle,Base Deletion,26578,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-74,Cycle,Base Substitution,26527,47.03,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L002,-74,Cycle,Base Insertion,26407,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-74,Cycle,Base Deletion,26407,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-75,Cycle,Base Substitution,26561,35.60,30.00,30.34,-0.34,Before
REGRESSION.HCC1395_tumor.L002,-75,Cycle,Base Insertion,26427,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-75,Cycle,Base Deletion,26427,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-76,Cycle,Base Substitution,26466,47.38,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L002,-76,Cycle,Base Insertion,26341,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-76,Cycle,Base Deletion,26341,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-77,Cycle,Base Substitution,26454,37.65,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L002,-77,Cycle,Base Insertion,26321,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-77,Cycle,Base Deletion,26321,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-78,Cycle,Base Substitution,26476,45.89,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L002,-78,Cycle,Base Insertion,26329,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-78,Cycle,Base Deletion,26329,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-79,Cycle,Base Substitution,26408,38.03,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L002,-79,Cycle,Base Insertion,26257,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-79,Cycle,Base Deletion,26257,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-8,Cycle,Base Substitution,27396,39.79,29.00,30.61,-1.61,Before
REGRESSION.HCC1395_tumor.L002,-8,Cycle,Base Insertion,27396,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-8,Cycle,Base Deletion,27396,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-80,Cycle,Base Substitution,26364,47.79,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L002,-80,Cycle,Base Insertion,26198,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-80,Cycle,Base Deletion,26198,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-81,Cycle,Base Substitution,26333,44.30,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L002,-81,Cycle,Base Insertion,26161,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-81,Cycle,Base Deletion,26161,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-82,Cycle,Base Substitution,26407,47.71,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L002,-82,Cycle,Base Insertion,26227,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-82,Cycle,Base Deletion,26227,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-83,Cycle,Base Substitution,26223,44.08,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L002,-83,Cycle,Base Insertion,26052,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-83,Cycle,Base Deletion,26052,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-84,Cycle,Base Substitution,26222,45.21,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L002,-84,Cycle,Base Insertion,26049,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-84,Cycle,Base Deletion,26049,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-85,Cycle,Base Substitution,26172,29.87,30.00,30.18,-0.18,Before
REGRESSION.HCC1395_tumor.L002,-85,Cycle,Base Insertion,25989,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-85,Cycle,Base Deletion,25989,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-86,Cycle,Base Substitution,26143,49.59,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L002,-86,Cycle,Base Insertion,25962,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-86,Cycle,Base Deletion,25962,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-87,Cycle,Base Substitution,26177,36.68,30.00,30.49,-0.49,Before
REGRESSION.HCC1395_tumor.L002,-87,Cycle,Base Insertion,25974,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-87,Cycle,Base Deletion,25974,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-88,Cycle,Base Substitution,26121,40.00,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L002,-88,Cycle,Base Insertion,25910,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-88,Cycle,Base Deletion,25910,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-89,Cycle,Base Substitution,26037,46.81,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L002,-89,Cycle,Base Insertion,25820,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-89,Cycle,Base Deletion,25820,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-9,Cycle,Base Substitution,27499,33.97,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L002,-9,Cycle,Base Insertion,27499,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-9,Cycle,Base Deletion,27499,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-90,Cycle,Base Substitution,25818,60.74,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L002,-90,Cycle,Base Insertion,25606,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-90,Cycle,Base Deletion,25606,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-91,Cycle,Base Substitution,26016,38.49,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L002,-91,Cycle,Base Insertion,25805,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-91,Cycle,Base Deletion,25805,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-92,Cycle,Base Substitution,25919,61.43,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L002,-92,Cycle,Base Insertion,25717,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-92,Cycle,Base Deletion,25717,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-93,Cycle,Base Substitution,25747,40.12,29.00,30.61,-1.61,Before
REGRESSION.HCC1395_tumor.L002,-93,Cycle,Base Insertion,25533,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-93,Cycle,Base Deletion,25533,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-94,Cycle,Base Substitution,25770,59.70,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L002,-94,Cycle,Base Insertion,25539,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-94,Cycle,Base Deletion,25539,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-95,Cycle,Base Substitution,25592,50.61,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L002,-95,Cycle,Base Insertion,25367,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-95,Cycle,Base Deletion,25367,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-96,Cycle,Base Substitution,25588,46.28,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L002,-96,Cycle,Base Insertion,25358,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-96,Cycle,Base Deletion,25358,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-97,Cycle,Base Substitution,25485,42.63,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L002,-97,Cycle,Base Insertion,25260,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-97,Cycle,Base Deletion,25260,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-98,Cycle,Base Substitution,25487,49.09,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L002,-98,Cycle,Base Insertion,25237,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-98,Cycle,Base Deletion,25237,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-99,Cycle,Base Substitution,25397,47.10,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L002,-99,Cycle,Base Insertion,25147,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,-99,Cycle,Base Deletion,25147,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,1,Cycle,Base Substitution,27043,61.94,27.00,28.43,-1.43,Before
REGRESSION.HCC1395_tumor.L002,10,Cycle,Base Substitution,27326,39.12,30.00,31.13,-1.13,Before
REGRESSION.HCC1395_tumor.L002,10,Cycle,Base Insertion,27326,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,10,Cycle,Base Deletion,27326,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,100,Cycle,Base Substitution,25156,43.29,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L002,100,Cycle,Base Insertion,24899,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,100,Cycle,Base Deletion,24899,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,101,Cycle,Base Substitution,25085,47.51,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L002,101,Cycle,Base Insertion,24813,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,101,Cycle,Base Deletion,24813,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,102,Cycle,Base Substitution,25100,46.71,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L002,102,Cycle,Base Insertion,24846,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,102,Cycle,Base Deletion,24846,2.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,103,Cycle,Base Substitution,24966,37.99,29.00,30.35,-1.35,Before
REGRESSION.HCC1395_tumor.L002,103,Cycle,Base Insertion,24684,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,103,Cycle,Base Deletion,24684,2.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,104,Cycle,Base Substitution,24930,48.71,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L002,104,Cycle,Base Insertion,24647,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,104,Cycle,Base Deletion,24647,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,105,Cycle,Base Substitution,24855,39.37,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L002,105,Cycle,Base Insertion,24590,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,105,Cycle,Base Deletion,24590,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,106,Cycle,Base Substitution,24807,40.84,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L002,106,Cycle,Base Insertion,24542,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,106,Cycle,Base Deletion,24542,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,107,Cycle,Base Substitution,24797,51.08,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L002,107,Cycle,Base Insertion,24552,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,107,Cycle,Base Deletion,24552,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,108,Cycle,Base Substitution,24644,56.86,29.00,30.00,-1.00,Before
REGRESSION.HCC1395_tumor.L002,108,Cycle,Base Insertion,24404,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,108,Cycle,Base Deletion,24404,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,109,Cycle,Base Substitution,24634,43.73,28.00,29.84,-1.84,Before
REGRESSION.HCC1395_tumor.L002,109,Cycle,Base Insertion,24368,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,109,Cycle,Base Deletion,24368,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,11,Cycle,Base Substitution,27346,33.32,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L002,11,Cycle,Base Insertion,27346,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,11,Cycle,Base Deletion,27346,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,110,Cycle,Base Substitution,24632,45.36,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L002,110,Cycle,Base Insertion,24356,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,110,Cycle,Base Deletion,24356,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,111,Cycle,Base Substitution,24592,42.62,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L002,111,Cycle,Base Insertion,24327,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,111,Cycle,Base Deletion,24327,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,112,Cycle,Base Substitution,24403,41.49,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L002,112,Cycle,Base Insertion,24149,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,112,Cycle,Base Deletion,24149,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,113,Cycle,Base Substitution,24259,34.84,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L002,113,Cycle,Base Insertion,24026,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,113,Cycle,Base Deletion,24026,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,114,Cycle,Base Substitution,24363,43.12,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L002,114,Cycle,Base Insertion,24110,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,114,Cycle,Base Deletion,24110,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,115,Cycle,Base Substitution,24242,41.92,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L002,115,Cycle,Base Insertion,23991,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,115,Cycle,Base Deletion,23991,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,116,Cycle,Base Substitution,24095,51.13,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L002,116,Cycle,Base Insertion,23808,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,116,Cycle,Base Deletion,23808,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,117,Cycle,Base Substitution,24117,56.50,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L002,117,Cycle,Base Insertion,23820,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,117,Cycle,Base Deletion,23820,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,118,Cycle,Base Substitution,24109,41.91,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L002,118,Cycle,Base Insertion,23804,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,118,Cycle,Base Deletion,23804,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,119,Cycle,Base Substitution,24022,40.39,29.00,29.94,-0.94,Before
REGRESSION.HCC1395_tumor.L002,119,Cycle,Base Insertion,23725,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,119,Cycle,Base Deletion,23725,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,12,Cycle,Base Substitution,27317,32.23,31.00,31.03,-0.03,Before
REGRESSION.HCC1395_tumor.L002,12,Cycle,Base Insertion,27317,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,12,Cycle,Base Deletion,27317,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,120,Cycle,Base Substitution,23904,42.22,28.00,29.97,-1.97,Before
REGRESSION.HCC1395_tumor.L002,120,Cycle,Base Insertion,23623,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,120,Cycle,Base Deletion,23623,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,121,Cycle,Base Substitution,23869,53.23,28.00,29.74,-1.74,Before
REGRESSION.HCC1395_tumor.L002,121,Cycle,Base Insertion,23606,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,121,Cycle,Base Deletion,23606,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,122,Cycle,Base Substitution,23739,39.11,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L002,122,Cycle,Base Insertion,23452,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,122,Cycle,Base Deletion,23452,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,123,Cycle,Base Substitution,23810,42.78,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L002,123,Cycle,Base Insertion,23533,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,123,Cycle,Base Deletion,23533,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,124,Cycle,Base Substitution,23745,60.01,28.00,29.91,-1.91,Before
REGRESSION.HCC1395_tumor.L002,124,Cycle,Base Insertion,23441,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,124,Cycle,Base Deletion,23441,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,125,Cycle,Base Substitution,23577,52.18,28.00,29.64,-1.64,Before
REGRESSION.HCC1395_tumor.L002,125,Cycle,Base Insertion,23264,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,125,Cycle,Base Deletion,23264,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,126,Cycle,Base Substitution,23548,50.71,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L002,126,Cycle,Base Insertion,23261,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,126,Cycle,Base Deletion,23261,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,127,Cycle,Base Substitution,23491,35.57,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L002,127,Cycle,Base Insertion,23186,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,127,Cycle,Base Deletion,23186,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,128,Cycle,Base Substitution,23303,49.68,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L002,128,Cycle,Base Insertion,22984,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,128,Cycle,Base Deletion,22984,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,129,Cycle,Base Substitution,23335,45.19,28.00,29.73,-1.73,Before
REGRESSION.HCC1395_tumor.L002,129,Cycle,Base Insertion,23027,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,129,Cycle,Base Deletion,23027,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,13,Cycle,Base Substitution,27316,30.81,31.00,31.02,-0.02,Before
REGRESSION.HCC1395_tumor.L002,13,Cycle,Base Insertion,27316,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,13,Cycle,Base Deletion,27316,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,130,Cycle,Base Substitution,23322,45.99,28.00,29.94,-1.94,Before
REGRESSION.HCC1395_tumor.L002,130,Cycle,Base Insertion,23037,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,130,Cycle,Base Deletion,23037,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,131,Cycle,Base Substitution,23225,57.09,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L002,131,Cycle,Base Insertion,22919,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,131,Cycle,Base Deletion,22919,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,132,Cycle,Base Substitution,23094,55.02,28.00,29.84,-1.84,Before
REGRESSION.HCC1395_tumor.L002,132,Cycle,Base Insertion,22787,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,132,Cycle,Base Deletion,22787,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,133,Cycle,Base Substitution,23096,57.03,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L002,133,Cycle,Base Insertion,22771,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,133,Cycle,Base Deletion,22771,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,134,Cycle,Base Substitution,23091,44.18,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L002,134,Cycle,Base Insertion,22760,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,134,Cycle,Base Deletion,22760,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,135,Cycle,Base Substitution,22974,40.84,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L002,135,Cycle,Base Insertion,22637,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,135,Cycle,Base Deletion,22637,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,136,Cycle,Base Substitution,22873,42.57,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L002,136,Cycle,Base Insertion,22546,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,136,Cycle,Base Deletion,22546,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,137,Cycle,Base Substitution,22809,43.86,28.00,29.84,-1.84,Before
REGRESSION.HCC1395_tumor.L002,137,Cycle,Base Insertion,22462,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,137,Cycle,Base Deletion,22462,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,138,Cycle,Base Substitution,22751,54.01,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L002,138,Cycle,Base Insertion,22414,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,138,Cycle,Base Deletion,22414,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,139,Cycle,Base Substitution,22710,72.68,27.00,29.67,-2.67,Before
REGRESSION.HCC1395_tumor.L002,139,Cycle,Base Insertion,22348,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,139,Cycle,Base Deletion,22348,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,14,Cycle,Base Substitution,27292,33.35,30.00,31.16,-1.16,Before
REGRESSION.HCC1395_tumor.L002,14,Cycle,Base Insertion,27292,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,14,Cycle,Base Deletion,27292,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,140,Cycle,Base Substitution,22541,49.72,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L002,140,Cycle,Base Insertion,22202,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,140,Cycle,Base Deletion,22202,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,141,Cycle,Base Substitution,22413,46.22,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L002,141,Cycle,Base Insertion,22068,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,141,Cycle,Base Deletion,22068,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,142,Cycle,Base Substitution,22396,53.59,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L002,142,Cycle,Base Insertion,21993,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,142,Cycle,Base Deletion,21993,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,143,Cycle,Base Substitution,22277,44.69,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L002,143,Cycle,Base Insertion,21872,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,143,Cycle,Base Deletion,21872,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,144,Cycle,Base Substitution,22230,47.07,28.00,29.66,-1.66,Before
REGRESSION.HCC1395_tumor.L002,144,Cycle,Base Insertion,21811,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,144,Cycle,Base Deletion,21811,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,145,Cycle,Base Substitution,22102,35.92,29.00,29.79,-0.79,Before
REGRESSION.HCC1395_tumor.L002,145,Cycle,Base Insertion,21694,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,145,Cycle,Base Deletion,21694,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,146,Cycle,Base Substitution,21987,46.66,28.00,29.97,-1.97,Before
REGRESSION.HCC1395_tumor.L002,146,Cycle,Base Insertion,21626,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,146,Cycle,Base Deletion,21626,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,147,Cycle,Base Substitution,21970,53.21,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L002,148,Cycle,Base Substitution,21891,55.13,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L002,149,Cycle,Base Substitution,21805,46.23,28.00,29.84,-1.84,Before
REGRESSION.HCC1395_tumor.L002,15,Cycle,Base Substitution,27269,29.29,31.00,31.61,-0.61,Before
REGRESSION.HCC1395_tumor.L002,15,Cycle,Base Insertion,27269,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,15,Cycle,Base Deletion,27269,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,150,Cycle,Base Substitution,21610,45.45,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L002,16,Cycle,Base Substitution,27148,25.09,32.00,32.92,-0.92,Before
REGRESSION.HCC1395_tumor.L002,16,Cycle,Base Insertion,27148,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,16,Cycle,Base Deletion,27148,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,17,Cycle,Base Substitution,27244,32.08,31.00,32.34,-1.34,Before
REGRESSION.HCC1395_tumor.L002,17,Cycle,Base Insertion,27244,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,17,Cycle,Base Deletion,27244,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,18,Cycle,Base Substitution,27404,20.99,32.00,32.90,-0.90,Before
REGRESSION.HCC1395_tumor.L002,18,Cycle,Base Insertion,27404,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,18,Cycle,Base Deletion,27404,2.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,19,Cycle,Base Substitution,27123,20.75,33.00,33.02,-0.02,Before
REGRESSION.HCC1395_tumor.L002,19,Cycle,Base Insertion,27123,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,19,Cycle,Base Deletion,27123,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,2,Cycle,Base Substitution,27501,55.19,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L002,20,Cycle,Base Substitution,27145,29.04,31.00,32.66,-1.66,Before
REGRESSION.HCC1395_tumor.L002,20,Cycle,Base Insertion,27145,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,20,Cycle,Base Deletion,27145,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,21,Cycle,Base Substitution,27203,21.84,32.00,32.49,-0.49,Before
REGRESSION.HCC1395_tumor.L002,21,Cycle,Base Insertion,27203,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,21,Cycle,Base Deletion,27203,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,22,Cycle,Base Substitution,27179,23.46,32.00,33.24,-1.24,Before
REGRESSION.HCC1395_tumor.L002,22,Cycle,Base Insertion,27179,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,22,Cycle,Base Deletion,27179,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,23,Cycle,Base Substitution,27200,22.78,32.00,32.82,-0.82,Before
REGRESSION.HCC1395_tumor.L002,23,Cycle,Base Insertion,27200,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,23,Cycle,Base Deletion,27200,2.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,24,Cycle,Base Substitution,27144,23.58,32.00,33.19,-1.19,Before
REGRESSION.HCC1395_tumor.L002,24,Cycle,Base Insertion,27144,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,24,Cycle,Base Deletion,27144,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,25,Cycle,Base Substitution,27138,26.45,32.00,32.91,-0.91,Before
REGRESSION.HCC1395_tumor.L002,25,Cycle,Base Insertion,27138,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,25,Cycle,Base Deletion,27138,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,26,Cycle,Base Substitution,27235,29.71,31.00,31.48,-0.48,Before
REGRESSION.HCC1395_tumor.L002,26,Cycle,Base Insertion,27235,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,26,Cycle,Base Deletion,27235,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,27,Cycle,Base Substitution,27172,31.62,30.00,31.50,-1.50,Before
REGRESSION.HCC1395_tumor.L002,27,Cycle,Base Insertion,27172,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,27,Cycle,Base Deletion,27172,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,28,Cycle,Base Substitution,27164,32.48,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L002,28,Cycle,Base Insertion,27164,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,28,Cycle,Base Deletion,27164,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,29,Cycle,Base Substitution,27112,27.94,31.00,31.23,-0.23,Before
REGRESSION.HCC1395_tumor.L002,29,Cycle,Base Insertion,27111,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,29,Cycle,Base Deletion,27111,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,3,Cycle,Base Substitution,27662,61.55,29.00,30.70,-1.70,Before
REGRESSION.HCC1395_tumor.L002,30,Cycle,Base Substitution,27142,30.40,31.00,31.55,-0.55,Before
REGRESSION.HCC1395_tumor.L002,30,Cycle,Base Insertion,27140,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,30,Cycle,Base Deletion,27140,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,31,Cycle,Base Substitution,27138,33.28,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L002,31,Cycle,Base Insertion,27137,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,31,Cycle,Base Deletion,27137,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,32,Cycle,Base Substitution,27177,38.67,30.00,31.54,-1.54,Before
REGRESSION.HCC1395_tumor.L002,32,Cycle,Base Insertion,27176,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,32,Cycle,Base Deletion,27176,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,33,Cycle,Base Substitution,27156,34.03,30.00,31.56,-1.56,Before
REGRESSION.HCC1395_tumor.L002,33,Cycle,Base Insertion,27154,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,33,Cycle,Base Deletion,27154,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,34,Cycle,Base Substitution,27117,38.61,30.00,31.53,-1.53,Before
REGRESSION.HCC1395_tumor.L002,34,Cycle,Base Insertion,27115,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,34,Cycle,Base Deletion,27115,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,35,Cycle,Base Substitution,27131,35.82,30.00,31.26,-1.26,Before
REGRESSION.HCC1395_tumor.L002,35,Cycle,Base Insertion,27129,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,35,Cycle,Base Deletion,27129,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,36,Cycle,Base Substitution,27003,49.59,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L002,36,Cycle,Base Insertion,27000,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,36,Cycle,Base Deletion,27000,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,37,Cycle,Base Substitution,27130,29.76,31.00,31.88,-0.88,Before
REGRESSION.HCC1395_tumor.L002,37,Cycle,Base Insertion,27128,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,37,Cycle,Base Deletion,27128,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,38,Cycle,Base Substitution,27069,25.94,31.00,31.57,-0.57,Before
REGRESSION.HCC1395_tumor.L002,38,Cycle,Base Insertion,27067,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,38,Cycle,Base Deletion,27067,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,39,Cycle,Base Substitution,27043,36.43,30.00,31.50,-1.50,Before
REGRESSION.HCC1395_tumor.L002,39,Cycle,Base Insertion,27041,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,39,Cycle,Base Deletion,27041,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,4,Cycle,Base Substitution,27440,57.56,29.00,30.93,-1.93,Before
REGRESSION.HCC1395_tumor.L002,40,Cycle,Base Substitution,27175,32.24,30.00,31.75,-1.75,Before
REGRESSION.HCC1395_tumor.L002,40,Cycle,Base Insertion,27172,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,40,Cycle,Base Deletion,27172,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,41,Cycle,Base Substitution,26992,38.99,30.00,31.57,-1.57,Before
REGRESSION.HCC1395_tumor.L002,41,Cycle,Base Insertion,26990,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,41,Cycle,Base Deletion,26990,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,42,Cycle,Base Substitution,27015,27.29,31.00,31.44,-0.44,Before
REGRESSION.HCC1395_tumor.L002,42,Cycle,Base Insertion,27014,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,42,Cycle,Base Deletion,27014,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,43,Cycle,Base Substitution,26881,33.91,30.00,31.49,-1.49,Before
REGRESSION.HCC1395_tumor.L002,43,Cycle,Base Insertion,26878,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,43,Cycle,Base Deletion,26878,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,44,Cycle,Base Substitution,27077,28.43,31.00,31.85,-0.85,Before
REGRESSION.HCC1395_tumor.L002,44,Cycle,Base Insertion,27073,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,44,Cycle,Base Deletion,27073,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,45,Cycle,Base Substitution,27017,33.75,30.00,31.33,-1.33,Before
REGRESSION.HCC1395_tumor.L002,45,Cycle,Base Insertion,27011,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,45,Cycle,Base Deletion,27011,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,46,Cycle,Base Substitution,27106,31.00,31.00,31.18,-0.18,Before
REGRESSION.HCC1395_tumor.L002,46,Cycle,Base Insertion,27099,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,46,Cycle,Base Deletion,27099,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,47,Cycle,Base Substitution,27014,42.04,30.00,31.39,-1.39,Before
REGRESSION.HCC1395_tumor.L002,47,Cycle,Base Insertion,27008,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,47,Cycle,Base Deletion,27008,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,48,Cycle,Base Substitution,26855,26.82,31.00,31.34,-0.34,Before
REGRESSION.HCC1395_tumor.L002,48,Cycle,Base Insertion,26845,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,48,Cycle,Base Deletion,26845,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,49,Cycle,Base Substitution,26876,28.60,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L002,49,Cycle,Base Insertion,26862,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,49,Cycle,Base Deletion,26862,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,5,Cycle,Base Substitution,27554,48.03,30.00,31.26,-1.26,Before
REGRESSION.HCC1395_tumor.L002,5,Cycle,Base Insertion,27554,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,5,Cycle,Base Deletion,27554,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,50,Cycle,Base Substitution,26926,34.72,30.00,31.79,-1.79,Before
REGRESSION.HCC1395_tumor.L002,50,Cycle,Base Insertion,26909,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,50,Cycle,Base Deletion,26909,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,51,Cycle,Base Substitution,26912,33.77,30.00,31.15,-1.15,Before
REGRESSION.HCC1395_tumor.L002,51,Cycle,Base Insertion,26888,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,51,Cycle,Base Deletion,26888,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,52,Cycle,Base Substitution,26863,32.74,30.00,31.57,-1.57,Before
REGRESSION.HCC1395_tumor.L002,52,Cycle,Base Insertion,26838,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,52,Cycle,Base Deletion,26838,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,53,Cycle,Base Substitution,26968,36.92,30.00,31.58,-1.58,Before
REGRESSION.HCC1395_tumor.L002,53,Cycle,Base Insertion,26937,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,53,Cycle,Base Deletion,26937,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,54,Cycle,Base Substitution,26983,39.23,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L002,54,Cycle,Base Insertion,26957,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,54,Cycle,Base Deletion,26957,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,55,Cycle,Base Substitution,26833,27.95,31.00,31.13,-0.13,Before
REGRESSION.HCC1395_tumor.L002,55,Cycle,Base Insertion,26802,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,55,Cycle,Base Deletion,26802,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,56,Cycle,Base Substitution,26744,38.84,30.00,31.42,-1.42,Before
REGRESSION.HCC1395_tumor.L002,56,Cycle,Base Insertion,26712,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,56,Cycle,Base Deletion,26712,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,57,Cycle,Base Substitution,26704,45.01,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L002,57,Cycle,Base Insertion,26662,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,57,Cycle,Base Deletion,26662,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,58,Cycle,Base Substitution,26829,30.17,31.00,31.21,-0.21,Before
REGRESSION.HCC1395_tumor.L002,58,Cycle,Base Insertion,26770,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,58,Cycle,Base Deletion,26770,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,59,Cycle,Base Substitution,26757,28.95,31.00,31.34,-0.34,Before
REGRESSION.HCC1395_tumor.L002,59,Cycle,Base Insertion,26699,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,59,Cycle,Base Deletion,26699,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,6,Cycle,Base Substitution,27443,30.62,31.00,31.18,-0.18,Before
REGRESSION.HCC1395_tumor.L002,6,Cycle,Base Insertion,27443,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,6,Cycle,Base Deletion,27443,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,60,Cycle,Base Substitution,26788,25.97,31.00,31.33,-0.33,Before
REGRESSION.HCC1395_tumor.L002,60,Cycle,Base Insertion,26724,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,60,Cycle,Base Deletion,26724,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,61,Cycle,Base Substitution,26741,29.12,31.00,31.50,-0.50,Before
REGRESSION.HCC1395_tumor.L002,61,Cycle,Base Insertion,26674,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,61,Cycle,Base Deletion,26674,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,62,Cycle,Base Substitution,26709,27.92,31.00,31.45,-0.45,Before
REGRESSION.HCC1395_tumor.L002,62,Cycle,Base Insertion,26639,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,62,Cycle,Base Deletion,26639,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,63,Cycle,Base Substitution,26719,45.59,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L002,63,Cycle,Base Insertion,26655,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,63,Cycle,Base Deletion,26655,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,64,Cycle,Base Substitution,26749,38.16,30.00,31.15,-1.15,Before
REGRESSION.HCC1395_tumor.L002,64,Cycle,Base Insertion,26680,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,64,Cycle,Base Deletion,26680,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,65,Cycle,Base Substitution,26673,34.13,30.00,31.48,-1.48,Before
REGRESSION.HCC1395_tumor.L002,65,Cycle,Base Insertion,26587,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,65,Cycle,Base Deletion,26587,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,66,Cycle,Base Substitution,26713,31.79,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L002,66,Cycle,Base Insertion,26634,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,66,Cycle,Base Deletion,26634,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,67,Cycle,Base Substitution,26662,44.52,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L002,67,Cycle,Base Insertion,26578,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,67,Cycle,Base Deletion,26578,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,68,Cycle,Base Substitution,26548,42.67,30.00,31.04,-1.04,Before
REGRESSION.HCC1395_tumor.L002,68,Cycle,Base Insertion,26457,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,68,Cycle,Base Deletion,26457,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,69,Cycle,Base Substitution,26542,28.94,31.00,31.25,-0.25,Before
REGRESSION.HCC1395_tumor.L002,69,Cycle,Base Insertion,26448,2.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,69,Cycle,Base Deletion,26448,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,7,Cycle,Base Substitution,27401,37.46,30.00,30.87,-0.87,Before
REGRESSION.HCC1395_tumor.L002,7,Cycle,Base Insertion,27401,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,7,Cycle,Base Deletion,27401,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,70,Cycle,Base Substitution,26595,42.42,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L002,70,Cycle,Base Insertion,26499,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,70,Cycle,Base Deletion,26499,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,71,Cycle,Base Substitution,26545,40.75,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L002,71,Cycle,Base Insertion,26438,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,71,Cycle,Base Deletion,26438,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,72,Cycle,Base Substitution,26533,37.10,30.00,31.01,-1.01,Before
REGRESSION.HCC1395_tumor.L002,72,Cycle,Base Insertion,26414,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,72,Cycle,Base Deletion,26414,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,73,Cycle,Base Substitution,26521,44.44,29.00,30.88,-1.88,Before
REGRESSION.HCC1395_tumor.L002,73,Cycle,Base Insertion,26404,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,73,Cycle,Base Deletion,26404,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,74,Cycle,Base Substitution,26443,44.71,29.00,30.87,-1.87,Before
REGRESSION.HCC1395_tumor.L002,74,Cycle,Base Insertion,26320,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,74,Cycle,Base Deletion,26320,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,75,Cycle,Base Substitution,26498,30.60,31.00,31.19,-0.19,Before
REGRESSION.HCC1395_tumor.L002,75,Cycle,Base Insertion,26360,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,75,Cycle,Base Deletion,26360,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,76,Cycle,Base Substitution,26353,30.99,31.00,31.09,-0.09,Before
REGRESSION.HCC1395_tumor.L002,76,Cycle,Base Insertion,26229,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,76,Cycle,Base Deletion,26229,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,77,Cycle,Base Substitution,26250,50.13,29.00,30.96,-1.96,Before
REGRESSION.HCC1395_tumor.L002,77,Cycle,Base Insertion,26119,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,77,Cycle,Base Deletion,26119,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,78,Cycle,Base Substitution,26222,38.94,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L002,78,Cycle,Base Insertion,26073,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,78,Cycle,Base Deletion,26073,1.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,79,Cycle,Base Substitution,26217,41.96,29.00,30.94,-1.94,Before
REGRESSION.HCC1395_tumor.L002,79,Cycle,Base Insertion,26065,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,79,Cycle,Base Deletion,26065,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,8,Cycle,Base Substitution,27414,23.81,31.00,31.32,-0.32,Before
REGRESSION.HCC1395_tumor.L002,8,Cycle,Base Insertion,27414,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,8,Cycle,Base Deletion,27414,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,80,Cycle,Base Substitution,26133,42.28,29.00,30.89,-1.89,Before
REGRESSION.HCC1395_tumor.L002,80,Cycle,Base Insertion,25964,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,80,Cycle,Base Deletion,25964,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,81,Cycle,Base Substitution,26153,38.32,30.00,31.00,-1.00,Before
REGRESSION.HCC1395_tumor.L002,81,Cycle,Base Insertion,25970,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,81,Cycle,Base Deletion,25970,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,82,Cycle,Base Substitution,26084,41.81,29.00,30.87,-1.87,Before
REGRESSION.HCC1395_tumor.L002,82,Cycle,Base Insertion,25919,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,82,Cycle,Base Deletion,25919,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,83,Cycle,Base Substitution,26011,34.80,30.00,30.83,-0.83,Before
REGRESSION.HCC1395_tumor.L002,83,Cycle,Base Insertion,25841,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,83,Cycle,Base Deletion,25841,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,84,Cycle,Base Substitution,26063,39.30,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L002,84,Cycle,Base Insertion,25905,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,84,Cycle,Base Deletion,25905,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,85,Cycle,Base Substitution,25968,40.84,29.00,30.90,-1.90,Before
REGRESSION.HCC1395_tumor.L002,85,Cycle,Base Insertion,25788,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,85,Cycle,Base Deletion,25788,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,86,Cycle,Base Substitution,25937,47.22,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L002,86,Cycle,Base Insertion,25758,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,86,Cycle,Base Deletion,25758,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,87,Cycle,Base Substitution,26008,41.81,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L002,87,Cycle,Base Insertion,25815,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,87,Cycle,Base Deletion,25815,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,88,Cycle,Base Substitution,25852,27.95,30.00,30.75,-0.75,Before
REGRESSION.HCC1395_tumor.L002,88,Cycle,Base Insertion,25642,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,88,Cycle,Base Deletion,25642,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,89,Cycle,Base Substitution,25761,36.39,30.00,30.68,-0.68,Before
REGRESSION.HCC1395_tumor.L002,89,Cycle,Base Insertion,25550,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,89,Cycle,Base Deletion,25550,1.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,9,Cycle,Base Substitution,27283,29.66,31.00,31.15,-0.15,Before
REGRESSION.HCC1395_tumor.L002,9,Cycle,Base Insertion,27283,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,9,Cycle,Base Deletion,27283,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,90,Cycle,Base Substitution,25730,37.47,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L002,90,Cycle,Base Insertion,25516,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,90,Cycle,Base Deletion,25516,2.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,91,Cycle,Base Substitution,25586,45.88,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L002,91,Cycle,Base Insertion,25382,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,91,Cycle,Base Deletion,25382,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,92,Cycle,Base Substitution,25615,42.54,29.00,30.75,-1.75,Before
REGRESSION.HCC1395_tumor.L002,92,Cycle,Base Insertion,25412,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,92,Cycle,Base Deletion,25412,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,93,Cycle,Base Substitution,25617,42.99,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L002,93,Cycle,Base Insertion,25396,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,93,Cycle,Base Deletion,25396,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,94,Cycle,Base Substitution,25528,49.82,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L002,94,Cycle,Base Insertion,25303,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,94,Cycle,Base Deletion,25303,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,95,Cycle,Base Substitution,25508,34.22,30.00,30.64,-0.64,Before
REGRESSION.HCC1395_tumor.L002,95,Cycle,Base Insertion,25292,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,95,Cycle,Base Deletion,25292,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,96,Cycle,Base Substitution,25455,39.82,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L002,96,Cycle,Base Insertion,25216,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,96,Cycle,Base Deletion,25216,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,97,Cycle,Base Substitution,25367,37.56,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L002,97,Cycle,Base Insertion,25143,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,97,Cycle,Base Deletion,25143,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,98,Cycle,Base Substitution,25261,34.65,30.00,31.09,-1.09,Before
REGRESSION.HCC1395_tumor.L002,98,Cycle,Base Insertion,25016,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,98,Cycle,Base Deletion,25016,2.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,99,Cycle,Base Substitution,25187,37.91,29.00,30.94,-1.94,Before
REGRESSION.HCC1395_tumor.L002,99,Cycle,Base Insertion,24940,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,99,Cycle,Base Deletion,24940,2.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,12,QualityScore,Base Substitution,83548,8177.83,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L002,24,QualityScore,Base Substitution,201811,784.66,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L002,40,QualityScore,Base Substitution,7411222,5563.74,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L002,45,QualityScore,Base Insertion,7696581,157.44,46.00,45.00,1.00,Before
REGRESSION.HCC1395_tumor.L002,45,QualityScore,Base Deletion,7696581,355.01,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L003,AA,Context,Base Substitution,521547,1382.23,26.00,29.62,-3.62,Before
REGRESSION.HCC1395_tumor.L003,AAA,Context,Base Insertion,176233,22.61,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L003,AAA,Context,Base Deletion,176233,67.49,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L003,AAC,Context,Base Insertion,85139,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AAC,Context,Base Deletion,85139,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AAG,Context,Base Insertion,134802,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AAG,Context,Base Deletion,134802,4.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AAT,Context,Base Insertion,100040,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AAT,Context,Base Deletion,100040,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AC,Context,Base Substitution,358352,1112.34,25.00,28.73,-3.73,Before
REGRESSION.HCC1395_tumor.L003,ACA,Context,Base Insertion,132610,2.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ACA,Context,Base Deletion,132610,6.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ACC,Context,Base Insertion,105168,3.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ACC,Context,Base Deletion,105168,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ACG,Context,Base Insertion,20951,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ACG,Context,Base Deletion,20951,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ACT,Context,Base Insertion,105167,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ACT,Context,Base Deletion,105167,4.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AG,Context,Base Substitution,563565,554.52,30.00,31.76,-1.76,Before
REGRESSION.HCC1395_tumor.L003,AGA,Context,Base Insertion,152018,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AGA,Context,Base Deletion,152018,5.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AGC,Context,Base Insertion,140858,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AGC,Context,Base Deletion,140858,3.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AGG,Context,Base Insertion,164535,7.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AGG,Context,Base Deletion,164535,4.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AGT,Context,Base Insertion,102666,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AGT,Context,Base Deletion,102666,3.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,AT,Context,Base Substitution,368868,489.04,29.00,32.05,-3.05,Before
REGRESSION.HCC1395_tumor.L003,ATA,Context,Base Insertion,74544,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ATA,Context,Base Deletion,74544,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ATC,Context,Base Insertion,79378,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ATC,Context,Base Deletion,79378,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ATG,Context,Base Insertion,114698,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ATG,Context,Base Deletion,114698,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ATT,Context,Base Insertion,107694,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,ATT,Context,Base Deletion,107694,2.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CA,Context,Base Substitution,595069,1295.32,27.00,29.94,-2.94,Before
REGRESSION.HCC1395_tumor.L003,CAA,Context,Base Insertion,111925,3.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CAA,Context,Base Deletion,111925,3.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CAC,Context,Base Insertion,125987,4.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CAC,Context,Base Deletion,125987,7.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CAG,Context,Base Insertion,214053,5.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CAG,Context,Base Deletion,214053,10.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CAT,Context,Base Insertion,111810,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CAT,Context,Base Deletion,111810,2.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CC,Context,Base Substitution,555975,1765.44,25.00,28.86,-3.86,Before
REGRESSION.HCC1395_tumor.L003,CCA,Context,Base Insertion,177031,4.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CCA,Context,Base Deletion,177031,2.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CCC,Context,Base Insertion,153144,5.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CCC,Context,Base Deletion,153144,8.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CCG,Context,Base Insertion,38097,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CCG,Context,Base Deletion,38097,2.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CCT,Context,Base Insertion,179027,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CCT,Context,Base Deletion,179027,6.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CG,Context,Base Substitution,115365,359.08,26.00,29.58,-3.58,Before
REGRESSION.HCC1395_tumor.L003,CGA,Context,Base Insertion,44819,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CGA,Context,Base Deletion,44819,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CGC,Context,Base Insertion,64055,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CGC,Context,Base Deletion,64055,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CGG,Context,Base Insertion,78545,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CGG,Context,Base Deletion,78545,4.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CGT,Context,Base Insertion,49264,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CGT,Context,Base Deletion,49264,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CT,Context,Base Substitution,599878,421.63,32.00,32.45,-0.45,Before
REGRESSION.HCC1395_tumor.L003,CTA,Context,Base Insertion,58893,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CTA,Context,Base Deletion,58893,3.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CTC,Context,Base Insertion,147129,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CTC,Context,Base Deletion,147129,8.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CTG,Context,Base Insertion,214565,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CTG,Context,Base Deletion,214565,6.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CTT,Context,Base Insertion,147109,4.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,CTT,Context,Base Deletion,147109,4.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GA,Context,Base Substitution,496231,857.51,28.00,29.66,-1.66,Before
REGRESSION.HCC1395_tumor.L003,GAA,Context,Base Insertion,141392,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GAA,Context,Base Deletion,141392,2.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GAC,Context,Base Insertion,84300,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GAC,Context,Base Deletion,84300,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GAG,Context,Base Insertion,149945,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GAG,Context,Base Deletion,149945,3.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GAT,Context,Base Insertion,83871,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GAT,Context,Base Deletion,83871,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GC,Context,Base Substitution,491226,1099.33,27.00,30.15,-3.15,Before
REGRESSION.HCC1395_tumor.L003,GCA,Context,Base Insertion,148454,2.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GCA,Context,Base Deletion,148454,4.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GCC,Context,Base Insertion,147763,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GCC,Context,Base Deletion,147763,5.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GCG,Context,Base Insertion,36547,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GCG,Context,Base Deletion,36547,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GCT,Context,Base Insertion,156845,3.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GCT,Context,Base Deletion,156845,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GG,Context,Base Substitution,580746,818.42,29.00,31.63,-2.63,Before
REGRESSION.HCC1395_tumor.L003,GGA,Context,Base Insertion,156828,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GGA,Context,Base Deletion,156828,6.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GGC,Context,Base Insertion,146494,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GGC,Context,Base Deletion,146494,6.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GGG,Context,Base Insertion,159350,4.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GGG,Context,Base Deletion,159350,12.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GGT,Context,Base Insertion,115726,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GGT,Context,Base Deletion,115726,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GT,Context,Base Substitution,409394,754.22,28.00,32.01,-4.01,Before
REGRESSION.HCC1395_tumor.L003,GTA,Context,Base Insertion,66845,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GTA,Context,Base Deletion,66845,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GTC,Context,Base Insertion,91522,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GTC,Context,Base Deletion,91522,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GTG,Context,Base Insertion,140353,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GTG,Context,Base Deletion,140353,7.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GTT,Context,Base Insertion,99742,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,GTT,Context,Base Deletion,99742,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TA,Context,Base Substitution,289155,813.83,26.00,29.77,-3.77,Before
REGRESSION.HCC1395_tumor.L003,TAA,Context,Base Insertion,87445,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TAA,Context,Base Deletion,87445,3.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TAC,Context,Base Insertion,60605,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TAC,Context,Base Deletion,60605,3.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TAG,Context,Base Insertion,60429,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TAG,Context,Base Deletion,60429,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TAT,Context,Base Insertion,70368,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TAT,Context,Base Deletion,70368,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TC,Context,Base Substitution,450911,1080.67,26.00,30.45,-4.45,Before
REGRESSION.HCC1395_tumor.L003,TCA,Context,Base Insertion,132310,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TCA,Context,Base Deletion,132310,5.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TCC,Context,Base Insertion,146096,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TCC,Context,Base Deletion,146096,5.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TCG,Context,Base Insertion,18855,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TCG,Context,Base Deletion,18855,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TCT,Context,Base Insertion,154721,2.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TCT,Context,Base Deletion,154721,5.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TG,Context,Base Substitution,588168,477.14,31.00,31.83,-0.83,Before
REGRESSION.HCC1395_tumor.L003,TGA,Context,Base Insertion,138719,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TGA,Context,Base Deletion,138719,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TGC,Context,Base Insertion,136626,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TGC,Context,Base Deletion,136626,2.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TGG,Context,Base Insertion,174129,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TGG,Context,Base Deletion,174129,3.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TGT,Context,Base Insertion,138994,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TGT,Context,Base Deletion,138994,6.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TT,Context,Base Substitution,538355,704.42,29.00,32.80,-3.80,Before
REGRESSION.HCC1395_tumor.L003,TTA,Context,Base Insertion,86667,2.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TTA,Context,Base Deletion,86667,3.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TTC,Context,Base Insertion,130145,2.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TTC,Context,Base Deletion,130145,7.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TTG,Context,Base Insertion,114357,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TTG,Context,Base Deletion,114357,2.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,TTT,Context,Base Insertion,180123,26.91,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L003,TTT,Context,Base Deletion,180123,47.88,43.00,45.00,-2.00,Before
REGRESSION.HCC1395_tumor.L003,-1,Cycle,Base Substitution,26669,78.81,25.00,25.88,-0.88,Before
REGRESSION.HCC1395_tumor.L003,-10,Cycle,Base Substitution,26883,34.40,30.00,31.52,-1.52,Before
REGRESSION.HCC1395_tumor.L003,-10,Cycle,Base Insertion,26883,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-10,Cycle,Base Deletion,26883,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-100,Cycle,Base Substitution,24855,56.20,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L003,-100,Cycle,Base Insertion,24615,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-100,Cycle,Base Deletion,24615,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-101,Cycle,Base Substitution,24836,53.72,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L003,-101,Cycle,Base Insertion,24585,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-101,Cycle,Base Deletion,24585,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-102,Cycle,Base Substitution,24700,52.65,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L003,-102,Cycle,Base Insertion,24456,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-102,Cycle,Base Deletion,24456,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-103,Cycle,Base Substitution,24705,40.94,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L003,-103,Cycle,Base Insertion,24454,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-103,Cycle,Base Deletion,24454,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-104,Cycle,Base Substitution,24613,45.65,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L003,-104,Cycle,Base Insertion,24372,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-104,Cycle,Base Deletion,24372,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-105,Cycle,Base Substitution,24536,54.95,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L003,-105,Cycle,Base Insertion,24280,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-105,Cycle,Base Deletion,24280,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-106,Cycle,Base Substitution,24457,51.56,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L003,-106,Cycle,Base Insertion,24211,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-106,Cycle,Base Deletion,24211,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-107,Cycle,Base Substitution,24448,49.21,28.00,29.72,-1.72,Before
REGRESSION.HCC1395_tumor.L003,-107,Cycle,Base Insertion,24198,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-107,Cycle,Base Deletion,24198,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-108,Cycle,Base Substitution,24413,48.35,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L003,-108,Cycle,Base Insertion,24146,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-108,Cycle,Base Deletion,24146,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-109,Cycle,Base Substitution,24386,57.07,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L003,-109,Cycle,Base Insertion,24113,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-109,Cycle,Base Deletion,24113,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-11,Cycle,Base Substitution,26961,28.26,31.00,31.86,-0.86,Before
REGRESSION.HCC1395_tumor.L003,-11,Cycle,Base Insertion,26961,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-11,Cycle,Base Deletion,26961,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-110,Cycle,Base Substitution,24314,58.60,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L003,-110,Cycle,Base Insertion,24043,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-110,Cycle,Base Deletion,24043,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-111,Cycle,Base Substitution,24197,55.40,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L003,-111,Cycle,Base Insertion,23921,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-111,Cycle,Base Deletion,23921,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-112,Cycle,Base Substitution,24146,51.59,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L003,-112,Cycle,Base Insertion,23873,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-112,Cycle,Base Deletion,23873,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-113,Cycle,Base Substitution,24124,52.09,28.00,29.84,-1.84,Before
REGRESSION.HCC1395_tumor.L003,-113,Cycle,Base Insertion,23855,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-113,Cycle,Base Deletion,23855,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-114,Cycle,Base Substitution,24034,51.48,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L003,-114,Cycle,Base Insertion,23773,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-114,Cycle,Base Deletion,23773,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-115,Cycle,Base Substitution,23880,50.84,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L003,-115,Cycle,Base Insertion,23606,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-115,Cycle,Base Deletion,23606,2.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-116,Cycle,Base Substitution,23960,62.81,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L003,-116,Cycle,Base Insertion,23698,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-116,Cycle,Base Deletion,23698,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-117,Cycle,Base Substitution,23745,55.69,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L003,-117,Cycle,Base Insertion,23468,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-117,Cycle,Base Deletion,23468,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-118,Cycle,Base Substitution,23630,42.78,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L003,-118,Cycle,Base Insertion,23341,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-118,Cycle,Base Deletion,23341,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-119,Cycle,Base Substitution,23653,47.61,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L003,-119,Cycle,Base Insertion,23373,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-119,Cycle,Base Deletion,23373,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-12,Cycle,Base Substitution,26993,43.78,30.00,31.63,-1.63,Before
REGRESSION.HCC1395_tumor.L003,-12,Cycle,Base Insertion,26993,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-12,Cycle,Base Deletion,26993,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-120,Cycle,Base Substitution,23640,51.04,28.00,29.82,-1.82,Before
REGRESSION.HCC1395_tumor.L003,-120,Cycle,Base Insertion,23365,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-120,Cycle,Base Deletion,23365,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-121,Cycle,Base Substitution,23631,49.58,28.00,29.67,-1.67,Before
REGRESSION.HCC1395_tumor.L003,-121,Cycle,Base Insertion,23335,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-121,Cycle,Base Deletion,23335,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-122,Cycle,Base Substitution,23517,57.70,28.00,29.79,-1.79,Before
REGRESSION.HCC1395_tumor.L003,-122,Cycle,Base Insertion,23232,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-122,Cycle,Base Deletion,23232,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-123,Cycle,Base Substitution,23357,36.42,29.00,29.61,-0.61,Before
REGRESSION.HCC1395_tumor.L003,-123,Cycle,Base Insertion,23057,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-123,Cycle,Base Deletion,23057,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-124,Cycle,Base Substitution,23258,55.39,28.00,29.48,-1.48,Before
REGRESSION.HCC1395_tumor.L003,-124,Cycle,Base Insertion,22949,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-124,Cycle,Base Deletion,22949,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-125,Cycle,Base Substitution,23352,45.07,28.00,29.52,-1.52,Before
REGRESSION.HCC1395_tumor.L003,-125,Cycle,Base Insertion,23029,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-125,Cycle,Base Deletion,23029,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-126,Cycle,Base Substitution,23295,50.09,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L003,-126,Cycle,Base Insertion,22968,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-126,Cycle,Base Deletion,22968,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-127,Cycle,Base Substitution,23245,37.42,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L003,-127,Cycle,Base Insertion,22921,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-127,Cycle,Base Deletion,22921,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-128,Cycle,Base Substitution,23133,54.04,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L003,-128,Cycle,Base Insertion,22825,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-128,Cycle,Base Deletion,22825,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-129,Cycle,Base Substitution,23059,47.51,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L003,-129,Cycle,Base Insertion,22743,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-129,Cycle,Base Deletion,22743,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-13,Cycle,Base Substitution,26981,36.75,30.00,31.89,-1.89,Before
REGRESSION.HCC1395_tumor.L003,-13,Cycle,Base Insertion,26981,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-13,Cycle,Base Deletion,26981,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-130,Cycle,Base Substitution,23050,42.01,28.00,29.71,-1.71,Before
REGRESSION.HCC1395_tumor.L003,-130,Cycle,Base Insertion,22740,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-130,Cycle,Base Deletion,22740,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-131,Cycle,Base Substitution,22910,42.22,28.00,29.32,-1.32,Before
REGRESSION.HCC1395_tumor.L003,-131,Cycle,Base Insertion,22604,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-131,Cycle,Base Deletion,22604,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-132,Cycle,Base Substitution,22939,38.06,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L003,-132,Cycle,Base Insertion,22606,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-132,Cycle,Base Deletion,22606,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-133,Cycle,Base Substitution,22810,52.81,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L003,-133,Cycle,Base Insertion,22463,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-133,Cycle,Base Deletion,22463,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-134,Cycle,Base Substitution,22679,37.44,29.00,30.00,-1.00,Before
REGRESSION.HCC1395_tumor.L003,-134,Cycle,Base Insertion,22336,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-134,Cycle,Base Deletion,22336,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-135,Cycle,Base Substitution,22685,57.16,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L003,-135,Cycle,Base Insertion,22352,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-135,Cycle,Base Deletion,22352,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-136,Cycle,Base Substitution,22626,52.39,28.00,29.59,-1.59,Before
REGRESSION.HCC1395_tumor.L003,-136,Cycle,Base Insertion,22259,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-136,Cycle,Base Deletion,22259,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-137,Cycle,Base Substitution,22553,52.89,28.00,29.68,-1.68,Before
REGRESSION.HCC1395_tumor.L003,-137,Cycle,Base Insertion,22183,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-137,Cycle,Base Deletion,22183,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-138,Cycle,Base Substitution,22465,52.01,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L003,-138,Cycle,Base Insertion,22088,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-138,Cycle,Base Deletion,22088,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-139,Cycle,Base Substitution,22285,42.58,28.00,29.94,-1.94,Before
REGRESSION.HCC1395_tumor.L003,-139,Cycle,Base Insertion,21894,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-139,Cycle,Base Deletion,21894,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-14,Cycle,Base Substitution,26952,32.04,30.00,31.84,-1.84,Before
REGRESSION.HCC1395_tumor.L003,-14,Cycle,Base Insertion,26952,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-14,Cycle,Base Deletion,26952,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-140,Cycle,Base Substitution,22178,41.85,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L003,-140,Cycle,Base Insertion,21802,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-140,Cycle,Base Deletion,21802,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-141,Cycle,Base Substitution,22125,36.65,29.00,29.98,-0.98,Before
REGRESSION.HCC1395_tumor.L003,-141,Cycle,Base Insertion,21721,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-141,Cycle,Base Deletion,21721,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-142,Cycle,Base Substitution,22112,33.78,29.00,29.83,-0.83,Before
REGRESSION.HCC1395_tumor.L003,-142,Cycle,Base Insertion,21677,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-142,Cycle,Base Deletion,21677,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-143,Cycle,Base Substitution,22073,34.57,29.00,29.87,-0.87,Before
REGRESSION.HCC1395_tumor.L003,-143,Cycle,Base Insertion,21622,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-143,Cycle,Base Deletion,21622,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-144,Cycle,Base Substitution,21811,36.24,29.00,29.96,-0.96,Before
REGRESSION.HCC1395_tumor.L003,-144,Cycle,Base Insertion,21323,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-144,Cycle,Base Deletion,21323,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-145,Cycle,Base Substitution,21699,40.95,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L003,-145,Cycle,Base Insertion,16676,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-145,Cycle,Base Deletion,16676,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-146,Cycle,Base Substitution,21601,74.38,27.00,29.87,-2.87,Before
REGRESSION.HCC1395_tumor.L003,-146,Cycle,Base Insertion,16623,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-146,Cycle,Base Deletion,16623,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-147,Cycle,Base Substitution,21500,232.58,23.00,30.19,-7.19,Before
REGRESSION.HCC1395_tumor.L003,-148,Cycle,Base Substitution,21353,880.94,15.00,29.92,-14.92,Before
REGRESSION.HCC1395_tumor.L003,-149,Cycle,Base Substitution,13230,810.04,14.00,30.84,-16.84,Before
REGRESSION.HCC1395_tumor.L003,-15,Cycle,Base Substitution,27071,35.14,30.00,31.72,-1.72,Before
REGRESSION.HCC1395_tumor.L003,-15,Cycle,Base Insertion,27071,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-15,Cycle,Base Deletion,27071,2.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-150,Cycle,Base Substitution,4625,8.75,30.00,30.14,-0.14,Before
REGRESSION.HCC1395_tumor.L003,-16,Cycle,Base Substitution,26983,42.75,30.00,31.52,-1.52,Before
REGRESSION.HCC1395_tumor.L003,-16,Cycle,Base Insertion,26983,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-16,Cycle,Base Deletion,26983,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-17,Cycle,Base Substitution,27067,41.21,30.00,31.76,-1.76,Before
REGRESSION.HCC1395_tumor.L003,-17,Cycle,Base Insertion,27067,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-17,Cycle,Base Deletion,27067,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-18,Cycle,Base Substitution,26944,44.44,30.00,31.57,-1.57,Before
REGRESSION.HCC1395_tumor.L003,-18,Cycle,Base Insertion,26944,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-18,Cycle,Base Deletion,26944,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-19,Cycle,Base Substitution,26914,43.15,30.00,31.36,-1.36,Before
REGRESSION.HCC1395_tumor.L003,-19,Cycle,Base Insertion,26914,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-19,Cycle,Base Deletion,26914,2.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-2,Cycle,Base Substitution,27166,71.07,27.00,28.49,-1.49,Before
REGRESSION.HCC1395_tumor.L003,-20,Cycle,Base Substitution,26963,31.90,30.00,31.74,-1.74,Before
REGRESSION.HCC1395_tumor.L003,-20,Cycle,Base Insertion,26963,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-20,Cycle,Base Deletion,26963,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-21,Cycle,Base Substitution,26918,23.79,32.00,32.08,-0.08,Before
REGRESSION.HCC1395_tumor.L003,-21,Cycle,Base Insertion,26918,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-21,Cycle,Base Deletion,26918,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-22,Cycle,Base Substitution,26916,35.55,30.00,31.88,-1.88,Before
REGRESSION.HCC1395_tumor.L003,-22,Cycle,Base Insertion,26916,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-22,Cycle,Base Deletion,26916,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-23,Cycle,Base Substitution,26975,28.11,31.00,31.78,-0.78,Before
REGRESSION.HCC1395_tumor.L003,-23,Cycle,Base Insertion,26975,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-23,Cycle,Base Deletion,26975,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-24,Cycle,Base Substitution,27012,35.22,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L003,-24,Cycle,Base Insertion,27012,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-24,Cycle,Base Deletion,27012,1.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-25,Cycle,Base Substitution,26976,34.86,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L003,-25,Cycle,Base Insertion,26976,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-25,Cycle,Base Deletion,26976,2.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-26,Cycle,Base Substitution,26811,40.79,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L003,-26,Cycle,Base Insertion,26811,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-26,Cycle,Base Deletion,26811,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-27,Cycle,Base Substitution,26807,34.88,30.00,30.04,-0.04,Before
REGRESSION.HCC1395_tumor.L003,-27,Cycle,Base Insertion,26807,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-27,Cycle,Base Deletion,26807,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-28,Cycle,Base Substitution,26825,56.64,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L003,-28,Cycle,Base Insertion,26825,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-28,Cycle,Base Deletion,26825,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-29,Cycle,Base Substitution,26783,40.81,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L003,-29,Cycle,Base Insertion,26783,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-29,Cycle,Base Deletion,26783,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-3,Cycle,Base Substitution,27158,69.20,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L003,-30,Cycle,Base Substitution,26821,38.38,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L003,-30,Cycle,Base Insertion,26819,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-30,Cycle,Base Deletion,26819,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-31,Cycle,Base Substitution,26838,35.74,30.00,30.38,-0.38,Before
REGRESSION.HCC1395_tumor.L003,-31,Cycle,Base Insertion,26836,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-31,Cycle,Base Deletion,26836,2.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-32,Cycle,Base Substitution,26958,33.21,30.00,30.28,-0.28,Before
REGRESSION.HCC1395_tumor.L003,-32,Cycle,Base Insertion,26955,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-32,Cycle,Base Deletion,26955,2.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-33,Cycle,Base Substitution,26795,34.89,30.00,30.78,-0.78,Before
REGRESSION.HCC1395_tumor.L003,-33,Cycle,Base Insertion,26793,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-33,Cycle,Base Deletion,26793,2.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-34,Cycle,Base Substitution,26756,30.29,30.00,30.34,-0.34,Before
REGRESSION.HCC1395_tumor.L003,-34,Cycle,Base Insertion,26755,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-34,Cycle,Base Deletion,26755,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-35,Cycle,Base Substitution,26805,35.81,30.00,30.65,-0.65,Before
REGRESSION.HCC1395_tumor.L003,-35,Cycle,Base Insertion,26805,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-35,Cycle,Base Deletion,26805,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-36,Cycle,Base Substitution,26821,39.16,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L003,-36,Cycle,Base Insertion,26821,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-36,Cycle,Base Deletion,26821,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-37,Cycle,Base Substitution,26688,50.30,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L003,-37,Cycle,Base Insertion,26688,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-37,Cycle,Base Deletion,26688,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-38,Cycle,Base Substitution,26763,42.85,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L003,-38,Cycle,Base Insertion,26763,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-38,Cycle,Base Deletion,26763,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-39,Cycle,Base Substitution,26752,32.92,30.00,30.24,-0.24,Before
REGRESSION.HCC1395_tumor.L003,-39,Cycle,Base Insertion,26750,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-39,Cycle,Base Deletion,26750,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-4,Cycle,Base Substitution,27044,70.54,28.00,30.12,-2.12,Before
REGRESSION.HCC1395_tumor.L003,-40,Cycle,Base Substitution,26838,49.03,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L003,-40,Cycle,Base Insertion,26836,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-40,Cycle,Base Deletion,26836,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-41,Cycle,Base Substitution,26598,43.40,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L003,-41,Cycle,Base Insertion,26597,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-41,Cycle,Base Deletion,26597,1.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-42,Cycle,Base Substitution,26572,25.20,30.00,30.29,-0.29,Before
REGRESSION.HCC1395_tumor.L003,-42,Cycle,Base Insertion,26570,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-42,Cycle,Base Deletion,26570,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-43,Cycle,Base Substitution,26732,36.65,30.00,30.64,-0.64,Before
REGRESSION.HCC1395_tumor.L003,-43,Cycle,Base Insertion,26729,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-43,Cycle,Base Deletion,26729,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-44,Cycle,Base Substitution,26652,30.40,30.00,30.17,-0.17,Before
REGRESSION.HCC1395_tumor.L003,-44,Cycle,Base Insertion,26650,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-44,Cycle,Base Deletion,26650,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-45,Cycle,Base Substitution,26817,30.90,30.00,30.68,-0.68,Before
REGRESSION.HCC1395_tumor.L003,-45,Cycle,Base Insertion,26814,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-45,Cycle,Base Deletion,26814,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-46,Cycle,Base Substitution,26613,35.25,30.00,30.79,-0.79,Before
REGRESSION.HCC1395_tumor.L003,-46,Cycle,Base Insertion,26611,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-46,Cycle,Base Deletion,26611,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-47,Cycle,Base Substitution,26696,44.58,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L003,-47,Cycle,Base Insertion,26694,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-47,Cycle,Base Deletion,26694,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-48,Cycle,Base Substitution,26651,32.39,30.00,30.45,-0.45,Before
REGRESSION.HCC1395_tumor.L003,-48,Cycle,Base Insertion,26648,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-48,Cycle,Base Deletion,26648,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-49,Cycle,Base Substitution,26634,46.52,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L003,-49,Cycle,Base Insertion,26626,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-49,Cycle,Base Deletion,26626,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-5,Cycle,Base Substitution,27132,48.92,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L003,-5,Cycle,Base Insertion,27132,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-5,Cycle,Base Deletion,27132,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-50,Cycle,Base Substitution,26651,32.22,30.00,30.76,-0.76,Before
REGRESSION.HCC1395_tumor.L003,-50,Cycle,Base Insertion,26645,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-50,Cycle,Base Deletion,26645,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-51,Cycle,Base Substitution,26583,38.37,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L003,-51,Cycle,Base Insertion,26571,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-51,Cycle,Base Deletion,26571,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-52,Cycle,Base Substitution,26553,28.55,30.00,30.62,-0.62,Before
REGRESSION.HCC1395_tumor.L003,-52,Cycle,Base Insertion,26539,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-52,Cycle,Base Deletion,26539,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-53,Cycle,Base Substitution,26459,31.93,30.00,30.63,-0.63,Before
REGRESSION.HCC1395_tumor.L003,-53,Cycle,Base Insertion,26440,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-53,Cycle,Base Deletion,26440,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-54,Cycle,Base Substitution,26521,42.66,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L003,-54,Cycle,Base Insertion,26497,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-54,Cycle,Base Deletion,26497,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-55,Cycle,Base Substitution,26552,42.75,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L003,-55,Cycle,Base Insertion,26523,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-55,Cycle,Base Deletion,26523,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-56,Cycle,Base Substitution,26450,37.18,30.00,30.33,-0.33,Before
REGRESSION.HCC1395_tumor.L003,-56,Cycle,Base Insertion,26418,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-56,Cycle,Base Deletion,26418,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-57,Cycle,Base Substitution,26501,33.04,30.00,30.78,-0.78,Before
REGRESSION.HCC1395_tumor.L003,-57,Cycle,Base Insertion,26463,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-57,Cycle,Base Deletion,26463,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-58,Cycle,Base Substitution,26485,34.26,30.00,30.92,-0.92,Before
REGRESSION.HCC1395_tumor.L003,-58,Cycle,Base Insertion,26443,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-58,Cycle,Base Deletion,26443,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-59,Cycle,Base Substitution,26592,39.19,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L003,-59,Cycle,Base Insertion,26543,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-59,Cycle,Base Deletion,26543,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-6,Cycle,Base Substitution,26976,49.86,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L003,-6,Cycle,Base Insertion,26976,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-6,Cycle,Base Deletion,26976,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-60,Cycle,Base Substitution,26536,44.22,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L003,-60,Cycle,Base Insertion,26487,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-60,Cycle,Base Deletion,26487,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-61,Cycle,Base Substitution,26266,31.85,30.00,30.64,-0.64,Before
REGRESSION.HCC1395_tumor.L003,-61,Cycle,Base Insertion,26214,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-61,Cycle,Base Deletion,26214,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-62,Cycle,Base Substitution,26323,33.96,30.00,30.99,-0.99,Before
REGRESSION.HCC1395_tumor.L003,-62,Cycle,Base Insertion,26268,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-62,Cycle,Base Deletion,26268,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-63,Cycle,Base Substitution,26439,43.66,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L003,-63,Cycle,Base Insertion,26374,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-63,Cycle,Base Deletion,26374,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-64,Cycle,Base Substitution,26477,42.90,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L003,-64,Cycle,Base Insertion,26406,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-64,Cycle,Base Deletion,26406,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-65,Cycle,Base Substitution,26466,31.27,30.00,30.95,-0.95,Before
REGRESSION.HCC1395_tumor.L003,-65,Cycle,Base Insertion,26378,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-65,Cycle,Base Deletion,26378,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-66,Cycle,Base Substitution,26558,44.57,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L003,-66,Cycle,Base Insertion,26469,1.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-66,Cycle,Base Deletion,26469,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-67,Cycle,Base Substitution,26298,37.12,30.00,30.52,-0.52,Before
REGRESSION.HCC1395_tumor.L003,-67,Cycle,Base Insertion,26218,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-67,Cycle,Base Deletion,26218,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-68,Cycle,Base Substitution,26390,41.73,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L003,-68,Cycle,Base Insertion,26297,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-68,Cycle,Base Deletion,26297,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-69,Cycle,Base Substitution,26318,38.86,29.00,30.47,-1.47,Before
REGRESSION.HCC1395_tumor.L003,-69,Cycle,Base Insertion,26219,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-69,Cycle,Base Deletion,26219,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-7,Cycle,Base Substitution,26939,48.04,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L003,-7,Cycle,Base Insertion,26939,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-7,Cycle,Base Deletion,26939,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-70,Cycle,Base Substitution,26398,41.71,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L003,-70,Cycle,Base Insertion,26300,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-70,Cycle,Base Deletion,26300,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-71,Cycle,Base Substitution,26334,44.90,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L003,-71,Cycle,Base Insertion,26212,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-71,Cycle,Base Deletion,26212,1.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-72,Cycle,Base Substitution,26175,42.27,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L003,-72,Cycle,Base Insertion,26048,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-72,Cycle,Base Deletion,26048,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-73,Cycle,Base Substitution,26148,33.65,30.00,30.51,-0.51,Before
REGRESSION.HCC1395_tumor.L003,-73,Cycle,Base Insertion,26018,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-73,Cycle,Base Deletion,26018,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-74,Cycle,Base Substitution,26206,33.45,30.00,30.22,-0.22,Before
REGRESSION.HCC1395_tumor.L003,-74,Cycle,Base Insertion,26070,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-74,Cycle,Base Deletion,26070,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-75,Cycle,Base Substitution,26174,37.20,30.00,30.46,-0.46,Before
REGRESSION.HCC1395_tumor.L003,-75,Cycle,Base Insertion,26039,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-75,Cycle,Base Deletion,26039,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-76,Cycle,Base Substitution,26139,42.51,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L003,-76,Cycle,Base Insertion,25996,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-76,Cycle,Base Deletion,25996,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-77,Cycle,Base Substitution,26059,40.86,29.00,30.51,-1.51,Before
REGRESSION.HCC1395_tumor.L003,-77,Cycle,Base Insertion,25913,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-77,Cycle,Base Deletion,25913,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-78,Cycle,Base Substitution,25965,44.02,29.00,30.77,-1.77,Before
REGRESSION.HCC1395_tumor.L003,-78,Cycle,Base Insertion,25816,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-78,Cycle,Base Deletion,25816,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-79,Cycle,Base Substitution,25940,48.43,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L003,-79,Cycle,Base Insertion,25785,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-79,Cycle,Base Deletion,25785,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-8,Cycle,Base Substitution,27039,43.31,29.00,30.94,-1.94,Before
REGRESSION.HCC1395_tumor.L003,-8,Cycle,Base Insertion,27039,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-8,Cycle,Base Deletion,27039,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-80,Cycle,Base Substitution,25904,42.80,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L003,-80,Cycle,Base Insertion,25749,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-80,Cycle,Base Deletion,25749,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-81,Cycle,Base Substitution,25940,41.85,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L003,-81,Cycle,Base Insertion,25777,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-81,Cycle,Base Deletion,25777,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-82,Cycle,Base Substitution,25859,47.55,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L003,-82,Cycle,Base Insertion,25681,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-82,Cycle,Base Deletion,25681,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-83,Cycle,Base Substitution,25767,45.31,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L003,-83,Cycle,Base Insertion,25573,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-83,Cycle,Base Deletion,25573,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-84,Cycle,Base Substitution,25783,48.15,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L003,-84,Cycle,Base Insertion,25591,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-84,Cycle,Base Deletion,25591,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-85,Cycle,Base Substitution,25743,50.43,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L003,-85,Cycle,Base Insertion,25565,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-85,Cycle,Base Deletion,25565,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-86,Cycle,Base Substitution,25493,57.64,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L003,-86,Cycle,Base Insertion,25314,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-86,Cycle,Base Deletion,25314,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-87,Cycle,Base Substitution,25704,44.35,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L003,-87,Cycle,Base Insertion,25508,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-87,Cycle,Base Deletion,25508,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-88,Cycle,Base Substitution,25642,44.95,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L003,-88,Cycle,Base Insertion,25443,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-88,Cycle,Base Deletion,25443,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-89,Cycle,Base Substitution,25558,52.39,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L003,-89,Cycle,Base Insertion,25353,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-89,Cycle,Base Deletion,25353,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-9,Cycle,Base Substitution,27021,43.04,30.00,31.16,-1.16,Before
REGRESSION.HCC1395_tumor.L003,-9,Cycle,Base Insertion,27021,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-9,Cycle,Base Deletion,27021,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-90,Cycle,Base Substitution,25497,38.58,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L003,-90,Cycle,Base Insertion,25290,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-90,Cycle,Base Deletion,25290,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-91,Cycle,Base Substitution,25382,42.93,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L003,-91,Cycle,Base Insertion,25176,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-91,Cycle,Base Deletion,25176,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-92,Cycle,Base Substitution,25288,42.65,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L003,-92,Cycle,Base Insertion,25062,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-92,Cycle,Base Deletion,25062,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-93,Cycle,Base Substitution,25298,59.84,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L003,-93,Cycle,Base Insertion,25084,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-93,Cycle,Base Deletion,25084,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-94,Cycle,Base Substitution,25158,37.43,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L003,-94,Cycle,Base Insertion,24942,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-94,Cycle,Base Deletion,24942,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-95,Cycle,Base Substitution,25171,37.64,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L003,-95,Cycle,Base Insertion,24950,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-95,Cycle,Base Deletion,24950,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-96,Cycle,Base Substitution,25126,57.66,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L003,-96,Cycle,Base Insertion,24891,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-96,Cycle,Base Deletion,24891,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-97,Cycle,Base Substitution,24989,44.74,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L003,-97,Cycle,Base Insertion,24728,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-97,Cycle,Base Deletion,24728,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-98,Cycle,Base Substitution,25116,46.02,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L003,-98,Cycle,Base Insertion,24860,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-98,Cycle,Base Deletion,24860,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-99,Cycle,Base Substitution,24880,45.00,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L003,-99,Cycle,Base Insertion,24634,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,-99,Cycle,Base Deletion,24634,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,1,Cycle,Base Substitution,26700,61.99,27.00,28.66,-1.66,Before
REGRESSION.HCC1395_tumor.L003,10,Cycle,Base Substitution,26948,38.16,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L003,10,Cycle,Base Insertion,26948,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,10,Cycle,Base Deletion,26948,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,100,Cycle,Base Substitution,24766,45.97,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L003,100,Cycle,Base Insertion,24519,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,100,Cycle,Base Deletion,24519,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,101,Cycle,Base Substitution,24857,45.99,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L003,101,Cycle,Base Insertion,24614,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,101,Cycle,Base Deletion,24614,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,102,Cycle,Base Substitution,24846,44.14,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L003,102,Cycle,Base Insertion,24589,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,102,Cycle,Base Deletion,24589,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,103,Cycle,Base Substitution,24647,36.25,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L003,103,Cycle,Base Insertion,24394,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,103,Cycle,Base Deletion,24394,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,104,Cycle,Base Substitution,24758,40.33,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L003,104,Cycle,Base Insertion,24507,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,104,Cycle,Base Deletion,24507,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,105,Cycle,Base Substitution,24611,41.23,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L003,105,Cycle,Base Insertion,24362,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,105,Cycle,Base Deletion,24362,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,106,Cycle,Base Substitution,24464,44.46,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L003,106,Cycle,Base Insertion,24206,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,106,Cycle,Base Deletion,24206,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,107,Cycle,Base Substitution,24510,51.58,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L003,107,Cycle,Base Insertion,24254,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,107,Cycle,Base Deletion,24254,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,108,Cycle,Base Substitution,24349,41.32,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L003,108,Cycle,Base Insertion,24068,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,108,Cycle,Base Deletion,24068,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,109,Cycle,Base Substitution,24438,40.94,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L003,109,Cycle,Base Insertion,24161,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,109,Cycle,Base Deletion,24161,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,11,Cycle,Base Substitution,26917,35.49,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L003,11,Cycle,Base Insertion,26917,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,11,Cycle,Base Deletion,26917,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,110,Cycle,Base Substitution,24251,55.01,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L003,110,Cycle,Base Insertion,23971,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,110,Cycle,Base Deletion,23971,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,111,Cycle,Base Substitution,24186,47.00,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L003,111,Cycle,Base Insertion,23898,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,111,Cycle,Base Deletion,23898,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,112,Cycle,Base Substitution,24073,51.88,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L003,112,Cycle,Base Insertion,23804,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,112,Cycle,Base Deletion,23804,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,113,Cycle,Base Substitution,24178,43.96,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L003,113,Cycle,Base Insertion,23918,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,113,Cycle,Base Deletion,23918,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,114,Cycle,Base Substitution,24005,47.19,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L003,114,Cycle,Base Insertion,23750,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,114,Cycle,Base Deletion,23750,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,115,Cycle,Base Substitution,24003,51.97,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L003,115,Cycle,Base Insertion,23733,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,115,Cycle,Base Deletion,23733,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,116,Cycle,Base Substitution,23927,47.83,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L003,116,Cycle,Base Insertion,23659,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,116,Cycle,Base Deletion,23659,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,117,Cycle,Base Substitution,23944,49.26,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L003,117,Cycle,Base Insertion,23661,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,117,Cycle,Base Deletion,23661,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,118,Cycle,Base Substitution,23757,35.36,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L003,118,Cycle,Base Insertion,23475,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,118,Cycle,Base Deletion,23475,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,119,Cycle,Base Substitution,23726,37.94,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L003,119,Cycle,Base Insertion,23430,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,119,Cycle,Base Deletion,23430,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,12,Cycle,Base Substitution,26885,29.84,31.00,31.68,-0.68,Before
REGRESSION.HCC1395_tumor.L003,12,Cycle,Base Insertion,26885,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,12,Cycle,Base Deletion,26885,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,120,Cycle,Base Substitution,23675,42.96,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L003,120,Cycle,Base Insertion,23390,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,120,Cycle,Base Deletion,23390,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,121,Cycle,Base Substitution,23585,49.34,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L003,121,Cycle,Base Insertion,23294,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,121,Cycle,Base Deletion,23294,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,122,Cycle,Base Substitution,23621,38.71,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L003,122,Cycle,Base Insertion,23333,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,122,Cycle,Base Deletion,23333,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,123,Cycle,Base Substitution,23486,35.94,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L003,123,Cycle,Base Insertion,23195,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,123,Cycle,Base Deletion,23195,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,124,Cycle,Base Substitution,23431,49.43,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L003,124,Cycle,Base Insertion,23115,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,124,Cycle,Base Deletion,23115,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,125,Cycle,Base Substitution,23283,39.22,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L003,125,Cycle,Base Insertion,22976,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,125,Cycle,Base Deletion,22976,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,126,Cycle,Base Substitution,23365,50.22,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L003,126,Cycle,Base Insertion,23042,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,126,Cycle,Base Deletion,23042,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,127,Cycle,Base Substitution,23283,39.69,29.00,29.95,-0.95,Before
REGRESSION.HCC1395_tumor.L003,127,Cycle,Base Insertion,22963,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,127,Cycle,Base Deletion,22963,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,128,Cycle,Base Substitution,23158,51.69,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L003,128,Cycle,Base Insertion,22854,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,128,Cycle,Base Deletion,22854,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,129,Cycle,Base Substitution,23053,53.41,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L003,129,Cycle,Base Insertion,22757,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,129,Cycle,Base Deletion,22757,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,13,Cycle,Base Substitution,26893,22.73,31.00,31.33,-0.33,Before
REGRESSION.HCC1395_tumor.L003,13,Cycle,Base Insertion,26893,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,13,Cycle,Base Deletion,26893,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,130,Cycle,Base Substitution,22995,38.78,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L003,130,Cycle,Base Insertion,22685,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,130,Cycle,Base Deletion,22685,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,131,Cycle,Base Substitution,22831,46.59,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L003,131,Cycle,Base Insertion,22521,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,131,Cycle,Base Deletion,22521,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,132,Cycle,Base Substitution,22977,36.68,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L003,132,Cycle,Base Insertion,22665,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,132,Cycle,Base Deletion,22665,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,133,Cycle,Base Substitution,22747,50.20,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L003,133,Cycle,Base Insertion,22414,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,133,Cycle,Base Deletion,22414,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,134,Cycle,Base Substitution,22728,52.50,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L003,134,Cycle,Base Insertion,22386,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,134,Cycle,Base Deletion,22386,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,135,Cycle,Base Substitution,22568,44.39,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L003,135,Cycle,Base Insertion,22221,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,135,Cycle,Base Deletion,22221,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,136,Cycle,Base Substitution,22589,41.33,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L003,136,Cycle,Base Insertion,22241,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,136,Cycle,Base Deletion,22241,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,137,Cycle,Base Substitution,22465,36.40,29.00,29.75,-0.75,Before
REGRESSION.HCC1395_tumor.L003,137,Cycle,Base Insertion,22103,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,137,Cycle,Base Deletion,22103,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,138,Cycle,Base Substitution,22473,41.11,29.00,30.00,-1.00,Before
REGRESSION.HCC1395_tumor.L003,138,Cycle,Base Insertion,22125,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,138,Cycle,Base Deletion,22125,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,139,Cycle,Base Substitution,22324,48.48,28.00,29.91,-1.91,Before
REGRESSION.HCC1395_tumor.L003,139,Cycle,Base Insertion,21987,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,139,Cycle,Base Deletion,21987,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,14,Cycle,Base Substitution,26863,26.67,31.00,31.61,-0.61,Before
REGRESSION.HCC1395_tumor.L003,14,Cycle,Base Insertion,26863,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,14,Cycle,Base Deletion,26863,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,140,Cycle,Base Substitution,22258,52.07,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L003,140,Cycle,Base Insertion,21933,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,140,Cycle,Base Deletion,21933,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,141,Cycle,Base Substitution,22184,41.69,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L003,141,Cycle,Base Insertion,21858,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,141,Cycle,Base Deletion,21858,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,142,Cycle,Base Substitution,22106,43.73,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L003,142,Cycle,Base Insertion,21742,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,142,Cycle,Base Deletion,21742,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,143,Cycle,Base Substitution,22056,50.16,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L003,143,Cycle,Base Insertion,21700,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,143,Cycle,Base Deletion,21700,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,144,Cycle,Base Substitution,22021,37.87,29.00,29.89,-0.89,Before
REGRESSION.HCC1395_tumor.L003,144,Cycle,Base Insertion,21651,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,144,Cycle,Base Deletion,21651,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,145,Cycle,Base Substitution,21820,41.87,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L003,145,Cycle,Base Insertion,21462,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,145,Cycle,Base Deletion,21462,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,146,Cycle,Base Substitution,21737,51.89,28.00,29.51,-1.51,Before
REGRESSION.HCC1395_tumor.L003,146,Cycle,Base Insertion,21395,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,146,Cycle,Base Deletion,21395,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,147,Cycle,Base Substitution,21698,54.38,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L003,148,Cycle,Base Substitution,21615,46.64,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L003,149,Cycle,Base Substitution,21460,51.16,28.00,29.72,-1.72,Before
REGRESSION.HCC1395_tumor.L003,15,Cycle,Base Substitution,27040,30.30,31.00,31.61,-0.61,Before
REGRESSION.HCC1395_tumor.L003,15,Cycle,Base Insertion,27040,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,15,Cycle,Base Deletion,27040,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,150,Cycle,Base Substitution,21544,40.73,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L003,16,Cycle,Base Substitution,26988,26.12,32.00,32.80,-0.80,Before
REGRESSION.HCC1395_tumor.L003,16,Cycle,Base Insertion,26988,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,16,Cycle,Base Deletion,26988,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,17,Cycle,Base Substitution,26956,28.01,32.00,33.10,-1.10,Before
REGRESSION.HCC1395_tumor.L003,17,Cycle,Base Insertion,26956,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,17,Cycle,Base Deletion,26956,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,18,Cycle,Base Substitution,26968,20.06,33.00,33.04,-0.04,Before
REGRESSION.HCC1395_tumor.L003,18,Cycle,Base Insertion,26968,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,18,Cycle,Base Deletion,26968,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,19,Cycle,Base Substitution,26865,22.78,32.00,32.62,-0.62,Before
REGRESSION.HCC1395_tumor.L003,19,Cycle,Base Insertion,26865,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,19,Cycle,Base Deletion,26865,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,2,Cycle,Base Substitution,27119,49.75,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L003,20,Cycle,Base Substitution,26840,16.41,32.00,33.00,-1.00,Before
REGRESSION.HCC1395_tumor.L003,20,Cycle,Base Insertion,26840,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,20,Cycle,Base Deletion,26840,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,21,Cycle,Base Substitution,26810,26.85,32.00,33.34,-1.34,Before
REGRESSION.HCC1395_tumor.L003,21,Cycle,Base Insertion,26810,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,21,Cycle,Base Deletion,26810,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,22,Cycle,Base Substitution,26802,22.74,32.00,32.57,-0.57,Before
REGRESSION.HCC1395_tumor.L003,22,Cycle,Base Insertion,26802,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,22,Cycle,Base Deletion,26802,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,23,Cycle,Base Substitution,26884,17.45,33.00,33.16,-0.16,Before
REGRESSION.HCC1395_tumor.L003,23,Cycle,Base Insertion,26884,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,23,Cycle,Base Deletion,26884,2.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,24,Cycle,Base Substitution,26751,22.78,32.00,32.63,-0.63,Before
REGRESSION.HCC1395_tumor.L003,24,Cycle,Base Insertion,26751,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,24,Cycle,Base Deletion,26751,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,25,Cycle,Base Substitution,26751,23.07,32.00,32.51,-0.51,Before
REGRESSION.HCC1395_tumor.L003,25,Cycle,Base Insertion,26751,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,25,Cycle,Base Deletion,26751,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,26,Cycle,Base Substitution,26738,32.24,30.00,31.41,-1.41,Before
REGRESSION.HCC1395_tumor.L003,26,Cycle,Base Insertion,26738,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,26,Cycle,Base Deletion,26738,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,27,Cycle,Base Substitution,26582,31.24,31.00,31.24,-0.24,Before
REGRESSION.HCC1395_tumor.L003,27,Cycle,Base Insertion,26582,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,27,Cycle,Base Deletion,26582,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,28,Cycle,Base Substitution,26647,33.90,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L003,28,Cycle,Base Insertion,26647,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,28,Cycle,Base Deletion,26647,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,29,Cycle,Base Substitution,26860,22.31,31.00,31.76,-0.76,Before
REGRESSION.HCC1395_tumor.L003,29,Cycle,Base Insertion,26859,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,29,Cycle,Base Deletion,26859,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,3,Cycle,Base Substitution,27057,50.36,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L003,30,Cycle,Base Substitution,26803,37.68,30.00,31.69,-1.69,Before
REGRESSION.HCC1395_tumor.L003,30,Cycle,Base Insertion,26800,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,30,Cycle,Base Deletion,26800,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,31,Cycle,Base Substitution,26814,32.95,30.00,31.48,-1.48,Before
REGRESSION.HCC1395_tumor.L003,31,Cycle,Base Insertion,26810,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,31,Cycle,Base Deletion,26810,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,32,Cycle,Base Substitution,26823,38.60,30.00,31.50,-1.50,Before
REGRESSION.HCC1395_tumor.L003,32,Cycle,Base Insertion,26819,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,32,Cycle,Base Deletion,26819,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,33,Cycle,Base Substitution,26734,27.29,31.00,31.72,-0.72,Before
REGRESSION.HCC1395_tumor.L003,33,Cycle,Base Insertion,26732,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,33,Cycle,Base Deletion,26732,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,34,Cycle,Base Substitution,26663,33.23,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L003,34,Cycle,Base Insertion,26662,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,34,Cycle,Base Deletion,26662,2.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,35,Cycle,Base Substitution,26781,35.30,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L003,35,Cycle,Base Insertion,26781,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,35,Cycle,Base Deletion,26781,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,36,Cycle,Base Substitution,26667,38.71,30.00,31.94,-1.94,Before
REGRESSION.HCC1395_tumor.L003,36,Cycle,Base Insertion,26666,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,36,Cycle,Base Deletion,26666,2.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,37,Cycle,Base Substitution,26638,29.88,31.00,31.54,-0.54,Before
REGRESSION.HCC1395_tumor.L003,37,Cycle,Base Insertion,26636,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,37,Cycle,Base Deletion,26636,1.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,38,Cycle,Base Substitution,26653,36.64,30.00,31.40,-1.40,Before
REGRESSION.HCC1395_tumor.L003,38,Cycle,Base Insertion,26652,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,38,Cycle,Base Deletion,26652,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,39,Cycle,Base Substitution,26694,33.10,30.00,30.93,-0.93,Before
REGRESSION.HCC1395_tumor.L003,39,Cycle,Base Insertion,26693,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,39,Cycle,Base Deletion,26693,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,4,Cycle,Base Substitution,27000,66.20,28.00,30.70,-2.70,Before
REGRESSION.HCC1395_tumor.L003,40,Cycle,Base Substitution,26601,25.96,31.00,31.54,-0.54,Before
REGRESSION.HCC1395_tumor.L003,40,Cycle,Base Insertion,26600,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,40,Cycle,Base Deletion,26600,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,41,Cycle,Base Substitution,26624,33.48,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L003,41,Cycle,Base Insertion,26624,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,41,Cycle,Base Deletion,26624,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,42,Cycle,Base Substitution,26600,23.46,31.00,31.59,-0.59,Before
REGRESSION.HCC1395_tumor.L003,42,Cycle,Base Insertion,26599,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,42,Cycle,Base Deletion,26599,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,43,Cycle,Base Substitution,26698,34.22,30.00,31.36,-1.36,Before
REGRESSION.HCC1395_tumor.L003,43,Cycle,Base Insertion,26696,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,43,Cycle,Base Deletion,26696,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,44,Cycle,Base Substitution,26695,35.28,30.00,31.81,-1.81,Before
REGRESSION.HCC1395_tumor.L003,44,Cycle,Base Insertion,26693,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,44,Cycle,Base Deletion,26693,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,45,Cycle,Base Substitution,26633,27.33,31.00,31.35,-0.35,Before
REGRESSION.HCC1395_tumor.L003,45,Cycle,Base Insertion,26630,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,45,Cycle,Base Deletion,26630,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,46,Cycle,Base Substitution,26619,23.88,31.00,31.90,-0.90,Before
REGRESSION.HCC1395_tumor.L003,46,Cycle,Base Insertion,26615,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,46,Cycle,Base Deletion,26615,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,47,Cycle,Base Substitution,26656,30.96,31.00,31.17,-0.17,Before
REGRESSION.HCC1395_tumor.L003,47,Cycle,Base Insertion,26653,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,47,Cycle,Base Deletion,26653,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,48,Cycle,Base Substitution,26577,30.76,31.00,31.24,-0.24,Before
REGRESSION.HCC1395_tumor.L003,48,Cycle,Base Insertion,26573,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,48,Cycle,Base Deletion,26573,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,49,Cycle,Base Substitution,26654,23.63,31.00,31.15,-0.15,Before
REGRESSION.HCC1395_tumor.L003,49,Cycle,Base Insertion,26647,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,49,Cycle,Base Deletion,26647,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,5,Cycle,Base Substitution,27078,48.35,30.00,31.12,-1.12,Before
REGRESSION.HCC1395_tumor.L003,5,Cycle,Base Insertion,27078,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,5,Cycle,Base Deletion,27078,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,50,Cycle,Base Substitution,26586,27.01,31.00,31.39,-0.39,Before
REGRESSION.HCC1395_tumor.L003,50,Cycle,Base Insertion,26579,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,50,Cycle,Base Deletion,26579,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,51,Cycle,Base Substitution,26523,39.02,30.00,31.40,-1.40,Before
REGRESSION.HCC1395_tumor.L003,51,Cycle,Base Insertion,26514,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,51,Cycle,Base Deletion,26514,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,52,Cycle,Base Substitution,26651,36.86,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L003,52,Cycle,Base Insertion,26639,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,52,Cycle,Base Deletion,26639,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,53,Cycle,Base Substitution,26542,30.99,31.00,31.67,-0.67,Before
REGRESSION.HCC1395_tumor.L003,53,Cycle,Base Insertion,26523,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,53,Cycle,Base Deletion,26523,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,54,Cycle,Base Substitution,26470,30.64,31.00,31.77,-0.77,Before
REGRESSION.HCC1395_tumor.L003,54,Cycle,Base Insertion,26443,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,54,Cycle,Base Deletion,26443,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,55,Cycle,Base Substitution,26532,27.90,31.00,31.59,-0.59,Before
REGRESSION.HCC1395_tumor.L003,55,Cycle,Base Insertion,26501,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,55,Cycle,Base Deletion,26501,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,56,Cycle,Base Substitution,26501,36.95,30.00,31.27,-1.27,Before
REGRESSION.HCC1395_tumor.L003,56,Cycle,Base Insertion,26469,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,56,Cycle,Base Deletion,26469,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,57,Cycle,Base Substitution,26511,36.96,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L003,57,Cycle,Base Insertion,26464,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,57,Cycle,Base Deletion,26464,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,58,Cycle,Base Substitution,26451,31.97,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L003,58,Cycle,Base Insertion,26398,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,58,Cycle,Base Deletion,26398,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,59,Cycle,Base Substitution,26446,34.19,30.00,31.21,-1.21,Before
REGRESSION.HCC1395_tumor.L003,59,Cycle,Base Insertion,26393,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,59,Cycle,Base Deletion,26393,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,6,Cycle,Base Substitution,26925,34.70,30.00,31.13,-1.13,Before
REGRESSION.HCC1395_tumor.L003,6,Cycle,Base Insertion,26925,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,6,Cycle,Base Deletion,26925,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,60,Cycle,Base Substitution,26477,34.84,30.00,31.06,-1.06,Before
REGRESSION.HCC1395_tumor.L003,60,Cycle,Base Insertion,26425,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,60,Cycle,Base Deletion,26425,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,61,Cycle,Base Substitution,26327,31.77,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L003,61,Cycle,Base Insertion,26273,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,61,Cycle,Base Deletion,26273,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,62,Cycle,Base Substitution,26375,44.36,29.00,30.99,-1.99,Before
REGRESSION.HCC1395_tumor.L003,62,Cycle,Base Insertion,26319,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,62,Cycle,Base Deletion,26319,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,63,Cycle,Base Substitution,26407,32.87,30.00,31.49,-1.49,Before
REGRESSION.HCC1395_tumor.L003,63,Cycle,Base Insertion,26349,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,63,Cycle,Base Deletion,26349,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,64,Cycle,Base Substitution,26361,30.58,31.00,31.57,-0.57,Before
REGRESSION.HCC1395_tumor.L003,64,Cycle,Base Insertion,26283,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,64,Cycle,Base Deletion,26283,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,65,Cycle,Base Substitution,26406,40.29,30.00,31.48,-1.48,Before
REGRESSION.HCC1395_tumor.L003,65,Cycle,Base Insertion,26325,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,65,Cycle,Base Deletion,26325,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,66,Cycle,Base Substitution,26378,25.59,31.00,31.54,-0.54,Before
REGRESSION.HCC1395_tumor.L003,66,Cycle,Base Insertion,26291,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,66,Cycle,Base Deletion,26291,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,67,Cycle,Base Substitution,26400,28.32,31.00,31.44,-0.44,Before
REGRESSION.HCC1395_tumor.L003,67,Cycle,Base Insertion,26315,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,67,Cycle,Base Deletion,26315,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,68,Cycle,Base Substitution,26201,39.64,30.00,31.13,-1.13,Before
REGRESSION.HCC1395_tumor.L003,68,Cycle,Base Insertion,26112,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,68,Cycle,Base Deletion,26112,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,69,Cycle,Base Substitution,26177,34.04,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L003,69,Cycle,Base Insertion,26084,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,69,Cycle,Base Deletion,26084,1.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,7,Cycle,Base Substitution,26900,41.45,30.00,31.06,-1.06,Before
REGRESSION.HCC1395_tumor.L003,7,Cycle,Base Insertion,26900,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,7,Cycle,Base Deletion,26900,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,70,Cycle,Base Substitution,26302,50.26,29.00,30.77,-1.77,Before
REGRESSION.HCC1395_tumor.L003,70,Cycle,Base Insertion,26205,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,70,Cycle,Base Deletion,26205,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,71,Cycle,Base Substitution,26246,31.21,30.00,30.85,-0.85,Before
REGRESSION.HCC1395_tumor.L003,71,Cycle,Base Insertion,26131,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,71,Cycle,Base Deletion,26131,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,72,Cycle,Base Substitution,26204,39.29,29.00,30.95,-1.95,Before
REGRESSION.HCC1395_tumor.L003,72,Cycle,Base Insertion,26084,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,72,Cycle,Base Deletion,26084,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,73,Cycle,Base Substitution,26110,42.66,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L003,73,Cycle,Base Insertion,25984,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,73,Cycle,Base Deletion,25984,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,74,Cycle,Base Substitution,26118,39.55,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L003,74,Cycle,Base Insertion,25984,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,74,Cycle,Base Deletion,25984,2.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,75,Cycle,Base Substitution,26100,45.92,30.00,31.23,-1.23,Before
REGRESSION.HCC1395_tumor.L003,75,Cycle,Base Insertion,25965,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,75,Cycle,Base Deletion,25965,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,76,Cycle,Base Substitution,26044,46.30,30.00,31.07,-1.07,Before
REGRESSION.HCC1395_tumor.L003,76,Cycle,Base Insertion,25905,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,76,Cycle,Base Deletion,25905,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,77,Cycle,Base Substitution,25920,51.98,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L003,77,Cycle,Base Insertion,25772,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,77,Cycle,Base Deletion,25772,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,78,Cycle,Base Substitution,25946,42.11,30.00,31.03,-1.03,Before
REGRESSION.HCC1395_tumor.L003,78,Cycle,Base Insertion,25798,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,78,Cycle,Base Deletion,25798,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,79,Cycle,Base Substitution,25842,40.47,29.00,30.88,-1.88,Before
REGRESSION.HCC1395_tumor.L003,79,Cycle,Base Insertion,25687,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,79,Cycle,Base Deletion,25687,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,8,Cycle,Base Substitution,27028,36.17,30.00,30.93,-0.93,Before
REGRESSION.HCC1395_tumor.L003,8,Cycle,Base Insertion,27028,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,8,Cycle,Base Deletion,27028,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,80,Cycle,Base Substitution,25876,38.19,29.00,30.96,-1.96,Before
REGRESSION.HCC1395_tumor.L003,80,Cycle,Base Insertion,25715,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,80,Cycle,Base Deletion,25715,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,81,Cycle,Base Substitution,25823,36.56,29.00,30.85,-1.85,Before
REGRESSION.HCC1395_tumor.L003,81,Cycle,Base Insertion,25659,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,81,Cycle,Base Deletion,25659,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,82,Cycle,Base Substitution,25725,41.41,29.00,30.73,-1.73,Before
REGRESSION.HCC1395_tumor.L003,82,Cycle,Base Insertion,25560,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,82,Cycle,Base Deletion,25560,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,83,Cycle,Base Substitution,25747,34.87,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L003,83,Cycle,Base Insertion,25560,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,83,Cycle,Base Deletion,25560,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,84,Cycle,Base Substitution,25727,39.30,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L003,84,Cycle,Base Insertion,25544,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,84,Cycle,Base Deletion,25544,2.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,85,Cycle,Base Substitution,25679,41.43,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L003,85,Cycle,Base Insertion,25491,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,85,Cycle,Base Deletion,25491,2.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,86,Cycle,Base Substitution,25636,34.67,30.00,30.84,-0.84,Before
REGRESSION.HCC1395_tumor.L003,86,Cycle,Base Insertion,25449,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,86,Cycle,Base Deletion,25449,2.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,87,Cycle,Base Substitution,25483,38.01,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L003,87,Cycle,Base Insertion,25291,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,87,Cycle,Base Deletion,25291,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,88,Cycle,Base Substitution,25548,40.30,30.00,31.01,-1.01,Before
REGRESSION.HCC1395_tumor.L003,88,Cycle,Base Insertion,25350,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,88,Cycle,Base Deletion,25350,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,89,Cycle,Base Substitution,25508,37.92,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L003,89,Cycle,Base Insertion,25313,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,89,Cycle,Base Deletion,25313,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,9,Cycle,Base Substitution,27066,34.35,30.00,31.26,-1.26,Before
REGRESSION.HCC1395_tumor.L003,9,Cycle,Base Insertion,27066,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,9,Cycle,Base Deletion,27066,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,90,Cycle,Base Substitution,25434,41.38,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L003,90,Cycle,Base Insertion,25235,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,90,Cycle,Base Deletion,25235,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,91,Cycle,Base Substitution,25289,40.75,29.00,30.73,-1.73,Before
REGRESSION.HCC1395_tumor.L003,91,Cycle,Base Insertion,25084,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,91,Cycle,Base Deletion,25084,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,92,Cycle,Base Substitution,25261,41.47,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L003,92,Cycle,Base Insertion,25044,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,92,Cycle,Base Deletion,25044,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,93,Cycle,Base Substitution,25233,41.93,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L003,93,Cycle,Base Insertion,25010,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,93,Cycle,Base Deletion,25010,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,94,Cycle,Base Substitution,25239,56.37,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L003,94,Cycle,Base Insertion,25006,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,94,Cycle,Base Deletion,25006,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,95,Cycle,Base Substitution,25201,40.73,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L003,95,Cycle,Base Insertion,24966,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,95,Cycle,Base Deletion,24966,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,96,Cycle,Base Substitution,25091,35.83,29.00,30.70,-1.70,Before
REGRESSION.HCC1395_tumor.L003,96,Cycle,Base Insertion,24853,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,96,Cycle,Base Deletion,24853,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,97,Cycle,Base Substitution,25061,42.38,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L003,97,Cycle,Base Insertion,24810,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,97,Cycle,Base Deletion,24810,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,98,Cycle,Base Substitution,24973,49.66,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L003,98,Cycle,Base Insertion,24730,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,98,Cycle,Base Deletion,24730,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,99,Cycle,Base Substitution,24813,39.60,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L003,99,Cycle,Base Insertion,24578,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,99,Cycle,Base Deletion,24578,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,12,QualityScore,Base Substitution,80727,7861.87,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L003,24,QualityScore,Base Substitution,195533,773.94,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L003,40,QualityScore,Base Substitution,7299922,5491.44,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L003,45,QualityScore,Base Insertion,7576182,147.81,46.00,45.00,1.00,Before
REGRESSION.HCC1395_tumor.L003,45,QualityScore,Base Deletion,7576182,341.63,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L004,AA,Context,Base Substitution,525242,1332.72,26.00,29.54,-3.54,Before
REGRESSION.HCC1395_tumor.L004,AAA,Context,Base Insertion,179190,19.33,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L004,AAA,Context,Base Deletion,179190,86.82,41.00,45.00,-4.00,Before
REGRESSION.HCC1395_tumor.L004,AAC,Context,Base Insertion,85708,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AAC,Context,Base Deletion,85708,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AAG,Context,Base Insertion,134041,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AAG,Context,Base Deletion,134041,5.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AAT,Context,Base Insertion,101845,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AAT,Context,Base Deletion,101845,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AC,Context,Base Substitution,357020,1147.96,25.00,28.74,-3.74,Before
REGRESSION.HCC1395_tumor.L004,ACA,Context,Base Insertion,131746,4.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ACA,Context,Base Deletion,131746,7.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ACC,Context,Base Insertion,104352,2.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ACC,Context,Base Deletion,104352,2.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ACG,Context,Base Insertion,20687,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ACG,Context,Base Deletion,20687,2.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ACT,Context,Base Insertion,105467,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ACT,Context,Base Deletion,105467,6.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AG,Context,Base Substitution,561116,545.69,30.00,31.85,-1.85,Before
REGRESSION.HCC1395_tumor.L004,AGA,Context,Base Insertion,151451,2.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AGA,Context,Base Deletion,151451,5.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AGC,Context,Base Insertion,139431,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AGC,Context,Base Deletion,139431,3.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AGG,Context,Base Insertion,162867,5.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AGG,Context,Base Deletion,162867,4.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AGT,Context,Base Insertion,103177,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AGT,Context,Base Deletion,103177,4.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,AT,Context,Base Substitution,369391,472.09,29.00,32.09,-3.09,Before
REGRESSION.HCC1395_tumor.L004,ATA,Context,Base Insertion,74582,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ATA,Context,Base Deletion,74582,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ATC,Context,Base Insertion,78928,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ATC,Context,Base Deletion,78928,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ATG,Context,Base Insertion,114074,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ATG,Context,Base Deletion,114074,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ATT,Context,Base Insertion,108958,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,ATT,Context,Base Deletion,108958,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CA,Context,Base Substitution,591973,1250.50,27.00,30.00,-3.00,Before
REGRESSION.HCC1395_tumor.L004,CAA,Context,Base Insertion,112309,2.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CAA,Context,Base Deletion,112309,3.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CAC,Context,Base Insertion,125002,6.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CAC,Context,Base Deletion,125002,9.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CAG,Context,Base Insertion,212729,5.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CAG,Context,Base Deletion,212729,10.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CAT,Context,Base Insertion,110542,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CAT,Context,Base Deletion,110542,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CC,Context,Base Substitution,548992,1764.61,25.00,29.00,-4.00,Before
REGRESSION.HCC1395_tumor.L004,CCA,Context,Base Insertion,175232,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CCA,Context,Base Deletion,175232,2.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CCC,Context,Base Insertion,150401,7.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CCC,Context,Base Deletion,150401,8.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CCG,Context,Base Insertion,37289,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CCG,Context,Base Deletion,37289,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CCT,Context,Base Insertion,177909,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CCT,Context,Base Deletion,177909,7.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CG,Context,Base Substitution,112995,324.82,26.00,29.82,-3.82,Before
REGRESSION.HCC1395_tumor.L004,CGA,Context,Base Insertion,44129,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CGA,Context,Base Deletion,44129,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CGC,Context,Base Insertion,62891,2.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CGC,Context,Base Deletion,62891,3.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CGG,Context,Base Insertion,76796,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CGG,Context,Base Deletion,76796,3.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CGT,Context,Base Insertion,49091,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CGT,Context,Base Deletion,49091,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CT,Context,Base Substitution,596267,438.97,31.00,32.48,-1.48,Before
REGRESSION.HCC1395_tumor.L004,CTA,Context,Base Insertion,58564,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CTA,Context,Base Deletion,58564,4.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CTC,Context,Base Insertion,145732,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CTC,Context,Base Deletion,145732,9.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CTG,Context,Base Insertion,214789,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CTG,Context,Base Deletion,214789,5.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CTT,Context,Base Insertion,145977,2.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,CTT,Context,Base Deletion,145977,5.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GA,Context,Base Substitution,495491,826.09,28.00,29.66,-1.66,Before
REGRESSION.HCC1395_tumor.L004,GAA,Context,Base Insertion,140982,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GAA,Context,Base Deletion,140982,3.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GAC,Context,Base Insertion,83702,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GAC,Context,Base Deletion,83702,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GAG,Context,Base Insertion,150437,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GAG,Context,Base Deletion,150437,4.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GAT,Context,Base Insertion,83200,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GAT,Context,Base Deletion,83200,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GC,Context,Base Substitution,486266,1142.28,27.00,30.29,-3.29,Before
REGRESSION.HCC1395_tumor.L004,GCA,Context,Base Insertion,148307,1.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GCA,Context,Base Deletion,148307,4.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GCC,Context,Base Insertion,146113,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GCC,Context,Base Deletion,146113,6.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GCG,Context,Base Insertion,35844,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GCG,Context,Base Deletion,35844,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GCT,Context,Base Insertion,154914,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GCT,Context,Base Deletion,154914,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GG,Context,Base Substitution,575697,781.58,29.00,31.85,-2.85,Before
REGRESSION.HCC1395_tumor.L004,GGA,Context,Base Insertion,156799,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GGA,Context,Base Deletion,156799,5.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GGC,Context,Base Insertion,144568,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GGC,Context,Base Deletion,144568,4.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GGG,Context,Base Insertion,157990,4.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GGG,Context,Base Deletion,157990,12.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GGT,Context,Base Insertion,114516,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GGT,Context,Base Deletion,114516,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GT,Context,Base Substitution,407387,716.41,28.00,32.16,-4.16,Before
REGRESSION.HCC1395_tumor.L004,GTA,Context,Base Insertion,66272,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GTA,Context,Base Deletion,66272,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GTC,Context,Base Insertion,90850,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GTC,Context,Base Deletion,90850,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GTG,Context,Base Insertion,139651,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GTG,Context,Base Deletion,139651,7.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GTT,Context,Base Insertion,100115,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,GTT,Context,Base Deletion,100115,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TA,Context,Base Substitution,289042,761.23,26.00,29.70,-3.70,Before
REGRESSION.HCC1395_tumor.L004,TAA,Context,Base Insertion,88176,2.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TAA,Context,Base Deletion,88176,4.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TAC,Context,Base Insertion,60321,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TAC,Context,Base Deletion,60321,4.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TAG,Context,Base Insertion,59520,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TAG,Context,Base Deletion,59520,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TAT,Context,Base Insertion,71132,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TAT,Context,Base Deletion,71132,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TC,Context,Base Substitution,447823,1081.97,26.00,30.64,-4.64,Before
REGRESSION.HCC1395_tumor.L004,TCA,Context,Base Insertion,132048,2.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TCA,Context,Base Deletion,132048,6.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TCC,Context,Base Insertion,144464,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TCC,Context,Base Deletion,144464,2.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TCG,Context,Base Insertion,18327,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TCG,Context,Base Deletion,18327,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TCT,Context,Base Insertion,153798,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TCT,Context,Base Deletion,153798,7.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TG,Context,Base Substitution,586832,450.39,31.00,31.82,-0.82,Before
REGRESSION.HCC1395_tumor.L004,TGA,Context,Base Insertion,139263,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TGA,Context,Base Deletion,139263,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TGC,Context,Base Insertion,136278,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TGC,Context,Base Deletion,136278,3.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TGG,Context,Base Insertion,173744,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TGG,Context,Base Deletion,173744,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TGT,Context,Base Insertion,137893,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TGT,Context,Base Deletion,137893,8.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TT,Context,Base Substitution,539688,708.22,29.00,32.79,-3.79,Before
REGRESSION.HCC1395_tumor.L004,TTA,Context,Base Insertion,87380,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TTA,Context,Base Deletion,87380,4.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TTC,Context,Base Insertion,129544,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TTC,Context,Base Deletion,129544,5.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TTG,Context,Base Insertion,114162,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TTG,Context,Base Deletion,114162,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,TTT,Context,Base Insertion,180974,20.65,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L004,TTT,Context,Base Deletion,180974,52.06,43.00,45.00,-2.00,Before
REGRESSION.HCC1395_tumor.L004,-1,Cycle,Base Substitution,26598,93.44,25.00,25.69,-0.69,Before
REGRESSION.HCC1395_tumor.L004,-10,Cycle,Base Substitution,26867,30.48,31.00,31.47,-0.47,Before
REGRESSION.HCC1395_tumor.L004,-10,Cycle,Base Insertion,26867,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-10,Cycle,Base Deletion,26867,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-100,Cycle,Base Substitution,24788,50.18,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L004,-100,Cycle,Base Insertion,24558,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-100,Cycle,Base Deletion,24558,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-101,Cycle,Base Substitution,24736,45.33,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L004,-101,Cycle,Base Insertion,24484,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-101,Cycle,Base Deletion,24484,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-102,Cycle,Base Substitution,24832,45.07,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L004,-102,Cycle,Base Insertion,24563,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-102,Cycle,Base Deletion,24563,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-103,Cycle,Base Substitution,24797,39.57,29.00,29.94,-0.94,Before
REGRESSION.HCC1395_tumor.L004,-103,Cycle,Base Insertion,24502,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-103,Cycle,Base Deletion,24502,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-104,Cycle,Base Substitution,24585,47.00,28.00,29.82,-1.82,Before
REGRESSION.HCC1395_tumor.L004,-104,Cycle,Base Insertion,24304,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-104,Cycle,Base Deletion,24304,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-105,Cycle,Base Substitution,24638,50.86,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L004,-105,Cycle,Base Insertion,24371,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-105,Cycle,Base Deletion,24371,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-106,Cycle,Base Substitution,24551,43.11,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L004,-106,Cycle,Base Insertion,24280,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-106,Cycle,Base Deletion,24280,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-107,Cycle,Base Substitution,24340,46.22,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L004,-107,Cycle,Base Insertion,24088,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-107,Cycle,Base Deletion,24088,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-108,Cycle,Base Substitution,24333,31.75,30.00,30.19,-0.19,Before
REGRESSION.HCC1395_tumor.L004,-108,Cycle,Base Insertion,24082,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-108,Cycle,Base Deletion,24082,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-109,Cycle,Base Substitution,24271,47.46,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L004,-109,Cycle,Base Insertion,24012,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-109,Cycle,Base Deletion,24012,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-11,Cycle,Base Substitution,26818,33.08,30.00,31.42,-1.42,Before
REGRESSION.HCC1395_tumor.L004,-11,Cycle,Base Insertion,26817,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-11,Cycle,Base Deletion,26817,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-110,Cycle,Base Substitution,24213,39.97,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L004,-110,Cycle,Base Insertion,23919,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-110,Cycle,Base Deletion,23919,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-111,Cycle,Base Substitution,24194,53.04,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L004,-111,Cycle,Base Insertion,23906,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-111,Cycle,Base Deletion,23906,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-112,Cycle,Base Substitution,24133,45.22,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L004,-112,Cycle,Base Insertion,23859,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-112,Cycle,Base Deletion,23859,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-113,Cycle,Base Substitution,23963,38.46,29.00,29.82,-0.82,Before
REGRESSION.HCC1395_tumor.L004,-113,Cycle,Base Insertion,23675,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-113,Cycle,Base Deletion,23675,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-114,Cycle,Base Substitution,24037,47.89,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L004,-114,Cycle,Base Insertion,23771,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-114,Cycle,Base Deletion,23771,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-115,Cycle,Base Substitution,23908,48.69,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L004,-115,Cycle,Base Insertion,23629,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-115,Cycle,Base Deletion,23629,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-116,Cycle,Base Substitution,23886,41.52,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L004,-116,Cycle,Base Insertion,23625,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-116,Cycle,Base Deletion,23625,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-117,Cycle,Base Substitution,23693,50.69,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L004,-117,Cycle,Base Insertion,23438,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-117,Cycle,Base Deletion,23438,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-118,Cycle,Base Substitution,23757,53.97,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L004,-118,Cycle,Base Insertion,23510,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-118,Cycle,Base Deletion,23510,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-119,Cycle,Base Substitution,23803,62.40,28.00,29.69,-1.69,Before
REGRESSION.HCC1395_tumor.L004,-119,Cycle,Base Insertion,23552,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-119,Cycle,Base Deletion,23552,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-12,Cycle,Base Substitution,26899,37.39,30.00,31.57,-1.57,Before
REGRESSION.HCC1395_tumor.L004,-12,Cycle,Base Insertion,26898,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-12,Cycle,Base Deletion,26898,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-120,Cycle,Base Substitution,23642,49.29,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L004,-120,Cycle,Base Insertion,23374,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-120,Cycle,Base Deletion,23374,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-121,Cycle,Base Substitution,23501,43.82,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L004,-121,Cycle,Base Insertion,23211,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-121,Cycle,Base Deletion,23211,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-122,Cycle,Base Substitution,23546,49.95,28.00,29.71,-1.71,Before
REGRESSION.HCC1395_tumor.L004,-122,Cycle,Base Insertion,23244,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-122,Cycle,Base Deletion,23244,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-123,Cycle,Base Substitution,23430,49.23,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L004,-123,Cycle,Base Insertion,23096,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-123,Cycle,Base Deletion,23096,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-124,Cycle,Base Substitution,23437,45.93,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L004,-124,Cycle,Base Insertion,23105,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-124,Cycle,Base Deletion,23105,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-125,Cycle,Base Substitution,23258,47.52,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L004,-125,Cycle,Base Insertion,22934,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-125,Cycle,Base Deletion,22934,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-126,Cycle,Base Substitution,23217,46.28,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L004,-126,Cycle,Base Insertion,22886,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-126,Cycle,Base Deletion,22886,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-127,Cycle,Base Substitution,23192,38.04,29.00,29.99,-0.99,Before
REGRESSION.HCC1395_tumor.L004,-127,Cycle,Base Insertion,22869,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-127,Cycle,Base Deletion,22869,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-128,Cycle,Base Substitution,23062,44.64,28.00,29.42,-1.42,Before
REGRESSION.HCC1395_tumor.L004,-128,Cycle,Base Insertion,22750,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-128,Cycle,Base Deletion,22750,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-129,Cycle,Base Substitution,23026,54.52,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L004,-129,Cycle,Base Insertion,22677,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-129,Cycle,Base Deletion,22677,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-13,Cycle,Base Substitution,26862,32.94,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L004,-13,Cycle,Base Insertion,26861,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-13,Cycle,Base Deletion,26861,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-130,Cycle,Base Substitution,22934,43.80,28.00,29.61,-1.61,Before
REGRESSION.HCC1395_tumor.L004,-130,Cycle,Base Insertion,22615,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-130,Cycle,Base Deletion,22615,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-131,Cycle,Base Substitution,22782,43.28,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L004,-131,Cycle,Base Insertion,22454,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-131,Cycle,Base Deletion,22454,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-132,Cycle,Base Substitution,22784,43.11,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L004,-132,Cycle,Base Insertion,22451,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-132,Cycle,Base Deletion,22451,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-133,Cycle,Base Substitution,22731,47.23,28.00,29.60,-1.60,Before
REGRESSION.HCC1395_tumor.L004,-133,Cycle,Base Insertion,22411,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-133,Cycle,Base Deletion,22411,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-134,Cycle,Base Substitution,22658,44.65,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L004,-134,Cycle,Base Insertion,22330,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-134,Cycle,Base Deletion,22330,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-135,Cycle,Base Substitution,22584,44.17,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L004,-135,Cycle,Base Insertion,22256,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-135,Cycle,Base Deletion,22256,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-136,Cycle,Base Substitution,22503,41.94,28.00,29.97,-1.97,Before
REGRESSION.HCC1395_tumor.L004,-136,Cycle,Base Insertion,22178,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-136,Cycle,Base Deletion,22178,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-137,Cycle,Base Substitution,22439,44.72,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L004,-137,Cycle,Base Insertion,22092,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-137,Cycle,Base Deletion,22092,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-138,Cycle,Base Substitution,22295,40.93,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L004,-138,Cycle,Base Insertion,21981,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-138,Cycle,Base Deletion,21981,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-139,Cycle,Base Substitution,22293,49.17,28.00,29.60,-1.60,Before
REGRESSION.HCC1395_tumor.L004,-139,Cycle,Base Insertion,21948,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-139,Cycle,Base Deletion,21948,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-14,Cycle,Base Substitution,26783,33.64,30.00,31.80,-1.80,Before
REGRESSION.HCC1395_tumor.L004,-14,Cycle,Base Insertion,26782,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-14,Cycle,Base Deletion,26782,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-140,Cycle,Base Substitution,22143,46.33,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L004,-140,Cycle,Base Insertion,21783,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-140,Cycle,Base Deletion,21783,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-141,Cycle,Base Substitution,22070,46.07,28.00,29.67,-1.67,Before
REGRESSION.HCC1395_tumor.L004,-141,Cycle,Base Insertion,21682,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-141,Cycle,Base Deletion,21682,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-142,Cycle,Base Substitution,22102,43.66,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L004,-142,Cycle,Base Insertion,21686,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-142,Cycle,Base Deletion,21686,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-143,Cycle,Base Substitution,21897,51.72,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L004,-143,Cycle,Base Insertion,21461,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-143,Cycle,Base Deletion,21461,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-144,Cycle,Base Substitution,21859,39.90,28.00,29.82,-1.82,Before
REGRESSION.HCC1395_tumor.L004,-144,Cycle,Base Insertion,21403,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-144,Cycle,Base Deletion,21403,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-145,Cycle,Base Substitution,21888,49.29,28.00,29.79,-1.79,Before
REGRESSION.HCC1395_tumor.L004,-145,Cycle,Base Insertion,16772,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-145,Cycle,Base Deletion,16772,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-146,Cycle,Base Substitution,21767,71.00,27.00,29.76,-2.76,Before
REGRESSION.HCC1395_tumor.L004,-146,Cycle,Base Insertion,16731,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-146,Cycle,Base Deletion,16731,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-147,Cycle,Base Substitution,21631,246.05,22.00,29.93,-7.93,Before
REGRESSION.HCC1395_tumor.L004,-148,Cycle,Base Substitution,21417,852.25,15.00,30.04,-15.04,Before
REGRESSION.HCC1395_tumor.L004,-149,Cycle,Base Substitution,13297,795.11,14.00,30.47,-16.47,Before
REGRESSION.HCC1395_tumor.L004,-15,Cycle,Base Substitution,26856,29.80,31.00,31.70,-0.70,Before
REGRESSION.HCC1395_tumor.L004,-15,Cycle,Base Insertion,26856,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-15,Cycle,Base Deletion,26856,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-150,Cycle,Base Substitution,4639,10.82,29.00,29.64,-0.64,Before
REGRESSION.HCC1395_tumor.L004,-16,Cycle,Base Substitution,26921,37.39,30.00,31.58,-1.58,Before
REGRESSION.HCC1395_tumor.L004,-16,Cycle,Base Insertion,26921,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-16,Cycle,Base Deletion,26921,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-17,Cycle,Base Substitution,26797,37.54,30.00,31.65,-1.65,Before
REGRESSION.HCC1395_tumor.L004,-17,Cycle,Base Insertion,26797,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-17,Cycle,Base Deletion,26797,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-18,Cycle,Base Substitution,26682,38.99,30.00,31.86,-1.86,Before
REGRESSION.HCC1395_tumor.L004,-18,Cycle,Base Insertion,26682,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-18,Cycle,Base Deletion,26682,2.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-19,Cycle,Base Substitution,26748,45.19,30.00,31.41,-1.41,Before
REGRESSION.HCC1395_tumor.L004,-19,Cycle,Base Insertion,26748,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-19,Cycle,Base Deletion,26748,2.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-2,Cycle,Base Substitution,26998,76.79,27.00,28.45,-1.45,Before
REGRESSION.HCC1395_tumor.L004,-20,Cycle,Base Substitution,26760,41.23,31.00,32.11,-1.11,Before
REGRESSION.HCC1395_tumor.L004,-20,Cycle,Base Insertion,26760,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-20,Cycle,Base Deletion,26760,2.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-21,Cycle,Base Substitution,26743,32.45,30.00,31.87,-1.87,Before
REGRESSION.HCC1395_tumor.L004,-21,Cycle,Base Insertion,26743,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-21,Cycle,Base Deletion,26743,3.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-22,Cycle,Base Substitution,26775,36.37,30.00,31.86,-1.86,Before
REGRESSION.HCC1395_tumor.L004,-22,Cycle,Base Insertion,26775,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-22,Cycle,Base Deletion,26775,2.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-23,Cycle,Base Substitution,26820,39.06,30.00,31.52,-1.52,Before
REGRESSION.HCC1395_tumor.L004,-23,Cycle,Base Insertion,26820,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-23,Cycle,Base Deletion,26820,2.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-24,Cycle,Base Substitution,26733,35.99,30.00,31.80,-1.80,Before
REGRESSION.HCC1395_tumor.L004,-24,Cycle,Base Insertion,26733,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-24,Cycle,Base Deletion,26733,2.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-25,Cycle,Base Substitution,26714,31.07,31.00,31.56,-0.56,Before
REGRESSION.HCC1395_tumor.L004,-25,Cycle,Base Insertion,26714,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-25,Cycle,Base Deletion,26714,2.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-26,Cycle,Base Substitution,26705,45.66,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L004,-26,Cycle,Base Insertion,26705,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-26,Cycle,Base Deletion,26705,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-27,Cycle,Base Substitution,26744,30.39,30.00,30.38,-0.38,Before
REGRESSION.HCC1395_tumor.L004,-27,Cycle,Base Insertion,26744,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-27,Cycle,Base Deletion,26744,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-28,Cycle,Base Substitution,26669,40.41,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L004,-28,Cycle,Base Insertion,26668,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-28,Cycle,Base Deletion,26668,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-29,Cycle,Base Substitution,26728,50.43,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L004,-29,Cycle,Base Insertion,26726,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-29,Cycle,Base Deletion,26726,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-3,Cycle,Base Substitution,27022,78.39,27.00,29.82,-2.82,Before
REGRESSION.HCC1395_tumor.L004,-30,Cycle,Base Substitution,26756,40.22,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L004,-30,Cycle,Base Insertion,26754,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-30,Cycle,Base Deletion,26754,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-31,Cycle,Base Substitution,26655,41.59,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L004,-31,Cycle,Base Insertion,26653,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-31,Cycle,Base Deletion,26653,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-32,Cycle,Base Substitution,26779,30.94,30.00,30.47,-0.47,Before
REGRESSION.HCC1395_tumor.L004,-32,Cycle,Base Insertion,26777,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-32,Cycle,Base Deletion,26777,2.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-33,Cycle,Base Substitution,26620,36.50,30.00,30.54,-0.54,Before
REGRESSION.HCC1395_tumor.L004,-33,Cycle,Base Insertion,26618,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-33,Cycle,Base Deletion,26618,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-34,Cycle,Base Substitution,26617,29.92,30.00,30.53,-0.53,Before
REGRESSION.HCC1395_tumor.L004,-34,Cycle,Base Insertion,26616,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-34,Cycle,Base Deletion,26616,2.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-35,Cycle,Base Substitution,26653,36.86,30.00,30.44,-0.44,Before
REGRESSION.HCC1395_tumor.L004,-35,Cycle,Base Insertion,26651,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-35,Cycle,Base Deletion,26651,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-36,Cycle,Base Substitution,26659,38.80,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L004,-36,Cycle,Base Insertion,26658,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-36,Cycle,Base Deletion,26658,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-37,Cycle,Base Substitution,26558,34.58,30.00,30.42,-0.42,Before
REGRESSION.HCC1395_tumor.L004,-37,Cycle,Base Insertion,26557,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-37,Cycle,Base Deletion,26557,1.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-38,Cycle,Base Substitution,26584,37.66,29.00,30.35,-1.35,Before
REGRESSION.HCC1395_tumor.L004,-38,Cycle,Base Insertion,26583,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-38,Cycle,Base Deletion,26583,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-39,Cycle,Base Substitution,26621,43.94,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L004,-39,Cycle,Base Insertion,26620,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-39,Cycle,Base Deletion,26620,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-4,Cycle,Base Substitution,26940,81.06,27.00,29.85,-2.85,Before
REGRESSION.HCC1395_tumor.L004,-40,Cycle,Base Substitution,26589,32.25,30.00,30.70,-0.70,Before
REGRESSION.HCC1395_tumor.L004,-40,Cycle,Base Insertion,26584,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-40,Cycle,Base Deletion,26584,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-41,Cycle,Base Substitution,26517,40.11,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L004,-41,Cycle,Base Insertion,26513,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-41,Cycle,Base Deletion,26513,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-42,Cycle,Base Substitution,26439,48.06,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L004,-42,Cycle,Base Insertion,26436,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-42,Cycle,Base Deletion,26436,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-43,Cycle,Base Substitution,26537,27.61,30.00,30.44,-0.44,Before
REGRESSION.HCC1395_tumor.L004,-43,Cycle,Base Insertion,26533,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-43,Cycle,Base Deletion,26533,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-44,Cycle,Base Substitution,26507,33.01,30.00,30.69,-0.69,Before
REGRESSION.HCC1395_tumor.L004,-44,Cycle,Base Insertion,26504,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-44,Cycle,Base Deletion,26504,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-45,Cycle,Base Substitution,26558,35.21,30.00,30.61,-0.61,Before
REGRESSION.HCC1395_tumor.L004,-45,Cycle,Base Insertion,26555,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-45,Cycle,Base Deletion,26555,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-46,Cycle,Base Substitution,26509,37.74,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L004,-46,Cycle,Base Insertion,26507,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-46,Cycle,Base Deletion,26507,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-47,Cycle,Base Substitution,26440,48.69,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L004,-47,Cycle,Base Insertion,26433,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-47,Cycle,Base Deletion,26433,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-48,Cycle,Base Substitution,26527,44.19,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L004,-48,Cycle,Base Insertion,26521,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-48,Cycle,Base Deletion,26521,1.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-49,Cycle,Base Substitution,26544,39.41,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L004,-49,Cycle,Base Insertion,26537,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-49,Cycle,Base Deletion,26537,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-5,Cycle,Base Substitution,27026,48.27,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L004,-5,Cycle,Base Insertion,27026,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-5,Cycle,Base Deletion,27026,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-50,Cycle,Base Substitution,26523,38.62,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L004,-50,Cycle,Base Insertion,26512,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-50,Cycle,Base Deletion,26512,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-51,Cycle,Base Substitution,26418,43.89,29.00,30.71,-1.71,Before
REGRESSION.HCC1395_tumor.L004,-51,Cycle,Base Insertion,26411,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-51,Cycle,Base Deletion,26411,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-52,Cycle,Base Substitution,26395,35.87,30.00,30.47,-0.47,Before
REGRESSION.HCC1395_tumor.L004,-52,Cycle,Base Insertion,26385,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-52,Cycle,Base Deletion,26385,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-53,Cycle,Base Substitution,26507,29.89,30.00,30.98,-0.98,Before
REGRESSION.HCC1395_tumor.L004,-53,Cycle,Base Insertion,26492,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-53,Cycle,Base Deletion,26492,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-54,Cycle,Base Substitution,26398,42.30,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L004,-54,Cycle,Base Insertion,26376,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-54,Cycle,Base Deletion,26376,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-55,Cycle,Base Substitution,26345,47.60,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L004,-55,Cycle,Base Insertion,26316,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-55,Cycle,Base Deletion,26316,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-56,Cycle,Base Substitution,26449,35.90,30.00,30.53,-0.53,Before
REGRESSION.HCC1395_tumor.L004,-56,Cycle,Base Insertion,26405,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-56,Cycle,Base Deletion,26405,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-57,Cycle,Base Substitution,26373,38.57,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L004,-57,Cycle,Base Insertion,26320,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-57,Cycle,Base Deletion,26320,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-58,Cycle,Base Substitution,26465,34.08,30.00,30.55,-0.55,Before
REGRESSION.HCC1395_tumor.L004,-58,Cycle,Base Insertion,26408,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-58,Cycle,Base Deletion,26408,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-59,Cycle,Base Substitution,26434,50.92,29.00,30.73,-1.73,Before
REGRESSION.HCC1395_tumor.L004,-59,Cycle,Base Insertion,26379,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-59,Cycle,Base Deletion,26379,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-6,Cycle,Base Substitution,26829,47.34,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L004,-6,Cycle,Base Insertion,26829,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-6,Cycle,Base Deletion,26829,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-60,Cycle,Base Substitution,26393,34.57,30.00,30.81,-0.81,Before
REGRESSION.HCC1395_tumor.L004,-60,Cycle,Base Insertion,26340,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-60,Cycle,Base Deletion,26340,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-61,Cycle,Base Substitution,26296,40.05,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L004,-61,Cycle,Base Insertion,26241,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-61,Cycle,Base Deletion,26241,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-62,Cycle,Base Substitution,26391,62.22,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L004,-62,Cycle,Base Insertion,26337,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-62,Cycle,Base Deletion,26337,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-63,Cycle,Base Substitution,26321,41.84,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L004,-63,Cycle,Base Insertion,26260,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-63,Cycle,Base Deletion,26260,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-64,Cycle,Base Substitution,26344,35.71,30.00,30.69,-0.69,Before
REGRESSION.HCC1395_tumor.L004,-64,Cycle,Base Insertion,26281,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-64,Cycle,Base Deletion,26281,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-65,Cycle,Base Substitution,26400,37.56,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L004,-65,Cycle,Base Insertion,26336,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-65,Cycle,Base Deletion,26336,1.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-66,Cycle,Base Substitution,26332,39.34,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L004,-66,Cycle,Base Insertion,26267,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-66,Cycle,Base Deletion,26267,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-67,Cycle,Base Substitution,26268,38.03,29.00,30.59,-1.59,Before
REGRESSION.HCC1395_tumor.L004,-67,Cycle,Base Insertion,26178,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-67,Cycle,Base Deletion,26178,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-68,Cycle,Base Substitution,26243,42.26,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L004,-68,Cycle,Base Insertion,26144,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-68,Cycle,Base Deletion,26144,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-69,Cycle,Base Substitution,26238,46.01,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L004,-69,Cycle,Base Insertion,26136,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-69,Cycle,Base Deletion,26136,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-7,Cycle,Base Substitution,26729,48.80,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L004,-7,Cycle,Base Insertion,26729,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-7,Cycle,Base Deletion,26729,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-70,Cycle,Base Substitution,26222,51.01,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L004,-70,Cycle,Base Insertion,26123,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-70,Cycle,Base Deletion,26123,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-71,Cycle,Base Substitution,26222,46.41,29.00,30.59,-1.59,Before
REGRESSION.HCC1395_tumor.L004,-71,Cycle,Base Insertion,26130,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-71,Cycle,Base Deletion,26130,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-72,Cycle,Base Substitution,26125,39.92,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L004,-72,Cycle,Base Insertion,26019,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-72,Cycle,Base Deletion,26019,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-73,Cycle,Base Substitution,26111,35.08,30.00,30.66,-0.66,Before
REGRESSION.HCC1395_tumor.L004,-73,Cycle,Base Insertion,25989,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-73,Cycle,Base Deletion,25989,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-74,Cycle,Base Substitution,26051,37.60,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L004,-74,Cycle,Base Insertion,25909,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-74,Cycle,Base Deletion,25909,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-75,Cycle,Base Substitution,26134,40.30,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L004,-75,Cycle,Base Insertion,25987,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-75,Cycle,Base Deletion,25987,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-76,Cycle,Base Substitution,26086,33.07,30.00,30.73,-0.73,Before
REGRESSION.HCC1395_tumor.L004,-76,Cycle,Base Insertion,25950,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-76,Cycle,Base Deletion,25950,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-77,Cycle,Base Substitution,25864,37.03,29.00,30.61,-1.61,Before
REGRESSION.HCC1395_tumor.L004,-77,Cycle,Base Insertion,25728,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-77,Cycle,Base Deletion,25728,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-78,Cycle,Base Substitution,25842,42.97,29.00,30.71,-1.71,Before
REGRESSION.HCC1395_tumor.L004,-78,Cycle,Base Insertion,25701,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-78,Cycle,Base Deletion,25701,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-79,Cycle,Base Substitution,25890,35.67,30.00,30.45,-0.45,Before
REGRESSION.HCC1395_tumor.L004,-79,Cycle,Base Insertion,25733,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-79,Cycle,Base Deletion,25733,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-8,Cycle,Base Substitution,26851,47.20,29.00,30.74,-1.74,Before
REGRESSION.HCC1395_tumor.L004,-8,Cycle,Base Insertion,26851,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-8,Cycle,Base Deletion,26851,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-80,Cycle,Base Substitution,25814,37.07,29.00,30.43,-1.43,Before
REGRESSION.HCC1395_tumor.L004,-80,Cycle,Base Insertion,25663,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-80,Cycle,Base Deletion,25663,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-81,Cycle,Base Substitution,25853,41.81,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L004,-81,Cycle,Base Insertion,25689,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-81,Cycle,Base Deletion,25689,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-82,Cycle,Base Substitution,25691,45.67,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L004,-82,Cycle,Base Insertion,25518,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-82,Cycle,Base Deletion,25518,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-83,Cycle,Base Substitution,25709,41.73,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L004,-83,Cycle,Base Insertion,25546,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-83,Cycle,Base Deletion,25546,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-84,Cycle,Base Substitution,25666,47.08,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L004,-84,Cycle,Base Insertion,25491,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-84,Cycle,Base Deletion,25491,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-85,Cycle,Base Substitution,25675,35.99,30.00,30.75,-0.75,Before
REGRESSION.HCC1395_tumor.L004,-85,Cycle,Base Insertion,25491,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-85,Cycle,Base Deletion,25491,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-86,Cycle,Base Substitution,25647,46.93,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L004,-86,Cycle,Base Insertion,25460,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-86,Cycle,Base Deletion,25460,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-87,Cycle,Base Substitution,25540,36.64,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L004,-87,Cycle,Base Insertion,25342,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-87,Cycle,Base Deletion,25342,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-88,Cycle,Base Substitution,25476,47.17,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L004,-88,Cycle,Base Insertion,25276,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-88,Cycle,Base Deletion,25276,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-89,Cycle,Base Substitution,25483,47.20,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L004,-89,Cycle,Base Insertion,25278,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-89,Cycle,Base Deletion,25278,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-9,Cycle,Base Substitution,26953,40.91,30.00,31.16,-1.16,Before
REGRESSION.HCC1395_tumor.L004,-9,Cycle,Base Insertion,26953,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-9,Cycle,Base Deletion,26953,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-90,Cycle,Base Substitution,25384,39.37,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L004,-90,Cycle,Base Insertion,25169,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-90,Cycle,Base Deletion,25169,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-91,Cycle,Base Substitution,25347,30.44,30.00,30.80,-0.80,Before
REGRESSION.HCC1395_tumor.L004,-91,Cycle,Base Insertion,25149,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-91,Cycle,Base Deletion,25149,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-92,Cycle,Base Substitution,25198,53.31,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L004,-92,Cycle,Base Insertion,25011,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-92,Cycle,Base Deletion,25011,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-93,Cycle,Base Substitution,25241,44.15,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L004,-93,Cycle,Base Insertion,25044,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-93,Cycle,Base Deletion,25044,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-94,Cycle,Base Substitution,25227,57.13,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L004,-94,Cycle,Base Insertion,25041,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-94,Cycle,Base Deletion,25041,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-95,Cycle,Base Substitution,25160,48.28,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L004,-95,Cycle,Base Insertion,24939,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-95,Cycle,Base Deletion,24939,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-96,Cycle,Base Substitution,25123,42.69,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L004,-96,Cycle,Base Insertion,24887,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-96,Cycle,Base Deletion,24887,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-97,Cycle,Base Substitution,24965,51.74,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L004,-97,Cycle,Base Insertion,24734,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-97,Cycle,Base Deletion,24734,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-98,Cycle,Base Substitution,24873,52.55,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L004,-98,Cycle,Base Insertion,24630,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-98,Cycle,Base Deletion,24630,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-99,Cycle,Base Substitution,24974,41.90,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L004,-99,Cycle,Base Insertion,24748,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,-99,Cycle,Base Deletion,24748,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,1,Cycle,Base Substitution,26576,51.31,28.00,28.78,-0.78,Before
REGRESSION.HCC1395_tumor.L004,10,Cycle,Base Substitution,26832,33.25,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L004,10,Cycle,Base Insertion,26832,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,10,Cycle,Base Deletion,26832,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,100,Cycle,Base Substitution,24839,37.53,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L004,100,Cycle,Base Insertion,24607,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,100,Cycle,Base Deletion,24607,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,101,Cycle,Base Substitution,24763,44.01,29.00,30.59,-1.59,Before
REGRESSION.HCC1395_tumor.L004,101,Cycle,Base Insertion,24512,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,101,Cycle,Base Deletion,24512,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,102,Cycle,Base Substitution,24579,38.23,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L004,102,Cycle,Base Insertion,24307,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,102,Cycle,Base Deletion,24307,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,103,Cycle,Base Substitution,24578,32.92,30.00,30.56,-0.56,Before
REGRESSION.HCC1395_tumor.L004,103,Cycle,Base Insertion,24292,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,103,Cycle,Base Deletion,24292,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,104,Cycle,Base Substitution,24565,38.30,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L004,104,Cycle,Base Insertion,24291,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,104,Cycle,Base Deletion,24291,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,105,Cycle,Base Substitution,24382,43.30,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L004,105,Cycle,Base Insertion,24122,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,105,Cycle,Base Deletion,24122,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,106,Cycle,Base Substitution,24385,48.92,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L004,106,Cycle,Base Insertion,24138,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,106,Cycle,Base Deletion,24138,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,107,Cycle,Base Substitution,24352,53.21,29.00,30.35,-1.35,Before
REGRESSION.HCC1395_tumor.L004,107,Cycle,Base Insertion,24095,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,107,Cycle,Base Deletion,24095,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,108,Cycle,Base Substitution,24172,56.43,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L004,108,Cycle,Base Insertion,23914,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,108,Cycle,Base Deletion,23914,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,109,Cycle,Base Substitution,24244,33.40,30.00,30.43,-0.43,Before
REGRESSION.HCC1395_tumor.L004,109,Cycle,Base Insertion,23985,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,109,Cycle,Base Deletion,23985,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,11,Cycle,Base Substitution,26908,32.82,30.00,31.34,-1.34,Before
REGRESSION.HCC1395_tumor.L004,11,Cycle,Base Insertion,26908,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,11,Cycle,Base Deletion,26908,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,110,Cycle,Base Substitution,24157,41.99,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L004,110,Cycle,Base Insertion,23863,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,110,Cycle,Base Deletion,23863,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,111,Cycle,Base Substitution,24044,45.14,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L004,111,Cycle,Base Insertion,23758,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,111,Cycle,Base Deletion,23758,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,112,Cycle,Base Substitution,23919,33.14,30.00,30.40,-0.40,Before
REGRESSION.HCC1395_tumor.L004,112,Cycle,Base Insertion,23644,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,112,Cycle,Base Deletion,23644,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,113,Cycle,Base Substitution,23975,37.73,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L004,113,Cycle,Base Insertion,23677,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,113,Cycle,Base Deletion,23677,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,114,Cycle,Base Substitution,23949,36.68,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L004,114,Cycle,Base Insertion,23669,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,114,Cycle,Base Deletion,23669,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,115,Cycle,Base Substitution,23848,42.17,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L004,115,Cycle,Base Insertion,23581,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,115,Cycle,Base Deletion,23581,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,116,Cycle,Base Substitution,23794,41.50,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L004,116,Cycle,Base Insertion,23534,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,116,Cycle,Base Deletion,23534,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,117,Cycle,Base Substitution,23679,49.76,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L004,117,Cycle,Base Insertion,23421,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,117,Cycle,Base Deletion,23421,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,118,Cycle,Base Substitution,23634,44.02,29.00,30.43,-1.43,Before
REGRESSION.HCC1395_tumor.L004,118,Cycle,Base Insertion,23384,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,118,Cycle,Base Deletion,23384,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,119,Cycle,Base Substitution,23550,54.35,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L004,119,Cycle,Base Insertion,23305,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,119,Cycle,Base Deletion,23305,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,12,Cycle,Base Substitution,26720,32.80,30.00,31.18,-1.18,Before
REGRESSION.HCC1395_tumor.L004,12,Cycle,Base Insertion,26720,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,12,Cycle,Base Deletion,26720,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,120,Cycle,Base Substitution,23575,37.25,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L004,120,Cycle,Base Insertion,23303,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,120,Cycle,Base Deletion,23303,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,121,Cycle,Base Substitution,23414,33.70,30.00,30.30,-0.30,Before
REGRESSION.HCC1395_tumor.L004,121,Cycle,Base Insertion,23126,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,121,Cycle,Base Deletion,23126,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,122,Cycle,Base Substitution,23303,51.17,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L004,122,Cycle,Base Insertion,22993,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,122,Cycle,Base Deletion,22993,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,123,Cycle,Base Substitution,23363,40.78,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L004,123,Cycle,Base Insertion,23049,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,123,Cycle,Base Deletion,23049,1.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,124,Cycle,Base Substitution,23348,49.57,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L004,124,Cycle,Base Insertion,23021,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,124,Cycle,Base Deletion,23021,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,125,Cycle,Base Substitution,23333,43.05,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L004,125,Cycle,Base Insertion,23015,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,125,Cycle,Base Deletion,23015,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,126,Cycle,Base Substitution,23187,51.96,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L004,126,Cycle,Base Insertion,22868,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,126,Cycle,Base Deletion,22868,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,127,Cycle,Base Substitution,23146,45.22,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L004,127,Cycle,Base Insertion,22842,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,127,Cycle,Base Deletion,22842,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,128,Cycle,Base Substitution,23122,38.52,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L004,128,Cycle,Base Insertion,22810,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,128,Cycle,Base Deletion,22810,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,129,Cycle,Base Substitution,22926,38.76,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L004,129,Cycle,Base Insertion,22613,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,129,Cycle,Base Deletion,22613,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,13,Cycle,Base Substitution,26790,35.65,30.00,31.49,-1.49,Before
REGRESSION.HCC1395_tumor.L004,13,Cycle,Base Insertion,26790,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,13,Cycle,Base Deletion,26790,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,130,Cycle,Base Substitution,22934,42.98,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L004,130,Cycle,Base Insertion,22619,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,130,Cycle,Base Deletion,22619,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,131,Cycle,Base Substitution,22705,45.05,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L004,131,Cycle,Base Insertion,22378,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,131,Cycle,Base Deletion,22378,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,132,Cycle,Base Substitution,22684,38.95,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L004,132,Cycle,Base Insertion,22354,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,132,Cycle,Base Deletion,22354,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,133,Cycle,Base Substitution,22641,41.79,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L004,133,Cycle,Base Insertion,22329,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,133,Cycle,Base Deletion,22329,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,134,Cycle,Base Substitution,22602,35.91,29.00,29.97,-0.97,Before
REGRESSION.HCC1395_tumor.L004,134,Cycle,Base Insertion,22270,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,134,Cycle,Base Deletion,22270,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,135,Cycle,Base Substitution,22469,49.56,28.00,29.97,-1.97,Before
REGRESSION.HCC1395_tumor.L004,135,Cycle,Base Insertion,22145,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,135,Cycle,Base Deletion,22145,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,136,Cycle,Base Substitution,22495,37.45,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L004,136,Cycle,Base Insertion,22165,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,136,Cycle,Base Deletion,22165,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,137,Cycle,Base Substitution,22434,39.14,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L004,137,Cycle,Base Insertion,22105,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,137,Cycle,Base Deletion,22105,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,138,Cycle,Base Substitution,22274,44.93,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L004,138,Cycle,Base Insertion,21962,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,138,Cycle,Base Deletion,21962,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,139,Cycle,Base Substitution,22287,51.24,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L004,139,Cycle,Base Insertion,21969,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,139,Cycle,Base Deletion,21969,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,14,Cycle,Base Substitution,26788,38.54,30.00,31.62,-1.62,Before
REGRESSION.HCC1395_tumor.L004,14,Cycle,Base Insertion,26788,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,14,Cycle,Base Deletion,26788,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,140,Cycle,Base Substitution,22189,47.69,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L004,140,Cycle,Base Insertion,21877,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,140,Cycle,Base Deletion,21877,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,141,Cycle,Base Substitution,22151,42.80,28.00,29.79,-1.79,Before
REGRESSION.HCC1395_tumor.L004,141,Cycle,Base Insertion,21826,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,141,Cycle,Base Deletion,21826,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,142,Cycle,Base Substitution,22000,40.76,28.00,29.97,-1.97,Before
REGRESSION.HCC1395_tumor.L004,142,Cycle,Base Insertion,21641,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,142,Cycle,Base Deletion,21641,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,143,Cycle,Base Substitution,21940,40.24,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L004,143,Cycle,Base Insertion,21610,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,143,Cycle,Base Deletion,21610,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,144,Cycle,Base Substitution,21909,30.07,30.00,30.17,-0.17,Before
REGRESSION.HCC1395_tumor.L004,144,Cycle,Base Insertion,21582,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,144,Cycle,Base Deletion,21582,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,145,Cycle,Base Substitution,21789,37.28,29.00,29.66,-0.66,Before
REGRESSION.HCC1395_tumor.L004,145,Cycle,Base Insertion,21473,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,145,Cycle,Base Deletion,21473,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,146,Cycle,Base Substitution,21706,36.85,29.00,29.86,-0.86,Before
REGRESSION.HCC1395_tumor.L004,146,Cycle,Base Insertion,21406,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,146,Cycle,Base Deletion,21406,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,147,Cycle,Base Substitution,21741,47.67,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L004,148,Cycle,Base Substitution,21540,55.10,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L004,149,Cycle,Base Substitution,21523,47.61,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L004,15,Cycle,Base Substitution,26807,34.67,30.00,31.62,-1.62,Before
REGRESSION.HCC1395_tumor.L004,15,Cycle,Base Insertion,26807,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,15,Cycle,Base Deletion,26807,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,150,Cycle,Base Substitution,21415,43.41,28.00,29.47,-1.47,Before
REGRESSION.HCC1395_tumor.L004,16,Cycle,Base Substitution,26902,32.28,31.00,32.96,-1.96,Before
REGRESSION.HCC1395_tumor.L004,16,Cycle,Base Insertion,26902,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,16,Cycle,Base Deletion,26902,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,17,Cycle,Base Substitution,26808,21.58,32.00,32.69,-0.69,Before
REGRESSION.HCC1395_tumor.L004,17,Cycle,Base Insertion,26808,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,17,Cycle,Base Deletion,26808,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,18,Cycle,Base Substitution,26833,19.16,33.00,33.37,-0.37,Before
REGRESSION.HCC1395_tumor.L004,18,Cycle,Base Insertion,26833,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,18,Cycle,Base Deletion,26833,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,19,Cycle,Base Substitution,26745,18.01,32.00,32.99,-0.99,Before
REGRESSION.HCC1395_tumor.L004,19,Cycle,Base Insertion,26745,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,19,Cycle,Base Deletion,26745,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,2,Cycle,Base Substitution,27055,54.82,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L004,20,Cycle,Base Substitution,26756,23.24,32.00,33.18,-1.18,Before
REGRESSION.HCC1395_tumor.L004,20,Cycle,Base Insertion,26756,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,20,Cycle,Base Deletion,26756,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,21,Cycle,Base Substitution,26796,26.37,32.00,32.96,-0.96,Before
REGRESSION.HCC1395_tumor.L004,21,Cycle,Base Insertion,26796,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,21,Cycle,Base Deletion,26796,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,22,Cycle,Base Substitution,26751,20.46,33.00,33.46,-0.46,Before
REGRESSION.HCC1395_tumor.L004,22,Cycle,Base Insertion,26751,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,22,Cycle,Base Deletion,26751,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,23,Cycle,Base Substitution,26744,22.85,32.00,33.17,-1.17,Before
REGRESSION.HCC1395_tumor.L004,23,Cycle,Base Insertion,26744,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,23,Cycle,Base Deletion,26744,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,24,Cycle,Base Substitution,26725,25.62,32.00,33.34,-1.34,Before
REGRESSION.HCC1395_tumor.L004,24,Cycle,Base Insertion,26725,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,24,Cycle,Base Deletion,26725,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,25,Cycle,Base Substitution,26668,23.11,32.00,33.26,-1.26,Before
REGRESSION.HCC1395_tumor.L004,25,Cycle,Base Insertion,26668,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,25,Cycle,Base Deletion,26668,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,26,Cycle,Base Substitution,26786,32.54,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L004,26,Cycle,Base Insertion,26785,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,26,Cycle,Base Deletion,26785,1.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,27,Cycle,Base Substitution,26686,35.13,30.00,31.09,-1.09,Before
REGRESSION.HCC1395_tumor.L004,27,Cycle,Base Insertion,26685,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,27,Cycle,Base Deletion,26685,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,28,Cycle,Base Substitution,26640,28.51,31.00,31.57,-0.57,Before
REGRESSION.HCC1395_tumor.L004,28,Cycle,Base Insertion,26639,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,28,Cycle,Base Deletion,26639,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,29,Cycle,Base Substitution,26690,26.76,31.00,31.65,-0.65,Before
REGRESSION.HCC1395_tumor.L004,29,Cycle,Base Insertion,26690,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,29,Cycle,Base Deletion,26690,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,3,Cycle,Base Substitution,26974,56.69,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L004,30,Cycle,Base Substitution,26550,33.19,30.00,31.82,-1.82,Before
REGRESSION.HCC1395_tumor.L004,30,Cycle,Base Insertion,26549,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,30,Cycle,Base Deletion,26549,2.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,31,Cycle,Base Substitution,26641,27.65,31.00,31.89,-0.89,Before
REGRESSION.HCC1395_tumor.L004,31,Cycle,Base Insertion,26640,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,31,Cycle,Base Deletion,26640,2.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,32,Cycle,Base Substitution,26676,41.05,30.00,31.52,-1.52,Before
REGRESSION.HCC1395_tumor.L004,32,Cycle,Base Insertion,26675,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,32,Cycle,Base Deletion,26675,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,33,Cycle,Base Substitution,26592,25.45,31.00,31.62,-0.62,Before
REGRESSION.HCC1395_tumor.L004,33,Cycle,Base Insertion,26592,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,33,Cycle,Base Deletion,26592,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,34,Cycle,Base Substitution,26569,26.74,31.00,31.74,-0.74,Before
REGRESSION.HCC1395_tumor.L004,34,Cycle,Base Insertion,26569,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,34,Cycle,Base Deletion,26569,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,35,Cycle,Base Substitution,26460,32.32,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L004,35,Cycle,Base Insertion,26460,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,35,Cycle,Base Deletion,26460,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,36,Cycle,Base Substitution,26587,30.75,31.00,32.14,-1.14,Before
REGRESSION.HCC1395_tumor.L004,36,Cycle,Base Insertion,26587,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,36,Cycle,Base Deletion,26587,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,37,Cycle,Base Substitution,26615,34.59,30.00,31.59,-1.59,Before
REGRESSION.HCC1395_tumor.L004,37,Cycle,Base Insertion,26613,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,37,Cycle,Base Deletion,26613,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,38,Cycle,Base Substitution,26612,35.17,30.00,31.74,-1.74,Before
REGRESSION.HCC1395_tumor.L004,38,Cycle,Base Insertion,26611,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,38,Cycle,Base Deletion,26611,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,39,Cycle,Base Substitution,26541,33.29,30.00,31.42,-1.42,Before
REGRESSION.HCC1395_tumor.L004,39,Cycle,Base Insertion,26539,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,39,Cycle,Base Deletion,26539,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,4,Cycle,Base Substitution,26832,54.72,30.00,31.34,-1.34,Before
REGRESSION.HCC1395_tumor.L004,40,Cycle,Base Substitution,26502,35.01,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L004,40,Cycle,Base Insertion,26499,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,40,Cycle,Base Deletion,26499,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,41,Cycle,Base Substitution,26535,35.32,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L004,41,Cycle,Base Insertion,26532,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,41,Cycle,Base Deletion,26532,3.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,42,Cycle,Base Substitution,26451,21.18,32.00,32.01,-0.01,Before
REGRESSION.HCC1395_tumor.L004,42,Cycle,Base Insertion,26447,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,42,Cycle,Base Deletion,26447,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,43,Cycle,Base Substitution,26546,43.01,30.00,31.73,-1.73,Before
REGRESSION.HCC1395_tumor.L004,43,Cycle,Base Insertion,26544,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,43,Cycle,Base Deletion,26544,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,44,Cycle,Base Substitution,26552,24.29,31.00,31.66,-0.66,Before
REGRESSION.HCC1395_tumor.L004,44,Cycle,Base Insertion,26550,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,44,Cycle,Base Deletion,26550,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,45,Cycle,Base Substitution,26367,42.90,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L004,45,Cycle,Base Insertion,26364,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,45,Cycle,Base Deletion,26364,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,46,Cycle,Base Substitution,26544,29.80,31.00,31.53,-0.53,Before
REGRESSION.HCC1395_tumor.L004,46,Cycle,Base Insertion,26541,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,46,Cycle,Base Deletion,26541,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,47,Cycle,Base Substitution,26414,27.97,31.00,31.78,-0.78,Before
REGRESSION.HCC1395_tumor.L004,47,Cycle,Base Insertion,26409,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,47,Cycle,Base Deletion,26409,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,48,Cycle,Base Substitution,26338,29.75,31.00,31.96,-0.96,Before
REGRESSION.HCC1395_tumor.L004,48,Cycle,Base Insertion,26332,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,48,Cycle,Base Deletion,26332,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,49,Cycle,Base Substitution,26442,31.04,31.00,31.45,-0.45,Before
REGRESSION.HCC1395_tumor.L004,49,Cycle,Base Insertion,26435,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,49,Cycle,Base Deletion,26435,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,5,Cycle,Base Substitution,26946,44.72,30.00,31.16,-1.16,Before
REGRESSION.HCC1395_tumor.L004,5,Cycle,Base Insertion,26946,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,5,Cycle,Base Deletion,26946,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,50,Cycle,Base Substitution,26446,40.93,29.00,30.89,-1.89,Before
REGRESSION.HCC1395_tumor.L004,50,Cycle,Base Insertion,26438,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,50,Cycle,Base Deletion,26438,1.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,51,Cycle,Base Substitution,26459,38.69,30.00,31.42,-1.42,Before
REGRESSION.HCC1395_tumor.L004,51,Cycle,Base Insertion,26450,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,51,Cycle,Base Deletion,26450,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,52,Cycle,Base Substitution,26403,33.36,30.00,31.64,-1.64,Before
REGRESSION.HCC1395_tumor.L004,52,Cycle,Base Insertion,26389,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,52,Cycle,Base Deletion,26389,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,53,Cycle,Base Substitution,26421,36.63,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L004,53,Cycle,Base Insertion,26403,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,53,Cycle,Base Deletion,26403,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,54,Cycle,Base Substitution,26274,25.95,31.00,31.42,-0.42,Before
REGRESSION.HCC1395_tumor.L004,54,Cycle,Base Insertion,26256,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,54,Cycle,Base Deletion,26256,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,55,Cycle,Base Substitution,26367,38.85,30.00,31.48,-1.48,Before
REGRESSION.HCC1395_tumor.L004,55,Cycle,Base Insertion,26337,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,55,Cycle,Base Deletion,26337,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,56,Cycle,Base Substitution,26365,34.31,30.00,31.67,-1.67,Before
REGRESSION.HCC1395_tumor.L004,56,Cycle,Base Insertion,26321,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,56,Cycle,Base Deletion,26321,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,57,Cycle,Base Substitution,26327,46.96,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L004,57,Cycle,Base Insertion,26284,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,57,Cycle,Base Deletion,26284,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,58,Cycle,Base Substitution,26296,32.40,30.00,31.44,-1.44,Before
REGRESSION.HCC1395_tumor.L004,58,Cycle,Base Insertion,26248,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,58,Cycle,Base Deletion,26248,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,59,Cycle,Base Substitution,26285,33.14,30.00,31.71,-1.71,Before
REGRESSION.HCC1395_tumor.L004,59,Cycle,Base Insertion,26234,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,59,Cycle,Base Deletion,26234,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,6,Cycle,Base Substitution,26769,37.62,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L004,6,Cycle,Base Insertion,26769,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,6,Cycle,Base Deletion,26769,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,60,Cycle,Base Substitution,26259,37.58,30.00,31.36,-1.36,Before
REGRESSION.HCC1395_tumor.L004,60,Cycle,Base Insertion,26206,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,60,Cycle,Base Deletion,26206,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,61,Cycle,Base Substitution,26198,29.88,31.00,31.39,-0.39,Before
REGRESSION.HCC1395_tumor.L004,61,Cycle,Base Insertion,26147,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,61,Cycle,Base Deletion,26147,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,62,Cycle,Base Substitution,26206,40.22,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L004,62,Cycle,Base Insertion,26149,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,62,Cycle,Base Deletion,26149,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,63,Cycle,Base Substitution,26135,35.92,30.00,31.23,-1.23,Before
REGRESSION.HCC1395_tumor.L004,63,Cycle,Base Insertion,26079,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,63,Cycle,Base Deletion,26079,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,64,Cycle,Base Substitution,26172,35.30,30.00,31.32,-1.32,Before
REGRESSION.HCC1395_tumor.L004,64,Cycle,Base Insertion,26112,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,64,Cycle,Base Deletion,26112,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,65,Cycle,Base Substitution,26154,50.66,30.00,31.14,-1.14,Before
REGRESSION.HCC1395_tumor.L004,65,Cycle,Base Insertion,26088,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,65,Cycle,Base Deletion,26088,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,66,Cycle,Base Substitution,26072,26.98,31.00,31.49,-0.49,Before
REGRESSION.HCC1395_tumor.L004,66,Cycle,Base Insertion,25991,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,66,Cycle,Base Deletion,25991,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,67,Cycle,Base Substitution,26173,39.80,29.00,30.85,-1.85,Before
REGRESSION.HCC1395_tumor.L004,67,Cycle,Base Insertion,26079,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,67,Cycle,Base Deletion,26079,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,68,Cycle,Base Substitution,26205,31.56,30.00,31.40,-1.40,Before
REGRESSION.HCC1395_tumor.L004,68,Cycle,Base Insertion,26108,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,68,Cycle,Base Deletion,26108,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,69,Cycle,Base Substitution,26140,34.35,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L004,69,Cycle,Base Insertion,26042,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,69,Cycle,Base Deletion,26042,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,7,Cycle,Base Substitution,26830,30.28,31.00,31.79,-0.79,Before
REGRESSION.HCC1395_tumor.L004,7,Cycle,Base Insertion,26830,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,7,Cycle,Base Deletion,26830,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,70,Cycle,Base Substitution,26108,28.02,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L004,70,Cycle,Base Insertion,26014,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,70,Cycle,Base Deletion,26014,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,71,Cycle,Base Substitution,26092,25.54,31.00,31.31,-0.31,Before
REGRESSION.HCC1395_tumor.L004,71,Cycle,Base Insertion,25999,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,71,Cycle,Base Deletion,25999,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,72,Cycle,Base Substitution,25958,35.24,30.00,31.04,-1.04,Before
REGRESSION.HCC1395_tumor.L004,72,Cycle,Base Insertion,25856,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,72,Cycle,Base Deletion,25856,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,73,Cycle,Base Substitution,26020,45.94,30.00,31.13,-1.13,Before
REGRESSION.HCC1395_tumor.L004,73,Cycle,Base Insertion,25901,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,73,Cycle,Base Deletion,25901,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,74,Cycle,Base Substitution,25921,27.99,31.00,31.46,-0.46,Before
REGRESSION.HCC1395_tumor.L004,74,Cycle,Base Insertion,25787,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,74,Cycle,Base Deletion,25787,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,75,Cycle,Base Substitution,25865,29.23,31.00,31.14,-0.14,Before
REGRESSION.HCC1395_tumor.L004,75,Cycle,Base Insertion,25727,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,75,Cycle,Base Deletion,25727,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,76,Cycle,Base Substitution,25935,29.42,31.00,31.15,-0.15,Before
REGRESSION.HCC1395_tumor.L004,76,Cycle,Base Insertion,25807,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,76,Cycle,Base Deletion,25807,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,77,Cycle,Base Substitution,25973,44.05,30.00,31.06,-1.06,Before
REGRESSION.HCC1395_tumor.L004,77,Cycle,Base Insertion,25848,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,77,Cycle,Base Deletion,25848,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,78,Cycle,Base Substitution,25800,32.88,30.00,31.19,-1.19,Before
REGRESSION.HCC1395_tumor.L004,78,Cycle,Base Insertion,25670,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,78,Cycle,Base Deletion,25670,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,79,Cycle,Base Substitution,25841,33.80,30.00,31.12,-1.12,Before
REGRESSION.HCC1395_tumor.L004,79,Cycle,Base Insertion,25685,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,79,Cycle,Base Deletion,25685,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,8,Cycle,Base Substitution,26791,24.00,31.00,31.39,-0.39,Before
REGRESSION.HCC1395_tumor.L004,8,Cycle,Base Insertion,26791,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,8,Cycle,Base Deletion,26791,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,80,Cycle,Base Substitution,25723,39.32,30.00,31.04,-1.04,Before
REGRESSION.HCC1395_tumor.L004,80,Cycle,Base Insertion,25560,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,80,Cycle,Base Deletion,25560,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,81,Cycle,Base Substitution,25627,48.10,30.00,31.01,-1.01,Before
REGRESSION.HCC1395_tumor.L004,81,Cycle,Base Insertion,25463,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,81,Cycle,Base Deletion,25463,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,82,Cycle,Base Substitution,25627,35.02,30.00,30.84,-0.84,Before
REGRESSION.HCC1395_tumor.L004,82,Cycle,Base Insertion,25459,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,82,Cycle,Base Deletion,25459,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,83,Cycle,Base Substitution,25605,46.61,29.00,30.86,-1.86,Before
REGRESSION.HCC1395_tumor.L004,83,Cycle,Base Insertion,25449,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,83,Cycle,Base Deletion,25449,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,84,Cycle,Base Substitution,25562,46.70,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L004,84,Cycle,Base Insertion,25390,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,84,Cycle,Base Deletion,25390,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,85,Cycle,Base Substitution,25507,40.81,29.00,30.80,-1.80,Before
REGRESSION.HCC1395_tumor.L004,85,Cycle,Base Insertion,25328,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,85,Cycle,Base Deletion,25328,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,86,Cycle,Base Substitution,25366,46.71,29.00,30.80,-1.80,Before
REGRESSION.HCC1395_tumor.L004,86,Cycle,Base Insertion,25180,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,86,Cycle,Base Deletion,25180,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,87,Cycle,Base Substitution,25481,37.05,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L004,87,Cycle,Base Insertion,25281,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,87,Cycle,Base Deletion,25281,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,88,Cycle,Base Substitution,25358,35.67,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L004,88,Cycle,Base Insertion,25164,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,88,Cycle,Base Deletion,25164,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,89,Cycle,Base Substitution,25166,37.99,29.00,30.93,-1.93,Before
REGRESSION.HCC1395_tumor.L004,89,Cycle,Base Insertion,24964,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,89,Cycle,Base Deletion,24964,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,9,Cycle,Base Substitution,26929,38.92,30.00,31.11,-1.11,Before
REGRESSION.HCC1395_tumor.L004,9,Cycle,Base Insertion,26929,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,9,Cycle,Base Deletion,26929,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,90,Cycle,Base Substitution,25212,39.04,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L004,90,Cycle,Base Insertion,24999,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,90,Cycle,Base Deletion,24999,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,91,Cycle,Base Substitution,25203,43.08,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L004,91,Cycle,Base Insertion,25010,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,91,Cycle,Base Deletion,25010,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,92,Cycle,Base Substitution,25212,42.17,29.00,30.92,-1.92,Before
REGRESSION.HCC1395_tumor.L004,92,Cycle,Base Insertion,25013,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,92,Cycle,Base Deletion,25013,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,93,Cycle,Base Substitution,25097,31.24,30.00,30.84,-0.84,Before
REGRESSION.HCC1395_tumor.L004,93,Cycle,Base Insertion,24894,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,93,Cycle,Base Deletion,24894,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,94,Cycle,Base Substitution,25174,42.32,30.00,31.01,-1.01,Before
REGRESSION.HCC1395_tumor.L004,94,Cycle,Base Insertion,24989,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,94,Cycle,Base Deletion,24989,2.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,95,Cycle,Base Substitution,25023,42.82,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L004,95,Cycle,Base Insertion,24810,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,95,Cycle,Base Deletion,24810,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,96,Cycle,Base Substitution,24958,38.71,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L004,96,Cycle,Base Insertion,24739,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,96,Cycle,Base Deletion,24739,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,97,Cycle,Base Substitution,24901,36.35,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L004,97,Cycle,Base Insertion,24665,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,97,Cycle,Base Deletion,24665,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,98,Cycle,Base Substitution,24907,32.51,30.00,30.72,-0.72,Before
REGRESSION.HCC1395_tumor.L004,98,Cycle,Base Insertion,24665,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,98,Cycle,Base Deletion,24665,2.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,99,Cycle,Base Substitution,24814,42.45,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L004,99,Cycle,Base Insertion,24585,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,99,Cycle,Base Deletion,24585,1.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,12,QualityScore,Base Substitution,78985,7622.42,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L004,24,QualityScore,Base Substitution,193362,701.35,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L004,40,QualityScore,Base Substitution,7272057,5567.63,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L004,45,QualityScore,Base Insertion,7544404,136.27,47.00,45.00,2.00,Before
REGRESSION.HCC1395_tumor.L004,45,QualityScore,Base Deletion,7544404,376.20,43.00,45.00,-2.00,Before
REGRESSION.HCC1395_tumor.L005,AA,Context,Base Substitution,523431,1295.25,26.00,29.63,-3.63,Before
REGRESSION.HCC1395_tumor.L005,AAA,Context,Base Insertion,176821,21.06,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L005,AAA,Context,Base Deletion,176821,67.85,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L005,AAC,Context,Base Insertion,86095,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AAC,Context,Base Deletion,86095,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AAG,Context,Base Insertion,135153,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AAG,Context,Base Deletion,135153,5.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AAT,Context,Base Insertion,100924,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AAT,Context,Base Deletion,100924,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AC,Context,Base Substitution,358789,1111.58,25.00,28.63,-3.63,Before
REGRESSION.HCC1395_tumor.L005,ACA,Context,Base Insertion,132577,4.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ACA,Context,Base Deletion,132577,9.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ACC,Context,Base Insertion,105249,3.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ACC,Context,Base Deletion,105249,2.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ACG,Context,Base Insertion,20865,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ACG,Context,Base Deletion,20865,2.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ACT,Context,Base Insertion,105603,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ACT,Context,Base Deletion,105603,3.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AG,Context,Base Substitution,565011,550.01,30.00,31.91,-1.91,Before
REGRESSION.HCC1395_tumor.L005,AGA,Context,Base Insertion,152604,2.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AGA,Context,Base Deletion,152604,5.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AGC,Context,Base Insertion,141004,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AGC,Context,Base Deletion,141004,4.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AGG,Context,Base Insertion,165322,6.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AGG,Context,Base Deletion,165322,4.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AGT,Context,Base Insertion,102967,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AGT,Context,Base Deletion,102967,3.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,AT,Context,Base Substitution,369520,501.69,29.00,32.13,-3.13,Before
REGRESSION.HCC1395_tumor.L005,ATA,Context,Base Insertion,74258,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ATA,Context,Base Deletion,74258,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ATC,Context,Base Insertion,79821,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ATC,Context,Base Deletion,79821,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ATG,Context,Base Insertion,114821,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ATG,Context,Base Deletion,114821,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ATT,Context,Base Insertion,107955,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,ATT,Context,Base Deletion,107955,2.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CA,Context,Base Substitution,597431,1275.79,27.00,29.93,-2.93,Before
REGRESSION.HCC1395_tumor.L005,CAA,Context,Base Insertion,112818,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CAA,Context,Base Deletion,112818,2.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CAC,Context,Base Insertion,126040,7.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CAC,Context,Base Deletion,126040,8.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CAG,Context,Base Insertion,214637,5.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CAG,Context,Base Deletion,214637,10.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CAT,Context,Base Insertion,111574,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CAT,Context,Base Deletion,111574,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CC,Context,Base Substitution,558146,1838.95,25.00,28.88,-3.88,Before
REGRESSION.HCC1395_tumor.L005,CCA,Context,Base Insertion,178102,2.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CCA,Context,Base Deletion,178102,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CCC,Context,Base Insertion,154208,6.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CCC,Context,Base Deletion,154208,5.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CCG,Context,Base Insertion,37618,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CCG,Context,Base Deletion,37618,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CCT,Context,Base Insertion,179770,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CCT,Context,Base Deletion,179770,4.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CG,Context,Base Substitution,114556,368.88,26.00,29.61,-3.61,Before
REGRESSION.HCC1395_tumor.L005,CGA,Context,Base Insertion,44716,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CGA,Context,Base Deletion,44716,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CGC,Context,Base Insertion,64593,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CGC,Context,Base Deletion,64593,3.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CGG,Context,Base Insertion,77479,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CGG,Context,Base Deletion,77479,3.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CGT,Context,Base Insertion,49219,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CGT,Context,Base Deletion,49219,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CT,Context,Base Substitution,601914,469.54,31.00,32.45,-1.45,Before
REGRESSION.HCC1395_tumor.L005,CTA,Context,Base Insertion,59080,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CTA,Context,Base Deletion,59080,2.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CTC,Context,Base Insertion,147343,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CTC,Context,Base Deletion,147343,6.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CTG,Context,Base Insertion,216569,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CTG,Context,Base Deletion,216569,4.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CTT,Context,Base Insertion,146282,4.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,CTT,Context,Base Deletion,146282,4.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GA,Context,Base Substitution,498557,870.12,28.00,29.52,-1.52,Before
REGRESSION.HCC1395_tumor.L005,GAA,Context,Base Insertion,141546,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GAA,Context,Base Deletion,141546,3.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GAC,Context,Base Insertion,84030,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GAC,Context,Base Deletion,84030,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GAG,Context,Base Insertion,151091,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GAG,Context,Base Deletion,151091,3.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GAT,Context,Base Insertion,83982,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GAT,Context,Base Deletion,83982,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GC,Context,Base Substitution,492917,1154.63,27.00,30.14,-3.14,Before
REGRESSION.HCC1395_tumor.L005,GCA,Context,Base Insertion,149802,2.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GCA,Context,Base Deletion,149802,3.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GCC,Context,Base Insertion,148544,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GCC,Context,Base Deletion,148544,4.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GCG,Context,Base Insertion,36478,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GCG,Context,Base Deletion,36478,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GCT,Context,Base Insertion,157471,2.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GCT,Context,Base Deletion,157471,2.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GG,Context,Base Substitution,582896,780.31,29.00,31.71,-2.71,Before
REGRESSION.HCC1395_tumor.L005,GGA,Context,Base Insertion,157618,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GGA,Context,Base Deletion,157618,4.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GGC,Context,Base Insertion,146713,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GGC,Context,Base Deletion,146713,5.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GGG,Context,Base Insertion,160300,5.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GGG,Context,Base Deletion,160300,8.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GGT,Context,Base Insertion,116098,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GGT,Context,Base Deletion,116098,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GT,Context,Base Substitution,410483,716.50,28.00,31.99,-3.99,Before
REGRESSION.HCC1395_tumor.L005,GTA,Context,Base Insertion,65946,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GTA,Context,Base Deletion,65946,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GTC,Context,Base Insertion,91595,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GTC,Context,Base Deletion,91595,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GTG,Context,Base Insertion,141450,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GTG,Context,Base Deletion,141450,4.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GTT,Context,Base Insertion,99772,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,GTT,Context,Base Deletion,99772,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TA,Context,Base Substitution,288054,832.09,26.00,29.78,-3.78,Before
REGRESSION.HCC1395_tumor.L005,TAA,Context,Base Insertion,87580,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TAA,Context,Base Deletion,87580,3.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TAC,Context,Base Insertion,60327,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TAC,Context,Base Deletion,60327,3.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TAG,Context,Base Insertion,59892,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TAG,Context,Base Deletion,59892,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TAT,Context,Base Insertion,70322,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TAT,Context,Base Deletion,70322,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TC,Context,Base Substitution,451346,1009.42,27.00,30.53,-3.53,Before
REGRESSION.HCC1395_tumor.L005,TCA,Context,Base Insertion,132219,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TCA,Context,Base Deletion,132219,5.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TCC,Context,Base Insertion,146362,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TCC,Context,Base Deletion,146362,3.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TCG,Context,Base Insertion,18732,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TCG,Context,Base Deletion,18732,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TCT,Context,Base Insertion,154845,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TCT,Context,Base Deletion,154845,5.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TG,Context,Base Substitution,591102,481.20,31.00,31.73,-0.73,Before
REGRESSION.HCC1395_tumor.L005,TGA,Context,Base Insertion,139808,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TGA,Context,Base Deletion,139808,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TGC,Context,Base Insertion,137415,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TGC,Context,Base Deletion,137415,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TGG,Context,Base Insertion,175453,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TGG,Context,Base Deletion,175453,2.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TGT,Context,Base Insertion,139464,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TGT,Context,Base Deletion,139464,4.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TT,Context,Base Substitution,535630,710.65,29.00,32.90,-3.90,Before
REGRESSION.HCC1395_tumor.L005,TTA,Context,Base Insertion,86495,2.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TTA,Context,Base Deletion,86495,2.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TTC,Context,Base Insertion,129813,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TTC,Context,Base Deletion,129813,6.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TTG,Context,Base Insertion,114032,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TTG,Context,Base Deletion,114032,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,TTT,Context,Base Insertion,178039,14.90,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L005,TTT,Context,Base Deletion,178039,51.71,43.00,45.00,-2.00,Before
REGRESSION.HCC1395_tumor.L005,-1,Cycle,Base Substitution,26826,85.95,25.00,25.86,-0.86,Before
REGRESSION.HCC1395_tumor.L005,-10,Cycle,Base Substitution,27071,40.64,30.00,31.24,-1.24,Before
REGRESSION.HCC1395_tumor.L005,-10,Cycle,Base Insertion,27071,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-10,Cycle,Base Deletion,27071,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-100,Cycle,Base Substitution,24881,49.33,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L005,-100,Cycle,Base Insertion,24613,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-100,Cycle,Base Deletion,24613,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-101,Cycle,Base Substitution,24840,66.04,28.00,30.11,-2.11,Before
REGRESSION.HCC1395_tumor.L005,-101,Cycle,Base Insertion,24568,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-101,Cycle,Base Deletion,24568,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-102,Cycle,Base Substitution,24735,46.83,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L005,-102,Cycle,Base Insertion,24465,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-102,Cycle,Base Deletion,24465,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-103,Cycle,Base Substitution,24703,59.16,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L005,-103,Cycle,Base Insertion,24442,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-103,Cycle,Base Deletion,24442,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-104,Cycle,Base Substitution,24601,44.43,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L005,-104,Cycle,Base Insertion,24352,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-104,Cycle,Base Deletion,24352,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-105,Cycle,Base Substitution,24478,44.82,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L005,-105,Cycle,Base Insertion,24227,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-105,Cycle,Base Deletion,24227,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-106,Cycle,Base Substitution,24527,42.88,28.00,29.98,-1.98,Before
REGRESSION.HCC1395_tumor.L005,-106,Cycle,Base Insertion,24278,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-106,Cycle,Base Deletion,24278,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-107,Cycle,Base Substitution,24346,40.98,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L005,-107,Cycle,Base Insertion,24086,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-107,Cycle,Base Deletion,24086,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-108,Cycle,Base Substitution,24360,54.01,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L005,-108,Cycle,Base Insertion,24091,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-108,Cycle,Base Deletion,24091,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-109,Cycle,Base Substitution,24388,44.25,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L005,-109,Cycle,Base Insertion,24128,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-109,Cycle,Base Deletion,24128,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-11,Cycle,Base Substitution,26977,40.01,30.00,31.21,-1.21,Before
REGRESSION.HCC1395_tumor.L005,-11,Cycle,Base Insertion,26977,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-11,Cycle,Base Deletion,26977,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-110,Cycle,Base Substitution,24322,50.43,28.00,29.96,-1.96,Before
REGRESSION.HCC1395_tumor.L005,-110,Cycle,Base Insertion,24046,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-110,Cycle,Base Deletion,24046,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-111,Cycle,Base Substitution,24301,37.60,29.00,29.93,-0.93,Before
REGRESSION.HCC1395_tumor.L005,-111,Cycle,Base Insertion,24027,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-111,Cycle,Base Deletion,24027,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-112,Cycle,Base Substitution,24214,42.25,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L005,-112,Cycle,Base Insertion,23922,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-112,Cycle,Base Deletion,23922,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-113,Cycle,Base Substitution,24089,53.82,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L005,-113,Cycle,Base Insertion,23794,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-113,Cycle,Base Deletion,23794,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-114,Cycle,Base Substitution,23984,53.62,28.00,29.69,-1.69,Before
REGRESSION.HCC1395_tumor.L005,-114,Cycle,Base Insertion,23707,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-114,Cycle,Base Deletion,23707,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-115,Cycle,Base Substitution,23891,59.99,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L005,-115,Cycle,Base Insertion,23590,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-115,Cycle,Base Deletion,23590,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-116,Cycle,Base Substitution,23871,53.29,28.00,29.61,-1.61,Before
REGRESSION.HCC1395_tumor.L005,-116,Cycle,Base Insertion,23575,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-116,Cycle,Base Deletion,23575,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-117,Cycle,Base Substitution,23867,60.60,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L005,-117,Cycle,Base Insertion,23564,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-117,Cycle,Base Deletion,23564,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-118,Cycle,Base Substitution,23775,55.20,28.00,29.70,-1.70,Before
REGRESSION.HCC1395_tumor.L005,-118,Cycle,Base Insertion,23467,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-118,Cycle,Base Deletion,23467,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-119,Cycle,Base Substitution,23716,49.22,28.00,29.79,-1.79,Before
REGRESSION.HCC1395_tumor.L005,-119,Cycle,Base Insertion,23422,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-119,Cycle,Base Deletion,23422,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-12,Cycle,Base Substitution,26995,46.96,30.00,31.72,-1.72,Before
REGRESSION.HCC1395_tumor.L005,-12,Cycle,Base Insertion,26995,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-12,Cycle,Base Deletion,26995,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-120,Cycle,Base Substitution,23695,46.67,28.00,29.75,-1.75,Before
REGRESSION.HCC1395_tumor.L005,-120,Cycle,Base Insertion,23393,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-120,Cycle,Base Deletion,23393,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-121,Cycle,Base Substitution,23546,42.78,28.00,29.55,-1.55,Before
REGRESSION.HCC1395_tumor.L005,-121,Cycle,Base Insertion,23252,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-121,Cycle,Base Deletion,23252,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-122,Cycle,Base Substitution,23509,51.77,28.00,29.91,-1.91,Before
REGRESSION.HCC1395_tumor.L005,-122,Cycle,Base Insertion,23217,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-122,Cycle,Base Deletion,23217,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-123,Cycle,Base Substitution,23462,43.09,28.00,29.50,-1.50,Before
REGRESSION.HCC1395_tumor.L005,-123,Cycle,Base Insertion,23156,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-123,Cycle,Base Deletion,23156,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-124,Cycle,Base Substitution,23367,64.31,28.00,29.73,-1.73,Before
REGRESSION.HCC1395_tumor.L005,-124,Cycle,Base Insertion,23061,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-124,Cycle,Base Deletion,23061,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-125,Cycle,Base Substitution,23389,48.34,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L005,-125,Cycle,Base Insertion,23084,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-125,Cycle,Base Deletion,23084,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-126,Cycle,Base Substitution,23228,37.19,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L005,-126,Cycle,Base Insertion,22932,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-126,Cycle,Base Deletion,22932,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-127,Cycle,Base Substitution,23114,33.97,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L005,-127,Cycle,Base Insertion,22796,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-127,Cycle,Base Deletion,22796,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-128,Cycle,Base Substitution,23090,51.24,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L005,-128,Cycle,Base Insertion,22759,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-128,Cycle,Base Deletion,22759,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-129,Cycle,Base Substitution,23059,44.91,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L005,-129,Cycle,Base Insertion,22736,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-129,Cycle,Base Deletion,22736,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-13,Cycle,Base Substitution,26975,47.22,30.00,31.41,-1.41,Before
REGRESSION.HCC1395_tumor.L005,-13,Cycle,Base Insertion,26975,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-13,Cycle,Base Deletion,26975,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-130,Cycle,Base Substitution,22908,45.96,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L005,-130,Cycle,Base Insertion,22586,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-130,Cycle,Base Deletion,22586,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-131,Cycle,Base Substitution,22917,44.22,28.00,29.49,-1.49,Before
REGRESSION.HCC1395_tumor.L005,-131,Cycle,Base Insertion,22584,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-131,Cycle,Base Deletion,22584,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-132,Cycle,Base Substitution,22813,43.78,28.00,29.67,-1.67,Before
REGRESSION.HCC1395_tumor.L005,-132,Cycle,Base Insertion,22486,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-132,Cycle,Base Deletion,22486,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-133,Cycle,Base Substitution,22757,45.92,28.00,29.42,-1.42,Before
REGRESSION.HCC1395_tumor.L005,-133,Cycle,Base Insertion,22433,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-133,Cycle,Base Deletion,22433,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-134,Cycle,Base Substitution,22739,48.85,28.00,29.66,-1.66,Before
REGRESSION.HCC1395_tumor.L005,-134,Cycle,Base Insertion,22405,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-134,Cycle,Base Deletion,22405,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-135,Cycle,Base Substitution,22529,53.08,28.00,29.66,-1.66,Before
REGRESSION.HCC1395_tumor.L005,-135,Cycle,Base Insertion,22196,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-135,Cycle,Base Deletion,22196,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-136,Cycle,Base Substitution,22536,32.05,30.00,30.03,-0.03,Before
REGRESSION.HCC1395_tumor.L005,-136,Cycle,Base Insertion,22197,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-136,Cycle,Base Deletion,22197,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-137,Cycle,Base Substitution,22377,44.53,28.00,29.48,-1.48,Before
REGRESSION.HCC1395_tumor.L005,-137,Cycle,Base Insertion,22024,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-137,Cycle,Base Deletion,22024,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-138,Cycle,Base Substitution,22353,57.81,28.00,29.43,-1.43,Before
REGRESSION.HCC1395_tumor.L005,-138,Cycle,Base Insertion,21973,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-138,Cycle,Base Deletion,21973,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-139,Cycle,Base Substitution,22352,37.40,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L005,-139,Cycle,Base Insertion,21977,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-139,Cycle,Base Deletion,21977,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-14,Cycle,Base Substitution,27061,39.26,30.00,31.67,-1.67,Before
REGRESSION.HCC1395_tumor.L005,-14,Cycle,Base Insertion,27061,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-14,Cycle,Base Deletion,27061,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-140,Cycle,Base Substitution,22215,37.58,29.00,29.65,-0.65,Before
REGRESSION.HCC1395_tumor.L005,-140,Cycle,Base Insertion,21823,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-140,Cycle,Base Deletion,21823,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-141,Cycle,Base Substitution,22039,32.00,29.00,29.67,-0.67,Before
REGRESSION.HCC1395_tumor.L005,-141,Cycle,Base Insertion,21641,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-141,Cycle,Base Deletion,21641,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-142,Cycle,Base Substitution,21999,32.71,29.00,30.00,-1.00,Before
REGRESSION.HCC1395_tumor.L005,-142,Cycle,Base Insertion,21583,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-142,Cycle,Base Deletion,21583,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-143,Cycle,Base Substitution,21918,33.02,29.00,30.00,-1.00,Before
REGRESSION.HCC1395_tumor.L005,-143,Cycle,Base Insertion,21472,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-143,Cycle,Base Deletion,21472,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-144,Cycle,Base Substitution,21798,32.01,30.00,30.32,-0.32,Before
REGRESSION.HCC1395_tumor.L005,-144,Cycle,Base Insertion,21319,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-144,Cycle,Base Deletion,21319,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-145,Cycle,Base Substitution,21819,39.88,28.00,29.84,-1.84,Before
REGRESSION.HCC1395_tumor.L005,-145,Cycle,Base Insertion,16758,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-145,Cycle,Base Deletion,16758,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-146,Cycle,Base Substitution,21700,65.94,28.00,30.29,-2.29,Before
REGRESSION.HCC1395_tumor.L005,-146,Cycle,Base Insertion,16669,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-146,Cycle,Base Deletion,16669,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-147,Cycle,Base Substitution,21619,231.05,23.00,29.89,-6.89,Before
REGRESSION.HCC1395_tumor.L005,-148,Cycle,Base Substitution,21412,869.85,15.00,29.96,-14.96,Before
REGRESSION.HCC1395_tumor.L005,-149,Cycle,Base Substitution,13338,797.36,14.00,30.90,-16.90,Before
REGRESSION.HCC1395_tumor.L005,-15,Cycle,Base Substitution,27101,27.44,31.00,31.72,-0.72,Before
REGRESSION.HCC1395_tumor.L005,-15,Cycle,Base Insertion,27101,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-15,Cycle,Base Deletion,27101,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-150,Cycle,Base Substitution,4697,6.44,30.00,30.41,-0.41,Before
REGRESSION.HCC1395_tumor.L005,-16,Cycle,Base Substitution,27012,34.24,30.00,31.69,-1.69,Before
REGRESSION.HCC1395_tumor.L005,-16,Cycle,Base Insertion,27012,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-16,Cycle,Base Deletion,27012,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-17,Cycle,Base Substitution,27003,33.90,30.00,31.65,-1.65,Before
REGRESSION.HCC1395_tumor.L005,-17,Cycle,Base Insertion,27003,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-17,Cycle,Base Deletion,27003,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-18,Cycle,Base Substitution,27017,30.56,31.00,31.90,-0.90,Before
REGRESSION.HCC1395_tumor.L005,-18,Cycle,Base Insertion,27017,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-18,Cycle,Base Deletion,27017,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-19,Cycle,Base Substitution,26910,41.76,30.00,31.75,-1.75,Before
REGRESSION.HCC1395_tumor.L005,-19,Cycle,Base Insertion,26910,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-19,Cycle,Base Deletion,26910,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-2,Cycle,Base Substitution,27240,77.86,27.00,28.71,-1.71,Before
REGRESSION.HCC1395_tumor.L005,-20,Cycle,Base Substitution,26963,29.12,31.00,31.74,-0.74,Before
REGRESSION.HCC1395_tumor.L005,-20,Cycle,Base Insertion,26963,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-20,Cycle,Base Deletion,26963,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-21,Cycle,Base Substitution,26921,37.62,30.00,31.78,-1.78,Before
REGRESSION.HCC1395_tumor.L005,-21,Cycle,Base Insertion,26921,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-21,Cycle,Base Deletion,26921,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-22,Cycle,Base Substitution,26958,32.64,30.00,31.58,-1.58,Before
REGRESSION.HCC1395_tumor.L005,-22,Cycle,Base Insertion,26958,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-22,Cycle,Base Deletion,26958,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-23,Cycle,Base Substitution,26904,33.61,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L005,-23,Cycle,Base Insertion,26904,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-23,Cycle,Base Deletion,26904,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-24,Cycle,Base Substitution,26939,40.29,30.00,31.70,-1.70,Before
REGRESSION.HCC1395_tumor.L005,-24,Cycle,Base Insertion,26939,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-24,Cycle,Base Deletion,26939,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-25,Cycle,Base Substitution,26953,38.23,30.00,31.67,-1.67,Before
REGRESSION.HCC1395_tumor.L005,-25,Cycle,Base Insertion,26953,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-25,Cycle,Base Deletion,26953,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-26,Cycle,Base Substitution,26908,52.02,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L005,-26,Cycle,Base Insertion,26908,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-26,Cycle,Base Deletion,26908,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-27,Cycle,Base Substitution,26872,37.68,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L005,-27,Cycle,Base Insertion,26872,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-27,Cycle,Base Deletion,26872,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-28,Cycle,Base Substitution,26920,50.51,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L005,-28,Cycle,Base Insertion,26919,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-28,Cycle,Base Deletion,26919,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-29,Cycle,Base Substitution,26900,40.86,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L005,-29,Cycle,Base Insertion,26898,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-29,Cycle,Base Deletion,26898,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-3,Cycle,Base Substitution,27295,70.50,28.00,29.59,-1.59,Before
REGRESSION.HCC1395_tumor.L005,-30,Cycle,Base Substitution,26918,40.20,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L005,-30,Cycle,Base Insertion,26916,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-30,Cycle,Base Deletion,26916,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-31,Cycle,Base Substitution,26803,45.56,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L005,-31,Cycle,Base Insertion,26801,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-31,Cycle,Base Deletion,26801,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-32,Cycle,Base Substitution,26910,34.24,30.00,30.60,-0.60,Before
REGRESSION.HCC1395_tumor.L005,-32,Cycle,Base Insertion,26909,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-32,Cycle,Base Deletion,26909,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-33,Cycle,Base Substitution,26885,41.80,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L005,-33,Cycle,Base Insertion,26884,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-33,Cycle,Base Deletion,26884,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-34,Cycle,Base Substitution,26927,39.06,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L005,-34,Cycle,Base Insertion,26926,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-34,Cycle,Base Deletion,26926,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-35,Cycle,Base Substitution,26872,50.03,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L005,-35,Cycle,Base Insertion,26870,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-35,Cycle,Base Deletion,26870,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-36,Cycle,Base Substitution,26787,35.44,30.00,30.44,-0.44,Before
REGRESSION.HCC1395_tumor.L005,-36,Cycle,Base Insertion,26785,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-36,Cycle,Base Deletion,26785,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-37,Cycle,Base Substitution,26803,36.19,30.00,30.36,-0.36,Before
REGRESSION.HCC1395_tumor.L005,-37,Cycle,Base Insertion,26802,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-37,Cycle,Base Deletion,26802,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-38,Cycle,Base Substitution,26793,24.93,30.00,30.57,-0.57,Before
REGRESSION.HCC1395_tumor.L005,-38,Cycle,Base Insertion,26792,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-38,Cycle,Base Deletion,26792,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-39,Cycle,Base Substitution,26863,41.55,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L005,-39,Cycle,Base Insertion,26863,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-39,Cycle,Base Deletion,26863,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-4,Cycle,Base Substitution,27148,68.64,28.00,29.66,-1.66,Before
REGRESSION.HCC1395_tumor.L005,-40,Cycle,Base Substitution,26822,44.68,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L005,-40,Cycle,Base Insertion,26821,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-40,Cycle,Base Deletion,26821,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-41,Cycle,Base Substitution,26770,36.09,30.00,30.31,-0.31,Before
REGRESSION.HCC1395_tumor.L005,-41,Cycle,Base Insertion,26769,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-41,Cycle,Base Deletion,26769,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-42,Cycle,Base Substitution,26735,42.56,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L005,-42,Cycle,Base Insertion,26732,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-42,Cycle,Base Deletion,26732,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-43,Cycle,Base Substitution,26733,37.32,30.00,30.59,-0.59,Before
REGRESSION.HCC1395_tumor.L005,-43,Cycle,Base Insertion,26729,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-43,Cycle,Base Deletion,26729,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-44,Cycle,Base Substitution,26629,40.46,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L005,-44,Cycle,Base Insertion,26625,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-44,Cycle,Base Deletion,26625,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-45,Cycle,Base Substitution,26578,43.28,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L005,-45,Cycle,Base Insertion,26573,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-45,Cycle,Base Deletion,26573,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-46,Cycle,Base Substitution,26726,47.03,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L005,-46,Cycle,Base Insertion,26719,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-46,Cycle,Base Deletion,26719,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-47,Cycle,Base Substitution,26684,45.33,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L005,-47,Cycle,Base Insertion,26673,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-47,Cycle,Base Deletion,26673,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-48,Cycle,Base Substitution,26631,42.91,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L005,-48,Cycle,Base Insertion,26616,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-48,Cycle,Base Deletion,26616,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-49,Cycle,Base Substitution,26683,32.64,30.00,30.90,-0.90,Before
REGRESSION.HCC1395_tumor.L005,-49,Cycle,Base Insertion,26665,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-49,Cycle,Base Deletion,26665,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-5,Cycle,Base Substitution,27204,51.12,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L005,-5,Cycle,Base Insertion,27204,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-5,Cycle,Base Deletion,27204,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-50,Cycle,Base Substitution,26688,46.13,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L005,-50,Cycle,Base Insertion,26668,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-50,Cycle,Base Deletion,26668,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-51,Cycle,Base Substitution,26600,38.26,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L005,-51,Cycle,Base Insertion,26580,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-51,Cycle,Base Deletion,26580,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-52,Cycle,Base Substitution,26578,36.43,30.00,30.57,-0.57,Before
REGRESSION.HCC1395_tumor.L005,-52,Cycle,Base Insertion,26549,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-52,Cycle,Base Deletion,26549,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-53,Cycle,Base Substitution,26657,35.22,30.00,30.72,-0.72,Before
REGRESSION.HCC1395_tumor.L005,-53,Cycle,Base Insertion,26625,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-53,Cycle,Base Deletion,26625,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-54,Cycle,Base Substitution,26699,37.21,30.00,30.84,-0.84,Before
REGRESSION.HCC1395_tumor.L005,-54,Cycle,Base Insertion,26659,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-54,Cycle,Base Deletion,26659,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-55,Cycle,Base Substitution,26583,48.79,29.00,30.79,-1.79,Before
REGRESSION.HCC1395_tumor.L005,-55,Cycle,Base Insertion,26546,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-55,Cycle,Base Deletion,26546,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-56,Cycle,Base Substitution,26493,49.16,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L005,-56,Cycle,Base Insertion,26454,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-56,Cycle,Base Deletion,26454,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-57,Cycle,Base Substitution,26611,43.92,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L005,-57,Cycle,Base Insertion,26577,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-57,Cycle,Base Deletion,26577,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-58,Cycle,Base Substitution,26475,43.97,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L005,-58,Cycle,Base Insertion,26435,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-58,Cycle,Base Deletion,26435,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-59,Cycle,Base Substitution,26465,40.98,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L005,-59,Cycle,Base Insertion,26420,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-59,Cycle,Base Deletion,26420,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-6,Cycle,Base Substitution,27127,48.43,29.00,30.75,-1.75,Before
REGRESSION.HCC1395_tumor.L005,-6,Cycle,Base Insertion,27127,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-6,Cycle,Base Deletion,27127,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-60,Cycle,Base Substitution,26510,42.62,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L005,-60,Cycle,Base Insertion,26468,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-60,Cycle,Base Deletion,26468,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-61,Cycle,Base Substitution,26561,41.58,29.00,30.59,-1.59,Before
REGRESSION.HCC1395_tumor.L005,-61,Cycle,Base Insertion,26508,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-61,Cycle,Base Deletion,26508,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-62,Cycle,Base Substitution,26515,43.89,29.00,30.79,-1.79,Before
REGRESSION.HCC1395_tumor.L005,-62,Cycle,Base Insertion,26452,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-62,Cycle,Base Deletion,26452,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-63,Cycle,Base Substitution,26484,41.73,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L005,-63,Cycle,Base Insertion,26417,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-63,Cycle,Base Deletion,26417,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-64,Cycle,Base Substitution,26427,41.25,29.00,30.69,-1.69,Before
REGRESSION.HCC1395_tumor.L005,-64,Cycle,Base Insertion,26368,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-64,Cycle,Base Deletion,26368,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-65,Cycle,Base Substitution,26403,38.66,29.00,30.51,-1.51,Before
REGRESSION.HCC1395_tumor.L005,-65,Cycle,Base Insertion,26345,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-65,Cycle,Base Deletion,26345,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-66,Cycle,Base Substitution,26401,50.53,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L005,-66,Cycle,Base Insertion,26325,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-66,Cycle,Base Deletion,26325,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-67,Cycle,Base Substitution,26481,40.30,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L005,-67,Cycle,Base Insertion,26413,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-67,Cycle,Base Deletion,26413,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-68,Cycle,Base Substitution,26441,38.20,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L005,-68,Cycle,Base Insertion,26352,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-68,Cycle,Base Deletion,26352,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-69,Cycle,Base Substitution,26311,38.93,30.00,31.12,-1.12,Before
REGRESSION.HCC1395_tumor.L005,-69,Cycle,Base Insertion,26227,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-69,Cycle,Base Deletion,26227,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-7,Cycle,Base Substitution,27215,49.63,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L005,-7,Cycle,Base Insertion,27215,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-7,Cycle,Base Deletion,27215,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-70,Cycle,Base Substitution,26369,47.77,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L005,-70,Cycle,Base Insertion,26270,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-70,Cycle,Base Deletion,26270,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-71,Cycle,Base Substitution,26243,49.24,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L005,-71,Cycle,Base Insertion,26139,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-71,Cycle,Base Deletion,26139,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-72,Cycle,Base Substitution,26229,42.06,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L005,-72,Cycle,Base Insertion,26112,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-72,Cycle,Base Deletion,26112,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-73,Cycle,Base Substitution,26161,33.60,30.00,30.67,-0.67,Before
REGRESSION.HCC1395_tumor.L005,-73,Cycle,Base Insertion,26044,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-73,Cycle,Base Deletion,26044,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-74,Cycle,Base Substitution,26203,47.77,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L005,-74,Cycle,Base Insertion,26074,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-74,Cycle,Base Deletion,26074,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-75,Cycle,Base Substitution,26100,41.72,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L005,-75,Cycle,Base Insertion,25979,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-75,Cycle,Base Deletion,25979,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-76,Cycle,Base Substitution,26022,45.27,29.00,30.35,-1.35,Before
REGRESSION.HCC1395_tumor.L005,-76,Cycle,Base Insertion,25899,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-76,Cycle,Base Deletion,25899,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-77,Cycle,Base Substitution,26029,30.66,30.00,30.56,-0.56,Before
REGRESSION.HCC1395_tumor.L005,-77,Cycle,Base Insertion,25899,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-77,Cycle,Base Deletion,25899,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-78,Cycle,Base Substitution,26152,44.40,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L005,-78,Cycle,Base Insertion,26016,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-78,Cycle,Base Deletion,26016,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-79,Cycle,Base Substitution,26159,44.81,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L005,-79,Cycle,Base Insertion,26003,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-79,Cycle,Base Deletion,26003,1.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-8,Cycle,Base Substitution,27087,42.08,29.00,30.79,-1.79,Before
REGRESSION.HCC1395_tumor.L005,-8,Cycle,Base Insertion,27087,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-8,Cycle,Base Deletion,27087,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-80,Cycle,Base Substitution,25968,40.47,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L005,-80,Cycle,Base Insertion,25808,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-80,Cycle,Base Deletion,25808,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-81,Cycle,Base Substitution,25905,38.16,29.00,30.43,-1.43,Before
REGRESSION.HCC1395_tumor.L005,-81,Cycle,Base Insertion,25747,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-81,Cycle,Base Deletion,25747,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-82,Cycle,Base Substitution,25847,52.72,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L005,-82,Cycle,Base Insertion,25671,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-82,Cycle,Base Deletion,25671,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-83,Cycle,Base Substitution,25829,51.01,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L005,-83,Cycle,Base Insertion,25646,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-83,Cycle,Base Deletion,25646,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-84,Cycle,Base Substitution,25666,40.96,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L005,-84,Cycle,Base Insertion,25485,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-84,Cycle,Base Deletion,25485,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-85,Cycle,Base Substitution,25653,48.09,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L005,-85,Cycle,Base Insertion,25454,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-85,Cycle,Base Deletion,25454,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-86,Cycle,Base Substitution,25835,42.72,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L005,-86,Cycle,Base Insertion,25636,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-86,Cycle,Base Deletion,25636,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-87,Cycle,Base Substitution,25726,51.13,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L005,-87,Cycle,Base Insertion,25534,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-87,Cycle,Base Deletion,25534,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-88,Cycle,Base Substitution,25550,41.16,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L005,-88,Cycle,Base Insertion,25345,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-88,Cycle,Base Deletion,25345,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-89,Cycle,Base Substitution,25542,48.19,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L005,-89,Cycle,Base Insertion,25335,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-89,Cycle,Base Deletion,25335,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-9,Cycle,Base Substitution,27015,43.56,29.00,30.99,-1.99,Before
REGRESSION.HCC1395_tumor.L005,-9,Cycle,Base Insertion,27015,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-9,Cycle,Base Deletion,27015,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-90,Cycle,Base Substitution,25475,44.69,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L005,-90,Cycle,Base Insertion,25254,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-90,Cycle,Base Deletion,25254,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-91,Cycle,Base Substitution,25394,53.41,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L005,-91,Cycle,Base Insertion,25154,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-91,Cycle,Base Deletion,25154,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-92,Cycle,Base Substitution,25414,38.45,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L005,-92,Cycle,Base Insertion,25183,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-92,Cycle,Base Deletion,25183,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-93,Cycle,Base Substitution,25362,45.11,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L005,-93,Cycle,Base Insertion,25124,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-93,Cycle,Base Deletion,25124,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-94,Cycle,Base Substitution,25266,59.68,28.00,29.74,-1.74,Before
REGRESSION.HCC1395_tumor.L005,-94,Cycle,Base Insertion,25002,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-94,Cycle,Base Deletion,25002,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-95,Cycle,Base Substitution,25089,43.75,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L005,-95,Cycle,Base Insertion,24845,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-95,Cycle,Base Deletion,24845,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-96,Cycle,Base Substitution,25016,47.98,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L005,-96,Cycle,Base Insertion,24760,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-96,Cycle,Base Deletion,24760,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-97,Cycle,Base Substitution,25040,49.22,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L005,-97,Cycle,Base Insertion,24772,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-97,Cycle,Base Deletion,24772,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-98,Cycle,Base Substitution,24840,44.69,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L005,-98,Cycle,Base Insertion,24578,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-98,Cycle,Base Deletion,24578,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-99,Cycle,Base Substitution,24922,45.32,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L005,-99,Cycle,Base Insertion,24650,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,-99,Cycle,Base Deletion,24650,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,1,Cycle,Base Substitution,26839,64.88,27.00,28.77,-1.77,Before
REGRESSION.HCC1395_tumor.L005,10,Cycle,Base Substitution,27151,28.25,31.00,31.31,-0.31,Before
REGRESSION.HCC1395_tumor.L005,10,Cycle,Base Insertion,27151,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,10,Cycle,Base Deletion,27151,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,100,Cycle,Base Substitution,25021,45.35,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L005,100,Cycle,Base Insertion,24764,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,100,Cycle,Base Deletion,24764,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,101,Cycle,Base Substitution,24937,46.42,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L005,101,Cycle,Base Insertion,24675,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,101,Cycle,Base Deletion,24675,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,102,Cycle,Base Substitution,24881,35.10,30.00,30.48,-0.48,Before
REGRESSION.HCC1395_tumor.L005,102,Cycle,Base Insertion,24614,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,102,Cycle,Base Deletion,24614,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,103,Cycle,Base Substitution,24760,43.10,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L005,103,Cycle,Base Insertion,24498,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,103,Cycle,Base Deletion,24498,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,104,Cycle,Base Substitution,24661,33.78,30.00,30.68,-0.68,Before
REGRESSION.HCC1395_tumor.L005,104,Cycle,Base Insertion,24405,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,104,Cycle,Base Deletion,24405,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,105,Cycle,Base Substitution,24558,30.88,30.00,30.62,-0.62,Before
REGRESSION.HCC1395_tumor.L005,105,Cycle,Base Insertion,24304,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,105,Cycle,Base Deletion,24304,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,106,Cycle,Base Substitution,24603,41.93,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L005,106,Cycle,Base Insertion,24344,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,106,Cycle,Base Deletion,24344,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,107,Cycle,Base Substitution,24596,34.72,30.00,30.35,-0.35,Before
REGRESSION.HCC1395_tumor.L005,107,Cycle,Base Insertion,24355,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,107,Cycle,Base Deletion,24355,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,108,Cycle,Base Substitution,24518,46.68,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L005,108,Cycle,Base Insertion,24250,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,108,Cycle,Base Deletion,24250,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,109,Cycle,Base Substitution,24484,45.31,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L005,109,Cycle,Base Insertion,24220,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,109,Cycle,Base Deletion,24220,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,11,Cycle,Base Substitution,27104,38.45,30.00,31.27,-1.27,Before
REGRESSION.HCC1395_tumor.L005,11,Cycle,Base Insertion,27104,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,11,Cycle,Base Deletion,27104,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,110,Cycle,Base Substitution,24332,47.81,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L005,110,Cycle,Base Insertion,24060,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,110,Cycle,Base Deletion,24060,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,111,Cycle,Base Substitution,24259,43.43,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L005,111,Cycle,Base Insertion,23976,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,111,Cycle,Base Deletion,23976,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,112,Cycle,Base Substitution,24124,45.09,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L005,112,Cycle,Base Insertion,23829,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,112,Cycle,Base Deletion,23829,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,113,Cycle,Base Substitution,24146,43.96,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L005,113,Cycle,Base Insertion,23854,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,113,Cycle,Base Deletion,23854,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,114,Cycle,Base Substitution,24088,45.77,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L005,114,Cycle,Base Insertion,23803,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,114,Cycle,Base Deletion,23803,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,115,Cycle,Base Substitution,24066,34.39,30.00,30.46,-0.46,Before
REGRESSION.HCC1395_tumor.L005,115,Cycle,Base Insertion,23782,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,115,Cycle,Base Deletion,23782,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,116,Cycle,Base Substitution,23919,49.79,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L005,116,Cycle,Base Insertion,23643,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,116,Cycle,Base Deletion,23643,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,117,Cycle,Base Substitution,23857,45.78,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L005,117,Cycle,Base Insertion,23578,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,117,Cycle,Base Deletion,23578,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,118,Cycle,Base Substitution,23757,40.27,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L005,118,Cycle,Base Insertion,23461,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,118,Cycle,Base Deletion,23461,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,119,Cycle,Base Substitution,23748,62.16,28.00,30.06,-2.06,Before
REGRESSION.HCC1395_tumor.L005,119,Cycle,Base Insertion,23477,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,119,Cycle,Base Deletion,23477,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,12,Cycle,Base Substitution,27018,37.57,30.00,31.14,-1.14,Before
REGRESSION.HCC1395_tumor.L005,12,Cycle,Base Insertion,27018,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,12,Cycle,Base Deletion,27018,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,120,Cycle,Base Substitution,23654,46.97,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L005,120,Cycle,Base Insertion,23392,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,120,Cycle,Base Deletion,23392,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,121,Cycle,Base Substitution,23680,41.50,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L005,121,Cycle,Base Insertion,23398,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,121,Cycle,Base Deletion,23398,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,122,Cycle,Base Substitution,23576,48.65,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L005,122,Cycle,Base Insertion,23296,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,122,Cycle,Base Deletion,23296,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,123,Cycle,Base Substitution,23464,43.81,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L005,123,Cycle,Base Insertion,23150,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,123,Cycle,Base Deletion,23150,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,124,Cycle,Base Substitution,23468,50.74,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L005,124,Cycle,Base Insertion,23157,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,124,Cycle,Base Deletion,23157,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,125,Cycle,Base Substitution,23361,34.30,29.00,30.43,-1.43,Before
REGRESSION.HCC1395_tumor.L005,125,Cycle,Base Insertion,23059,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,125,Cycle,Base Deletion,23059,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,126,Cycle,Base Substitution,23329,46.40,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L005,126,Cycle,Base Insertion,23022,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,126,Cycle,Base Deletion,23022,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,127,Cycle,Base Substitution,23310,46.99,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L005,127,Cycle,Base Insertion,22993,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,127,Cycle,Base Deletion,22993,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,128,Cycle,Base Substitution,23211,43.18,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L005,128,Cycle,Base Insertion,22906,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,128,Cycle,Base Deletion,22906,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,129,Cycle,Base Substitution,23166,52.43,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L005,129,Cycle,Base Insertion,22840,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,129,Cycle,Base Deletion,22840,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,13,Cycle,Base Substitution,26960,35.34,30.00,31.09,-1.09,Before
REGRESSION.HCC1395_tumor.L005,13,Cycle,Base Insertion,26960,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,13,Cycle,Base Deletion,26960,2.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,130,Cycle,Base Substitution,22978,40.66,28.00,29.98,-1.98,Before
REGRESSION.HCC1395_tumor.L005,130,Cycle,Base Insertion,22670,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,130,Cycle,Base Deletion,22670,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,131,Cycle,Base Substitution,22903,38.55,29.00,30.01,-1.01,Before
REGRESSION.HCC1395_tumor.L005,131,Cycle,Base Insertion,22598,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,131,Cycle,Base Deletion,22598,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,132,Cycle,Base Substitution,22934,43.88,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L005,132,Cycle,Base Insertion,22627,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,132,Cycle,Base Deletion,22627,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,133,Cycle,Base Substitution,22809,36.57,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L005,133,Cycle,Base Insertion,22501,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,133,Cycle,Base Deletion,22501,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,134,Cycle,Base Substitution,22735,44.52,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L005,134,Cycle,Base Insertion,22411,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,134,Cycle,Base Deletion,22411,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,135,Cycle,Base Substitution,22773,39.45,29.00,29.86,-0.86,Before
REGRESSION.HCC1395_tumor.L005,135,Cycle,Base Insertion,22446,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,135,Cycle,Base Deletion,22446,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,136,Cycle,Base Substitution,22659,38.75,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L005,136,Cycle,Base Insertion,22320,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,136,Cycle,Base Deletion,22320,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,137,Cycle,Base Substitution,22575,39.49,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L005,137,Cycle,Base Insertion,22238,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,137,Cycle,Base Deletion,22238,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,138,Cycle,Base Substitution,22509,41.36,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L005,138,Cycle,Base Insertion,22178,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,138,Cycle,Base Deletion,22178,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,139,Cycle,Base Substitution,22501,49.70,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L005,139,Cycle,Base Insertion,22159,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,139,Cycle,Base Deletion,22159,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,14,Cycle,Base Substitution,27103,35.45,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L005,14,Cycle,Base Insertion,27103,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,14,Cycle,Base Deletion,27103,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,140,Cycle,Base Substitution,22342,46.79,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L005,140,Cycle,Base Insertion,22014,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,140,Cycle,Base Deletion,22014,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,141,Cycle,Base Substitution,22227,53.88,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L005,141,Cycle,Base Insertion,21893,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,141,Cycle,Base Deletion,21893,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,142,Cycle,Base Substitution,22155,48.41,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L005,142,Cycle,Base Insertion,21812,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,142,Cycle,Base Deletion,21812,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,143,Cycle,Base Substitution,22113,38.58,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L005,143,Cycle,Base Insertion,21771,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,143,Cycle,Base Deletion,21771,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,144,Cycle,Base Substitution,21988,46.98,28.00,29.68,-1.68,Before
REGRESSION.HCC1395_tumor.L005,144,Cycle,Base Insertion,21634,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,144,Cycle,Base Deletion,21634,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,145,Cycle,Base Substitution,21929,49.74,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L005,145,Cycle,Base Insertion,21570,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,145,Cycle,Base Deletion,21570,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,146,Cycle,Base Substitution,21865,45.36,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L005,146,Cycle,Base Insertion,21524,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,146,Cycle,Base Deletion,21524,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,147,Cycle,Base Substitution,21761,51.56,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L005,148,Cycle,Base Substitution,21663,35.42,29.00,29.62,-0.62,Before
REGRESSION.HCC1395_tumor.L005,149,Cycle,Base Substitution,21613,43.08,28.00,29.61,-1.61,Before
REGRESSION.HCC1395_tumor.L005,15,Cycle,Base Substitution,27004,36.45,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L005,15,Cycle,Base Insertion,27004,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,15,Cycle,Base Deletion,27004,1.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,150,Cycle,Base Substitution,21542,38.85,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L005,16,Cycle,Base Substitution,27001,22.51,32.00,33.02,-1.02,Before
REGRESSION.HCC1395_tumor.L005,16,Cycle,Base Insertion,27001,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,16,Cycle,Base Deletion,27001,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,17,Cycle,Base Substitution,27085,21.24,33.00,33.16,-0.16,Before
REGRESSION.HCC1395_tumor.L005,17,Cycle,Base Insertion,27085,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,17,Cycle,Base Deletion,27085,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,18,Cycle,Base Substitution,27003,26.75,31.00,32.85,-1.85,Before
REGRESSION.HCC1395_tumor.L005,18,Cycle,Base Insertion,27003,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,18,Cycle,Base Deletion,27003,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,19,Cycle,Base Substitution,27078,19.87,32.00,32.70,-0.70,Before
REGRESSION.HCC1395_tumor.L005,19,Cycle,Base Insertion,27078,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,19,Cycle,Base Deletion,27078,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,2,Cycle,Base Substitution,27222,58.16,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L005,20,Cycle,Base Substitution,27026,23.04,32.00,32.82,-0.82,Before
REGRESSION.HCC1395_tumor.L005,20,Cycle,Base Insertion,27026,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,20,Cycle,Base Deletion,27026,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,21,Cycle,Base Substitution,26948,30.06,32.00,33.10,-1.10,Before
REGRESSION.HCC1395_tumor.L005,21,Cycle,Base Insertion,26948,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,21,Cycle,Base Deletion,26948,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,22,Cycle,Base Substitution,26973,17.00,33.00,33.08,-0.08,Before
REGRESSION.HCC1395_tumor.L005,22,Cycle,Base Insertion,26973,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,22,Cycle,Base Deletion,26973,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,23,Cycle,Base Substitution,26965,29.51,32.00,33.16,-1.16,Before
REGRESSION.HCC1395_tumor.L005,23,Cycle,Base Insertion,26965,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,23,Cycle,Base Deletion,26965,2.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,24,Cycle,Base Substitution,26908,27.23,32.00,33.03,-1.03,Before
REGRESSION.HCC1395_tumor.L005,24,Cycle,Base Insertion,26908,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,24,Cycle,Base Deletion,26908,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,25,Cycle,Base Substitution,26969,18.30,33.00,33.14,-0.14,Before
REGRESSION.HCC1395_tumor.L005,25,Cycle,Base Insertion,26969,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,25,Cycle,Base Deletion,26969,2.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,26,Cycle,Base Substitution,26974,26.42,31.00,31.59,-0.59,Before
REGRESSION.HCC1395_tumor.L005,26,Cycle,Base Insertion,26974,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,26,Cycle,Base Deletion,26974,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,27,Cycle,Base Substitution,26826,29.11,31.00,31.31,-0.31,Before
REGRESSION.HCC1395_tumor.L005,27,Cycle,Base Insertion,26826,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,27,Cycle,Base Deletion,26826,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,28,Cycle,Base Substitution,26888,32.10,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L005,28,Cycle,Base Insertion,26888,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,28,Cycle,Base Deletion,26888,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,29,Cycle,Base Substitution,26857,27.90,31.00,31.91,-0.91,Before
REGRESSION.HCC1395_tumor.L005,29,Cycle,Base Insertion,26857,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,29,Cycle,Base Deletion,26857,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,3,Cycle,Base Substitution,27282,61.68,29.00,31.09,-2.09,Before
REGRESSION.HCC1395_tumor.L005,30,Cycle,Base Substitution,26848,34.46,30.00,31.74,-1.74,Before
REGRESSION.HCC1395_tumor.L005,30,Cycle,Base Insertion,26848,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,30,Cycle,Base Deletion,26848,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,31,Cycle,Base Substitution,26934,33.92,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L005,31,Cycle,Base Insertion,26934,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,31,Cycle,Base Deletion,26934,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,32,Cycle,Base Substitution,26789,42.22,30.00,31.57,-1.57,Before
REGRESSION.HCC1395_tumor.L005,32,Cycle,Base Insertion,26789,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,32,Cycle,Base Deletion,26789,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,33,Cycle,Base Substitution,26776,30.36,31.00,31.80,-0.80,Before
REGRESSION.HCC1395_tumor.L005,33,Cycle,Base Insertion,26776,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,33,Cycle,Base Deletion,26776,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,34,Cycle,Base Substitution,26799,31.25,31.00,31.38,-0.38,Before
REGRESSION.HCC1395_tumor.L005,34,Cycle,Base Insertion,26799,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,34,Cycle,Base Deletion,26799,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,35,Cycle,Base Substitution,26890,24.28,31.00,31.49,-0.49,Before
REGRESSION.HCC1395_tumor.L005,35,Cycle,Base Insertion,26890,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,35,Cycle,Base Deletion,26890,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,36,Cycle,Base Substitution,26905,42.27,30.00,31.19,-1.19,Before
REGRESSION.HCC1395_tumor.L005,36,Cycle,Base Insertion,26904,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,36,Cycle,Base Deletion,26904,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,37,Cycle,Base Substitution,26833,29.80,31.00,32.02,-1.02,Before
REGRESSION.HCC1395_tumor.L005,37,Cycle,Base Insertion,26833,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,37,Cycle,Base Deletion,26833,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,38,Cycle,Base Substitution,26693,39.94,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L005,38,Cycle,Base Insertion,26692,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,38,Cycle,Base Deletion,26692,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,39,Cycle,Base Substitution,26706,26.68,31.00,31.91,-0.91,Before
REGRESSION.HCC1395_tumor.L005,39,Cycle,Base Insertion,26706,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,39,Cycle,Base Deletion,26706,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,4,Cycle,Base Substitution,27177,57.20,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L005,40,Cycle,Base Substitution,26769,27.31,31.00,31.75,-0.75,Before
REGRESSION.HCC1395_tumor.L005,40,Cycle,Base Insertion,26768,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,40,Cycle,Base Deletion,26768,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,41,Cycle,Base Substitution,26713,27.32,31.00,31.67,-0.67,Before
REGRESSION.HCC1395_tumor.L005,41,Cycle,Base Insertion,26711,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,41,Cycle,Base Deletion,26711,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,42,Cycle,Base Substitution,26714,30.55,31.00,31.84,-0.84,Before
REGRESSION.HCC1395_tumor.L005,42,Cycle,Base Insertion,26709,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,42,Cycle,Base Deletion,26709,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,43,Cycle,Base Substitution,26837,32.09,30.00,31.61,-1.61,Before
REGRESSION.HCC1395_tumor.L005,43,Cycle,Base Insertion,26832,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,43,Cycle,Base Deletion,26832,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,44,Cycle,Base Substitution,26726,38.61,30.00,31.64,-1.64,Before
REGRESSION.HCC1395_tumor.L005,44,Cycle,Base Insertion,26722,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,44,Cycle,Base Deletion,26722,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,45,Cycle,Base Substitution,26653,35.20,30.00,31.89,-1.89,Before
REGRESSION.HCC1395_tumor.L005,45,Cycle,Base Insertion,26647,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,45,Cycle,Base Deletion,26647,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,46,Cycle,Base Substitution,26725,21.57,31.00,31.83,-0.83,Before
REGRESSION.HCC1395_tumor.L005,46,Cycle,Base Insertion,26720,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,46,Cycle,Base Deletion,26720,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,47,Cycle,Base Substitution,26678,28.59,31.00,31.66,-0.66,Before
REGRESSION.HCC1395_tumor.L005,47,Cycle,Base Insertion,26669,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,47,Cycle,Base Deletion,26669,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,48,Cycle,Base Substitution,26676,24.74,31.00,31.69,-0.69,Before
REGRESSION.HCC1395_tumor.L005,48,Cycle,Base Insertion,26663,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,48,Cycle,Base Deletion,26663,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,49,Cycle,Base Substitution,26624,32.27,30.00,31.36,-1.36,Before
REGRESSION.HCC1395_tumor.L005,49,Cycle,Base Insertion,26610,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,49,Cycle,Base Deletion,26610,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,5,Cycle,Base Substitution,27155,42.60,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L005,5,Cycle,Base Insertion,27155,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,5,Cycle,Base Deletion,27155,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,50,Cycle,Base Substitution,26702,34.81,30.00,31.07,-1.07,Before
REGRESSION.HCC1395_tumor.L005,50,Cycle,Base Insertion,26681,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,50,Cycle,Base Deletion,26681,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,51,Cycle,Base Substitution,26689,31.68,30.00,31.75,-1.75,Before
REGRESSION.HCC1395_tumor.L005,51,Cycle,Base Insertion,26666,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,51,Cycle,Base Deletion,26666,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,52,Cycle,Base Substitution,26707,33.27,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L005,52,Cycle,Base Insertion,26686,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,52,Cycle,Base Deletion,26686,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,53,Cycle,Base Substitution,26634,30.46,31.00,31.54,-0.54,Before
REGRESSION.HCC1395_tumor.L005,53,Cycle,Base Insertion,26605,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,53,Cycle,Base Deletion,26605,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,54,Cycle,Base Substitution,26560,32.29,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L005,54,Cycle,Base Insertion,26527,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,54,Cycle,Base Deletion,26527,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,55,Cycle,Base Substitution,26693,38.08,30.00,31.58,-1.58,Before
REGRESSION.HCC1395_tumor.L005,55,Cycle,Base Insertion,26658,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,55,Cycle,Base Deletion,26658,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,56,Cycle,Base Substitution,26535,31.44,31.00,31.72,-0.72,Before
REGRESSION.HCC1395_tumor.L005,56,Cycle,Base Insertion,26498,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,56,Cycle,Base Deletion,26498,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,57,Cycle,Base Substitution,26565,37.99,30.00,31.42,-1.42,Before
REGRESSION.HCC1395_tumor.L005,57,Cycle,Base Insertion,26534,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,57,Cycle,Base Deletion,26534,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,58,Cycle,Base Substitution,26574,36.46,30.00,31.50,-1.50,Before
REGRESSION.HCC1395_tumor.L005,58,Cycle,Base Insertion,26544,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,58,Cycle,Base Deletion,26544,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,59,Cycle,Base Substitution,26535,32.25,30.00,31.22,-1.22,Before
REGRESSION.HCC1395_tumor.L005,59,Cycle,Base Insertion,26497,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,59,Cycle,Base Deletion,26497,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,6,Cycle,Base Substitution,27112,32.00,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L005,6,Cycle,Base Insertion,27112,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,6,Cycle,Base Deletion,27112,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,60,Cycle,Base Substitution,26590,35.99,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L005,60,Cycle,Base Insertion,26547,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,60,Cycle,Base Deletion,26547,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,61,Cycle,Base Substitution,26479,28.66,31.00,31.28,-0.28,Before
REGRESSION.HCC1395_tumor.L005,61,Cycle,Base Insertion,26423,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,61,Cycle,Base Deletion,26423,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,62,Cycle,Base Substitution,26430,35.99,30.00,31.44,-1.44,Before
REGRESSION.HCC1395_tumor.L005,62,Cycle,Base Insertion,26371,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,62,Cycle,Base Deletion,26371,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,63,Cycle,Base Substitution,26502,44.47,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L005,63,Cycle,Base Insertion,26433,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,63,Cycle,Base Deletion,26433,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,64,Cycle,Base Substitution,26451,37.04,30.00,31.58,-1.58,Before
REGRESSION.HCC1395_tumor.L005,64,Cycle,Base Insertion,26389,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,64,Cycle,Base Deletion,26389,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,65,Cycle,Base Substitution,26427,35.71,30.00,31.33,-1.33,Before
REGRESSION.HCC1395_tumor.L005,65,Cycle,Base Insertion,26362,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,65,Cycle,Base Deletion,26362,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,66,Cycle,Base Substitution,26471,28.17,31.00,31.31,-0.31,Before
REGRESSION.HCC1395_tumor.L005,66,Cycle,Base Insertion,26402,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,66,Cycle,Base Deletion,26402,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,67,Cycle,Base Substitution,26404,37.00,30.00,31.63,-1.63,Before
REGRESSION.HCC1395_tumor.L005,67,Cycle,Base Insertion,26334,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,67,Cycle,Base Deletion,26334,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,68,Cycle,Base Substitution,26398,32.33,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L005,68,Cycle,Base Insertion,26321,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,68,Cycle,Base Deletion,26321,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,69,Cycle,Base Substitution,26359,25.30,31.00,31.23,-0.23,Before
REGRESSION.HCC1395_tumor.L005,69,Cycle,Base Insertion,26275,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,69,Cycle,Base Deletion,26275,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,7,Cycle,Base Substitution,27119,34.89,30.00,30.90,-0.90,Before
REGRESSION.HCC1395_tumor.L005,7,Cycle,Base Insertion,27119,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,7,Cycle,Base Deletion,27119,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,70,Cycle,Base Substitution,26308,31.05,31.00,31.22,-0.22,Before
REGRESSION.HCC1395_tumor.L005,70,Cycle,Base Insertion,26209,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,70,Cycle,Base Deletion,26209,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,71,Cycle,Base Substitution,26281,37.52,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L005,71,Cycle,Base Insertion,26176,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,71,Cycle,Base Deletion,26176,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,72,Cycle,Base Substitution,26198,37.21,30.00,31.18,-1.18,Before
REGRESSION.HCC1395_tumor.L005,72,Cycle,Base Insertion,26089,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,72,Cycle,Base Deletion,26089,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,73,Cycle,Base Substitution,26179,48.18,29.00,30.90,-1.90,Before
REGRESSION.HCC1395_tumor.L005,73,Cycle,Base Insertion,26054,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,73,Cycle,Base Deletion,26054,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,74,Cycle,Base Substitution,26296,36.71,30.00,31.07,-1.07,Before
REGRESSION.HCC1395_tumor.L005,74,Cycle,Base Insertion,26171,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,74,Cycle,Base Deletion,26171,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,75,Cycle,Base Substitution,26232,32.06,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L005,75,Cycle,Base Insertion,26105,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,75,Cycle,Base Deletion,26105,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,76,Cycle,Base Substitution,26172,34.37,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L005,76,Cycle,Base Insertion,26036,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,76,Cycle,Base Deletion,26036,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,77,Cycle,Base Substitution,26079,39.75,30.00,31.14,-1.14,Before
REGRESSION.HCC1395_tumor.L005,77,Cycle,Base Insertion,25943,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,77,Cycle,Base Deletion,25943,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,78,Cycle,Base Substitution,26076,31.73,30.00,31.31,-1.31,Before
REGRESSION.HCC1395_tumor.L005,78,Cycle,Base Insertion,25936,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,78,Cycle,Base Deletion,25936,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,79,Cycle,Base Substitution,25956,42.09,30.00,31.23,-1.23,Before
REGRESSION.HCC1395_tumor.L005,79,Cycle,Base Insertion,25793,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,79,Cycle,Base Deletion,25793,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,8,Cycle,Base Substitution,27191,40.62,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L005,8,Cycle,Base Insertion,27191,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,8,Cycle,Base Deletion,27191,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,80,Cycle,Base Substitution,26039,37.97,29.00,30.97,-1.97,Before
REGRESSION.HCC1395_tumor.L005,80,Cycle,Base Insertion,25879,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,80,Cycle,Base Deletion,25879,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,81,Cycle,Base Substitution,25999,33.83,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L005,81,Cycle,Base Insertion,25835,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,81,Cycle,Base Deletion,25835,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,82,Cycle,Base Substitution,25909,38.65,30.00,31.08,-1.08,Before
REGRESSION.HCC1395_tumor.L005,82,Cycle,Base Insertion,25738,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,82,Cycle,Base Deletion,25738,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,83,Cycle,Base Substitution,25716,35.94,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L005,83,Cycle,Base Insertion,25534,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,83,Cycle,Base Deletion,25534,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,84,Cycle,Base Substitution,25910,48.60,29.00,30.77,-1.77,Before
REGRESSION.HCC1395_tumor.L005,84,Cycle,Base Insertion,25715,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,84,Cycle,Base Deletion,25715,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,85,Cycle,Base Substitution,25765,38.47,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L005,85,Cycle,Base Insertion,25569,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,85,Cycle,Base Deletion,25569,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,86,Cycle,Base Substitution,25676,38.62,29.00,30.92,-1.92,Before
REGRESSION.HCC1395_tumor.L005,86,Cycle,Base Insertion,25483,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,86,Cycle,Base Deletion,25483,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,87,Cycle,Base Substitution,25842,37.69,29.00,30.83,-1.83,Before
REGRESSION.HCC1395_tumor.L005,87,Cycle,Base Insertion,25637,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,87,Cycle,Base Deletion,25637,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,88,Cycle,Base Substitution,25590,47.73,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L005,88,Cycle,Base Insertion,25380,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,88,Cycle,Base Deletion,25380,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,89,Cycle,Base Substitution,25664,44.92,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L005,89,Cycle,Base Insertion,25460,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,89,Cycle,Base Deletion,25460,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,9,Cycle,Base Substitution,27072,30.62,31.00,31.39,-0.39,Before
REGRESSION.HCC1395_tumor.L005,9,Cycle,Base Insertion,27072,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,9,Cycle,Base Deletion,27072,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,90,Cycle,Base Substitution,25715,54.60,29.00,31.06,-2.06,Before
REGRESSION.HCC1395_tumor.L005,90,Cycle,Base Insertion,25488,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,90,Cycle,Base Deletion,25488,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,91,Cycle,Base Substitution,25499,42.74,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L005,91,Cycle,Base Insertion,25272,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,91,Cycle,Base Deletion,25272,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,92,Cycle,Base Substitution,25397,34.89,30.00,30.94,-0.94,Before
REGRESSION.HCC1395_tumor.L005,92,Cycle,Base Insertion,25159,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,92,Cycle,Base Deletion,25159,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,93,Cycle,Base Substitution,25262,38.05,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L005,93,Cycle,Base Insertion,25023,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,93,Cycle,Base Deletion,25023,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,94,Cycle,Base Substitution,25375,33.53,30.00,30.83,-0.83,Before
REGRESSION.HCC1395_tumor.L005,94,Cycle,Base Insertion,25124,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,94,Cycle,Base Deletion,25124,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,95,Cycle,Base Substitution,25264,43.64,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L005,95,Cycle,Base Insertion,25011,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,95,Cycle,Base Deletion,25011,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,96,Cycle,Base Substitution,25117,43.30,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L005,96,Cycle,Base Insertion,24862,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,96,Cycle,Base Deletion,24862,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,97,Cycle,Base Substitution,25111,38.11,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L005,97,Cycle,Base Insertion,24864,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,97,Cycle,Base Deletion,24864,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,98,Cycle,Base Substitution,25016,43.79,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L005,98,Cycle,Base Insertion,24761,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,98,Cycle,Base Deletion,24761,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,99,Cycle,Base Substitution,25058,35.41,30.00,30.96,-0.96,Before
REGRESSION.HCC1395_tumor.L005,99,Cycle,Base Insertion,24794,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,99,Cycle,Base Deletion,24794,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,12,QualityScore,Base Substitution,80813,7750.91,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L005,24,QualityScore,Base Substitution,197200,805.63,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L005,40,QualityScore,Base Substitution,7315440,5561.25,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L005,45,QualityScore,Base Insertion,7593453,134.44,47.00,45.00,2.00,Before
REGRESSION.HCC1395_tumor.L005,45,QualityScore,Base Deletion,7593453,318.74,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L006,AA,Context,Base Substitution,521248,1421.59,26.00,29.56,-3.56,Before
REGRESSION.HCC1395_tumor.L006,AAA,Context,Base Insertion,176566,24.16,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L006,AAA,Context,Base Deletion,176566,80.72,41.00,45.00,-4.00,Before
REGRESSION.HCC1395_tumor.L006,AAC,Context,Base Insertion,85012,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AAC,Context,Base Deletion,85012,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AAG,Context,Base Insertion,133043,4.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AAG,Context,Base Deletion,133043,4.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AAT,Context,Base Insertion,101081,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AAT,Context,Base Deletion,101081,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AC,Context,Base Substitution,354833,1093.93,25.00,28.68,-3.68,Before
REGRESSION.HCC1395_tumor.L006,ACA,Context,Base Insertion,131369,2.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ACA,Context,Base Deletion,131369,6.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ACC,Context,Base Insertion,103798,3.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ACC,Context,Base Deletion,103798,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ACG,Context,Base Insertion,20526,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ACG,Context,Base Deletion,20526,2.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ACT,Context,Base Insertion,104890,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ACT,Context,Base Deletion,104890,4.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AG,Context,Base Substitution,558648,547.40,30.00,31.67,-1.67,Before
REGRESSION.HCC1395_tumor.L006,AGA,Context,Base Insertion,151250,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AGA,Context,Base Deletion,151250,3.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AGC,Context,Base Insertion,139021,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AGC,Context,Base Deletion,139021,4.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AGG,Context,Base Insertion,162454,6.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AGG,Context,Base Deletion,162454,4.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AGT,Context,Base Insertion,102539,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AGT,Context,Base Deletion,102539,3.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,AT,Context,Base Substitution,368346,465.83,29.00,32.04,-3.04,Before
REGRESSION.HCC1395_tumor.L006,ATA,Context,Base Insertion,74619,0.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ATA,Context,Base Deletion,74619,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ATC,Context,Base Insertion,78981,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ATC,Context,Base Deletion,78981,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ATG,Context,Base Insertion,114650,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ATG,Context,Base Deletion,114650,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ATT,Context,Base Insertion,107622,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,ATT,Context,Base Deletion,107622,2.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CA,Context,Base Substitution,591296,1254.06,27.00,29.97,-2.97,Before
REGRESSION.HCC1395_tumor.L006,CAA,Context,Base Insertion,111772,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CAA,Context,Base Deletion,111772,3.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CAC,Context,Base Insertion,124789,4.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CAC,Context,Base Deletion,124789,7.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CAG,Context,Base Insertion,212140,5.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CAG,Context,Base Deletion,212140,9.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CAT,Context,Base Insertion,110892,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CAT,Context,Base Deletion,110892,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CC,Context,Base Substitution,547047,1716.41,25.00,28.92,-3.92,Before
REGRESSION.HCC1395_tumor.L006,CCA,Context,Base Insertion,175330,1.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CCA,Context,Base Deletion,175330,3.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CCC,Context,Base Insertion,149917,6.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CCC,Context,Base Deletion,149917,7.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CCG,Context,Base Insertion,37514,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CCG,Context,Base Deletion,37514,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CCT,Context,Base Insertion,176402,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CCT,Context,Base Deletion,176402,6.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CG,Context,Base Substitution,112837,343.45,26.00,29.52,-3.52,Before
REGRESSION.HCC1395_tumor.L006,CGA,Context,Base Insertion,44142,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CGA,Context,Base Deletion,44142,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CGC,Context,Base Insertion,62662,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CGC,Context,Base Deletion,62662,2.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CGG,Context,Base Insertion,76509,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CGG,Context,Base Deletion,76509,2.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CGT,Context,Base Insertion,48403,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CGT,Context,Base Deletion,48403,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CT,Context,Base Substitution,591999,433.60,31.00,32.50,-1.50,Before
REGRESSION.HCC1395_tumor.L006,CTA,Context,Base Insertion,58235,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CTA,Context,Base Deletion,58235,4.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CTC,Context,Base Insertion,145258,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CTC,Context,Base Deletion,145258,8.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CTG,Context,Base Insertion,211634,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CTG,Context,Base Deletion,211634,5.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CTT,Context,Base Insertion,145223,3.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,CTT,Context,Base Deletion,145223,5.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GA,Context,Base Substitution,493589,881.29,28.00,29.60,-1.60,Before
REGRESSION.HCC1395_tumor.L006,GAA,Context,Base Insertion,140911,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GAA,Context,Base Deletion,140911,2.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GAC,Context,Base Insertion,83365,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GAC,Context,Base Deletion,83365,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GAG,Context,Base Insertion,149351,0.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GAG,Context,Base Deletion,149351,2.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GAT,Context,Base Insertion,83382,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GAT,Context,Base Deletion,83382,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GC,Context,Base Substitution,483999,1119.30,27.00,30.11,-3.11,Before
REGRESSION.HCC1395_tumor.L006,GCA,Context,Base Insertion,147914,2.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GCA,Context,Base Deletion,147914,2.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GCC,Context,Base Insertion,145311,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GCC,Context,Base Deletion,145311,6.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GCG,Context,Base Insertion,35610,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GCG,Context,Base Deletion,35610,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GCT,Context,Base Insertion,153777,2.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GCT,Context,Base Deletion,153777,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GG,Context,Base Substitution,572127,778.75,29.00,31.64,-2.64,Before
REGRESSION.HCC1395_tumor.L006,GGA,Context,Base Insertion,155563,2.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GGA,Context,Base Deletion,155563,4.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GGC,Context,Base Insertion,143583,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GGC,Context,Base Deletion,143583,5.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GGG,Context,Base Insertion,156667,4.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GGG,Context,Base Deletion,156667,10.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GGT,Context,Base Insertion,114248,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GGT,Context,Base Deletion,114248,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GT,Context,Base Substitution,404906,695.03,28.00,32.00,-4.00,Before
REGRESSION.HCC1395_tumor.L006,GTA,Context,Base Insertion,65489,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GTA,Context,Base Deletion,65489,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GTC,Context,Base Insertion,90556,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GTC,Context,Base Deletion,90556,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GTG,Context,Base Insertion,138583,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GTG,Context,Base Deletion,138583,8.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GTT,Context,Base Insertion,99186,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,GTT,Context,Base Deletion,99186,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TA,Context,Base Substitution,287147,806.46,26.00,29.66,-3.66,Before
REGRESSION.HCC1395_tumor.L006,TAA,Context,Base Insertion,87519,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TAA,Context,Base Deletion,87519,4.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TAC,Context,Base Insertion,59333,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TAC,Context,Base Deletion,59333,3.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TAG,Context,Base Insertion,59706,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TAG,Context,Base Deletion,59706,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TAT,Context,Base Insertion,70297,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TAT,Context,Base Deletion,70297,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TC,Context,Base Substitution,446351,1015.65,27.00,30.48,-3.48,Before
REGRESSION.HCC1395_tumor.L006,TCA,Context,Base Insertion,132119,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TCA,Context,Base Deletion,132119,6.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TCC,Context,Base Insertion,144423,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TCC,Context,Base Deletion,144423,4.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TCG,Context,Base Insertion,18327,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TCG,Context,Base Deletion,18327,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TCT,Context,Base Insertion,152905,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TCT,Context,Base Deletion,152905,6.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TG,Context,Base Substitution,582304,451.08,31.00,31.80,-0.80,Before
REGRESSION.HCC1395_tumor.L006,TGA,Context,Base Insertion,138847,0.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TGA,Context,Base Deletion,138847,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TGC,Context,Base Insertion,135568,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TGC,Context,Base Deletion,135568,2.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TGG,Context,Base Insertion,172232,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TGG,Context,Base Deletion,172232,4.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TGT,Context,Base Insertion,136995,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TGT,Context,Base Deletion,136995,4.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TT,Context,Base Substitution,533734,714.98,29.00,32.84,-3.84,Before
REGRESSION.HCC1395_tumor.L006,TTA,Context,Base Insertion,86597,2.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TTA,Context,Base Deletion,86597,3.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TTC,Context,Base Insertion,128840,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TTC,Context,Base Deletion,128840,7.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TTG,Context,Base Insertion,113298,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TTG,Context,Base Deletion,113298,2.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,TTT,Context,Base Insertion,178089,16.84,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L006,TTT,Context,Base Deletion,178089,54.66,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L006,-1,Cycle,Base Substitution,26433,96.48,25.00,26.04,-1.04,Before
REGRESSION.HCC1395_tumor.L006,-10,Cycle,Base Substitution,26750,32.59,30.00,31.12,-1.12,Before
REGRESSION.HCC1395_tumor.L006,-10,Cycle,Base Insertion,26750,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-10,Cycle,Base Deletion,26750,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-100,Cycle,Base Substitution,24515,50.57,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L006,-100,Cycle,Base Insertion,24268,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-100,Cycle,Base Deletion,24268,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-101,Cycle,Base Substitution,24573,46.18,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L006,-101,Cycle,Base Insertion,24334,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-101,Cycle,Base Deletion,24334,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-102,Cycle,Base Substitution,24477,56.20,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L006,-102,Cycle,Base Insertion,24227,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-102,Cycle,Base Deletion,24227,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-103,Cycle,Base Substitution,24373,36.98,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L006,-103,Cycle,Base Insertion,24131,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-103,Cycle,Base Deletion,24131,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-104,Cycle,Base Substitution,24336,44.05,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L006,-104,Cycle,Base Insertion,24094,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-104,Cycle,Base Deletion,24094,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-105,Cycle,Base Substitution,24337,47.35,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L006,-105,Cycle,Base Insertion,24103,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-105,Cycle,Base Deletion,24103,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-106,Cycle,Base Substitution,24271,37.76,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L006,-106,Cycle,Base Insertion,24035,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-106,Cycle,Base Deletion,24035,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-107,Cycle,Base Substitution,24239,44.83,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L006,-107,Cycle,Base Insertion,23990,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-107,Cycle,Base Deletion,23990,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-108,Cycle,Base Substitution,24182,47.55,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L006,-108,Cycle,Base Insertion,23922,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-108,Cycle,Base Deletion,23922,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-109,Cycle,Base Substitution,24030,40.49,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L006,-109,Cycle,Base Insertion,23776,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-109,Cycle,Base Deletion,23776,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-11,Cycle,Base Substitution,26769,39.18,30.00,31.41,-1.41,Before
REGRESSION.HCC1395_tumor.L006,-11,Cycle,Base Insertion,26769,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-11,Cycle,Base Deletion,26769,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-110,Cycle,Base Substitution,23978,45.37,28.00,29.82,-1.82,Before
REGRESSION.HCC1395_tumor.L006,-110,Cycle,Base Insertion,23718,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-110,Cycle,Base Deletion,23718,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-111,Cycle,Base Substitution,23973,41.22,29.00,29.71,-0.71,Before
REGRESSION.HCC1395_tumor.L006,-111,Cycle,Base Insertion,23713,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-111,Cycle,Base Deletion,23713,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-112,Cycle,Base Substitution,23901,47.81,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L006,-112,Cycle,Base Insertion,23625,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-112,Cycle,Base Deletion,23625,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-113,Cycle,Base Substitution,23932,46.00,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L006,-113,Cycle,Base Insertion,23642,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-113,Cycle,Base Deletion,23642,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-114,Cycle,Base Substitution,23834,37.21,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L006,-114,Cycle,Base Insertion,23533,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-114,Cycle,Base Deletion,23533,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-115,Cycle,Base Substitution,23665,53.89,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L006,-115,Cycle,Base Insertion,23357,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-115,Cycle,Base Deletion,23357,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-116,Cycle,Base Substitution,23587,56.54,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L006,-116,Cycle,Base Insertion,23296,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-116,Cycle,Base Deletion,23296,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-117,Cycle,Base Substitution,23597,58.03,28.00,29.54,-1.54,Before
REGRESSION.HCC1395_tumor.L006,-117,Cycle,Base Insertion,23300,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-117,Cycle,Base Deletion,23300,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-118,Cycle,Base Substitution,23516,56.71,28.00,29.69,-1.69,Before
REGRESSION.HCC1395_tumor.L006,-118,Cycle,Base Insertion,23222,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-118,Cycle,Base Deletion,23222,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-119,Cycle,Base Substitution,23549,67.59,27.00,29.72,-2.72,Before
REGRESSION.HCC1395_tumor.L006,-119,Cycle,Base Insertion,23255,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-119,Cycle,Base Deletion,23255,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-12,Cycle,Base Substitution,26718,31.66,30.00,31.79,-1.79,Before
REGRESSION.HCC1395_tumor.L006,-12,Cycle,Base Insertion,26718,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-12,Cycle,Base Deletion,26718,1.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-120,Cycle,Base Substitution,23460,51.03,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L006,-120,Cycle,Base Insertion,23173,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-120,Cycle,Base Deletion,23173,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-121,Cycle,Base Substitution,23277,67.39,27.00,29.76,-2.76,Before
REGRESSION.HCC1395_tumor.L006,-121,Cycle,Base Insertion,22974,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-121,Cycle,Base Deletion,22974,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-122,Cycle,Base Substitution,23186,46.76,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L006,-122,Cycle,Base Insertion,22887,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-122,Cycle,Base Deletion,22887,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-123,Cycle,Base Substitution,23300,52.35,28.00,29.49,-1.49,Before
REGRESSION.HCC1395_tumor.L006,-123,Cycle,Base Insertion,23008,0.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-123,Cycle,Base Deletion,23008,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-124,Cycle,Base Substitution,23204,55.52,28.00,29.47,-1.47,Before
REGRESSION.HCC1395_tumor.L006,-124,Cycle,Base Insertion,22919,0.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-124,Cycle,Base Deletion,22919,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-125,Cycle,Base Substitution,23077,44.79,28.00,29.75,-1.75,Before
REGRESSION.HCC1395_tumor.L006,-125,Cycle,Base Insertion,22779,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-125,Cycle,Base Deletion,22779,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-126,Cycle,Base Substitution,22999,45.34,28.00,29.65,-1.65,Before
REGRESSION.HCC1395_tumor.L006,-126,Cycle,Base Insertion,22705,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-126,Cycle,Base Deletion,22705,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-127,Cycle,Base Substitution,22992,49.10,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L006,-127,Cycle,Base Insertion,22712,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-127,Cycle,Base Deletion,22712,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-128,Cycle,Base Substitution,22919,43.95,28.00,29.58,-1.58,Before
REGRESSION.HCC1395_tumor.L006,-128,Cycle,Base Insertion,22616,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-128,Cycle,Base Deletion,22616,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-129,Cycle,Base Substitution,22940,43.13,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L006,-129,Cycle,Base Insertion,22616,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-129,Cycle,Base Deletion,22616,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-13,Cycle,Base Substitution,26717,46.38,30.00,31.33,-1.33,Before
REGRESSION.HCC1395_tumor.L006,-13,Cycle,Base Insertion,26717,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-13,Cycle,Base Deletion,26717,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-130,Cycle,Base Substitution,22810,46.53,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L006,-130,Cycle,Base Insertion,22489,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-130,Cycle,Base Deletion,22489,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-131,Cycle,Base Substitution,22745,40.91,28.00,29.65,-1.65,Before
REGRESSION.HCC1395_tumor.L006,-131,Cycle,Base Insertion,22420,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-131,Cycle,Base Deletion,22420,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-132,Cycle,Base Substitution,22591,42.98,28.00,29.49,-1.49,Before
REGRESSION.HCC1395_tumor.L006,-132,Cycle,Base Insertion,22278,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-132,Cycle,Base Deletion,22278,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-133,Cycle,Base Substitution,22488,48.92,28.00,29.46,-1.46,Before
REGRESSION.HCC1395_tumor.L006,-133,Cycle,Base Insertion,22193,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-133,Cycle,Base Deletion,22193,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-134,Cycle,Base Substitution,22354,34.82,29.00,29.84,-0.84,Before
REGRESSION.HCC1395_tumor.L006,-134,Cycle,Base Insertion,22052,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-134,Cycle,Base Deletion,22052,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-135,Cycle,Base Substitution,22352,48.29,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L006,-135,Cycle,Base Insertion,22038,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-135,Cycle,Base Deletion,22038,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-136,Cycle,Base Substitution,22339,42.71,28.00,29.74,-1.74,Before
REGRESSION.HCC1395_tumor.L006,-136,Cycle,Base Insertion,22004,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-136,Cycle,Base Deletion,22004,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-137,Cycle,Base Substitution,22289,49.62,28.00,29.73,-1.73,Before
REGRESSION.HCC1395_tumor.L006,-137,Cycle,Base Insertion,21936,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-137,Cycle,Base Deletion,21936,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-138,Cycle,Base Substitution,22181,55.21,28.00,29.54,-1.54,Before
REGRESSION.HCC1395_tumor.L006,-138,Cycle,Base Insertion,21815,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-138,Cycle,Base Deletion,21815,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-139,Cycle,Base Substitution,22193,44.43,28.00,29.45,-1.45,Before
REGRESSION.HCC1395_tumor.L006,-139,Cycle,Base Insertion,21800,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-139,Cycle,Base Deletion,21800,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-14,Cycle,Base Substitution,26786,35.41,30.00,31.67,-1.67,Before
REGRESSION.HCC1395_tumor.L006,-14,Cycle,Base Insertion,26786,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-14,Cycle,Base Deletion,26786,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-140,Cycle,Base Substitution,22031,40.44,28.00,29.52,-1.52,Before
REGRESSION.HCC1395_tumor.L006,-140,Cycle,Base Insertion,21667,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-140,Cycle,Base Deletion,21667,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-141,Cycle,Base Substitution,21913,38.51,28.00,29.64,-1.64,Before
REGRESSION.HCC1395_tumor.L006,-141,Cycle,Base Insertion,21529,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-141,Cycle,Base Deletion,21529,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-142,Cycle,Base Substitution,21820,43.89,28.00,29.51,-1.51,Before
REGRESSION.HCC1395_tumor.L006,-142,Cycle,Base Insertion,21399,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-142,Cycle,Base Deletion,21399,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-143,Cycle,Base Substitution,21697,42.52,28.00,29.42,-1.42,Before
REGRESSION.HCC1395_tumor.L006,-143,Cycle,Base Insertion,21249,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-143,Cycle,Base Deletion,21249,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-144,Cycle,Base Substitution,21601,25.83,29.00,29.84,-0.84,Before
REGRESSION.HCC1395_tumor.L006,-144,Cycle,Base Insertion,21101,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-144,Cycle,Base Deletion,21101,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-145,Cycle,Base Substitution,21449,33.96,29.00,29.75,-0.75,Before
REGRESSION.HCC1395_tumor.L006,-145,Cycle,Base Insertion,16490,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-145,Cycle,Base Deletion,16490,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-146,Cycle,Base Substitution,21267,67.23,27.00,29.80,-2.80,Before
REGRESSION.HCC1395_tumor.L006,-146,Cycle,Base Insertion,16386,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-146,Cycle,Base Deletion,16386,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-147,Cycle,Base Substitution,21233,241.83,22.00,29.68,-7.68,Before
REGRESSION.HCC1395_tumor.L006,-148,Cycle,Base Substitution,21178,853.28,15.00,30.12,-15.12,Before
REGRESSION.HCC1395_tumor.L006,-149,Cycle,Base Substitution,13184,772.87,14.00,30.34,-16.34,Before
REGRESSION.HCC1395_tumor.L006,-15,Cycle,Base Substitution,26677,27.06,31.00,31.64,-0.64,Before
REGRESSION.HCC1395_tumor.L006,-15,Cycle,Base Insertion,26677,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-15,Cycle,Base Deletion,26677,2.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-150,Cycle,Base Substitution,4563,9.97,30.00,30.25,-0.25,Before
REGRESSION.HCC1395_tumor.L006,-16,Cycle,Base Substitution,26680,35.54,30.00,31.41,-1.41,Before
REGRESSION.HCC1395_tumor.L006,-16,Cycle,Base Insertion,26680,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-16,Cycle,Base Deletion,26680,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-17,Cycle,Base Substitution,26704,35.59,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L006,-17,Cycle,Base Insertion,26704,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-17,Cycle,Base Deletion,26704,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-18,Cycle,Base Substitution,26682,38.22,30.00,31.92,-1.92,Before
REGRESSION.HCC1395_tumor.L006,-18,Cycle,Base Insertion,26682,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-18,Cycle,Base Deletion,26682,2.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-19,Cycle,Base Substitution,26724,32.48,30.00,31.91,-1.91,Before
REGRESSION.HCC1395_tumor.L006,-19,Cycle,Base Insertion,26724,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-19,Cycle,Base Deletion,26724,2.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-2,Cycle,Base Substitution,26793,74.88,27.00,28.46,-1.46,Before
REGRESSION.HCC1395_tumor.L006,-20,Cycle,Base Substitution,26674,38.88,30.00,31.64,-1.64,Before
REGRESSION.HCC1395_tumor.L006,-20,Cycle,Base Insertion,26674,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-20,Cycle,Base Deletion,26674,3.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-21,Cycle,Base Substitution,26601,29.74,31.00,31.85,-0.85,Before
REGRESSION.HCC1395_tumor.L006,-21,Cycle,Base Insertion,26601,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-21,Cycle,Base Deletion,26601,2.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-22,Cycle,Base Substitution,26577,32.30,30.00,31.88,-1.88,Before
REGRESSION.HCC1395_tumor.L006,-22,Cycle,Base Insertion,26577,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-22,Cycle,Base Deletion,26577,2.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-23,Cycle,Base Substitution,26676,31.44,31.00,31.53,-0.53,Before
REGRESSION.HCC1395_tumor.L006,-23,Cycle,Base Insertion,26676,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-23,Cycle,Base Deletion,26676,2.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-24,Cycle,Base Substitution,26653,41.06,30.00,31.80,-1.80,Before
REGRESSION.HCC1395_tumor.L006,-24,Cycle,Base Insertion,26653,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-24,Cycle,Base Deletion,26653,2.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-25,Cycle,Base Substitution,26632,27.59,31.00,32.16,-1.16,Before
REGRESSION.HCC1395_tumor.L006,-25,Cycle,Base Insertion,26632,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-25,Cycle,Base Deletion,26632,2.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-26,Cycle,Base Substitution,26641,39.86,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L006,-26,Cycle,Base Insertion,26641,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-26,Cycle,Base Deletion,26641,2.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-27,Cycle,Base Substitution,26594,26.33,30.00,30.05,-0.05,Before
REGRESSION.HCC1395_tumor.L006,-27,Cycle,Base Insertion,26594,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-27,Cycle,Base Deletion,26594,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-28,Cycle,Base Substitution,26616,38.49,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L006,-28,Cycle,Base Insertion,26616,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-28,Cycle,Base Deletion,26616,1.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-29,Cycle,Base Substitution,26411,35.98,29.00,29.99,-0.99,Before
REGRESSION.HCC1395_tumor.L006,-29,Cycle,Base Insertion,26411,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-29,Cycle,Base Deletion,26411,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-3,Cycle,Base Substitution,26969,78.46,27.00,29.58,-2.58,Before
REGRESSION.HCC1395_tumor.L006,-30,Cycle,Base Substitution,26539,32.97,30.00,30.17,-0.17,Before
REGRESSION.HCC1395_tumor.L006,-30,Cycle,Base Insertion,26539,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-30,Cycle,Base Deletion,26539,2.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-31,Cycle,Base Substitution,26482,45.09,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L006,-31,Cycle,Base Insertion,26482,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-31,Cycle,Base Deletion,26482,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-32,Cycle,Base Substitution,26532,31.11,30.00,30.66,-0.66,Before
REGRESSION.HCC1395_tumor.L006,-32,Cycle,Base Insertion,26531,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-32,Cycle,Base Deletion,26531,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-33,Cycle,Base Substitution,26487,49.09,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L006,-33,Cycle,Base Insertion,26486,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-33,Cycle,Base Deletion,26486,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-34,Cycle,Base Substitution,26523,47.96,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L006,-34,Cycle,Base Insertion,26522,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-34,Cycle,Base Deletion,26522,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-35,Cycle,Base Substitution,26579,29.97,30.00,30.45,-0.45,Before
REGRESSION.HCC1395_tumor.L006,-35,Cycle,Base Insertion,26575,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-35,Cycle,Base Deletion,26575,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-36,Cycle,Base Substitution,26510,44.70,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L006,-36,Cycle,Base Insertion,26507,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-36,Cycle,Base Deletion,26507,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-37,Cycle,Base Substitution,26563,28.63,30.00,30.55,-0.55,Before
REGRESSION.HCC1395_tumor.L006,-37,Cycle,Base Insertion,26559,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-37,Cycle,Base Deletion,26559,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-38,Cycle,Base Substitution,26486,35.82,30.00,30.25,-0.25,Before
REGRESSION.HCC1395_tumor.L006,-38,Cycle,Base Insertion,26482,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-38,Cycle,Base Deletion,26482,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-39,Cycle,Base Substitution,26512,27.77,30.00,30.40,-0.40,Before
REGRESSION.HCC1395_tumor.L006,-39,Cycle,Base Insertion,26511,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-39,Cycle,Base Deletion,26511,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-4,Cycle,Base Substitution,26749,74.17,28.00,30.02,-2.02,Before
REGRESSION.HCC1395_tumor.L006,-40,Cycle,Base Substitution,26430,30.46,30.00,30.54,-0.54,Before
REGRESSION.HCC1395_tumor.L006,-40,Cycle,Base Insertion,26427,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-40,Cycle,Base Deletion,26427,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-41,Cycle,Base Substitution,26470,45.13,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L006,-41,Cycle,Base Insertion,26467,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-41,Cycle,Base Deletion,26467,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-42,Cycle,Base Substitution,26388,36.66,30.00,30.57,-0.57,Before
REGRESSION.HCC1395_tumor.L006,-42,Cycle,Base Insertion,26385,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-42,Cycle,Base Deletion,26385,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-43,Cycle,Base Substitution,26401,33.77,30.00,30.52,-0.52,Before
REGRESSION.HCC1395_tumor.L006,-43,Cycle,Base Insertion,26400,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-43,Cycle,Base Deletion,26400,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-44,Cycle,Base Substitution,26344,40.02,29.00,30.98,-1.98,Before
REGRESSION.HCC1395_tumor.L006,-44,Cycle,Base Insertion,26343,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-44,Cycle,Base Deletion,26343,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-45,Cycle,Base Substitution,26388,40.64,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L006,-45,Cycle,Base Insertion,26382,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-45,Cycle,Base Deletion,26382,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-46,Cycle,Base Substitution,26279,35.36,30.00,30.35,-0.35,Before
REGRESSION.HCC1395_tumor.L006,-46,Cycle,Base Insertion,26274,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-46,Cycle,Base Deletion,26274,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-47,Cycle,Base Substitution,26367,41.61,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L006,-47,Cycle,Base Insertion,26359,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-47,Cycle,Base Deletion,26359,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-48,Cycle,Base Substitution,26380,37.16,30.00,30.72,-0.72,Before
REGRESSION.HCC1395_tumor.L006,-48,Cycle,Base Insertion,26374,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-48,Cycle,Base Deletion,26374,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-49,Cycle,Base Substitution,26378,44.90,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L006,-49,Cycle,Base Insertion,26374,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-49,Cycle,Base Deletion,26374,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-5,Cycle,Base Substitution,26783,58.20,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L006,-5,Cycle,Base Insertion,26783,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-5,Cycle,Base Deletion,26783,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-50,Cycle,Base Substitution,26335,45.99,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L006,-50,Cycle,Base Insertion,26321,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-50,Cycle,Base Deletion,26321,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-51,Cycle,Base Substitution,26354,42.14,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L006,-51,Cycle,Base Insertion,26342,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-51,Cycle,Base Deletion,26342,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-52,Cycle,Base Substitution,26359,46.24,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L006,-52,Cycle,Base Insertion,26342,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-52,Cycle,Base Deletion,26342,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-53,Cycle,Base Substitution,26357,30.28,30.00,30.44,-0.44,Before
REGRESSION.HCC1395_tumor.L006,-53,Cycle,Base Insertion,26333,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-53,Cycle,Base Deletion,26333,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-54,Cycle,Base Substitution,26318,38.35,29.00,30.82,-1.82,Before
REGRESSION.HCC1395_tumor.L006,-54,Cycle,Base Insertion,26293,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-54,Cycle,Base Deletion,26293,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-55,Cycle,Base Substitution,26079,33.72,30.00,30.34,-0.34,Before
REGRESSION.HCC1395_tumor.L006,-55,Cycle,Base Insertion,26049,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-55,Cycle,Base Deletion,26049,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-56,Cycle,Base Substitution,26316,31.98,30.00,30.94,-0.94,Before
REGRESSION.HCC1395_tumor.L006,-56,Cycle,Base Insertion,26276,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-56,Cycle,Base Deletion,26276,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-57,Cycle,Base Substitution,26212,40.90,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L006,-57,Cycle,Base Insertion,26175,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-57,Cycle,Base Deletion,26175,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-58,Cycle,Base Substitution,26339,36.00,30.00,30.56,-0.56,Before
REGRESSION.HCC1395_tumor.L006,-58,Cycle,Base Insertion,26297,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-58,Cycle,Base Deletion,26297,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-59,Cycle,Base Substitution,26083,27.07,30.00,30.99,-0.99,Before
REGRESSION.HCC1395_tumor.L006,-59,Cycle,Base Insertion,26036,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-59,Cycle,Base Deletion,26036,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-6,Cycle,Base Substitution,26780,50.31,29.00,30.77,-1.77,Before
REGRESSION.HCC1395_tumor.L006,-6,Cycle,Base Insertion,26780,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-6,Cycle,Base Deletion,26780,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-60,Cycle,Base Substitution,26117,38.09,29.00,30.73,-1.73,Before
REGRESSION.HCC1395_tumor.L006,-60,Cycle,Base Insertion,26068,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-60,Cycle,Base Deletion,26068,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-61,Cycle,Base Substitution,26064,33.35,30.00,30.49,-0.49,Before
REGRESSION.HCC1395_tumor.L006,-61,Cycle,Base Insertion,26005,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-61,Cycle,Base Deletion,26005,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-62,Cycle,Base Substitution,26155,31.08,30.00,30.36,-0.36,Before
REGRESSION.HCC1395_tumor.L006,-62,Cycle,Base Insertion,26098,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-62,Cycle,Base Deletion,26098,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-63,Cycle,Base Substitution,26252,33.33,30.00,30.74,-0.74,Before
REGRESSION.HCC1395_tumor.L006,-63,Cycle,Base Insertion,26187,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-63,Cycle,Base Deletion,26187,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-64,Cycle,Base Substitution,26115,29.27,30.00,30.64,-0.64,Before
REGRESSION.HCC1395_tumor.L006,-64,Cycle,Base Insertion,26047,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-64,Cycle,Base Deletion,26047,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-65,Cycle,Base Substitution,26056,46.89,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L006,-65,Cycle,Base Insertion,25986,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-65,Cycle,Base Deletion,25986,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-66,Cycle,Base Substitution,25998,34.54,30.00,30.34,-0.34,Before
REGRESSION.HCC1395_tumor.L006,-66,Cycle,Base Insertion,25914,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-66,Cycle,Base Deletion,25914,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-67,Cycle,Base Substitution,26015,46.16,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L006,-67,Cycle,Base Insertion,25932,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-67,Cycle,Base Deletion,25932,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-68,Cycle,Base Substitution,26024,47.17,29.00,30.69,-1.69,Before
REGRESSION.HCC1395_tumor.L006,-68,Cycle,Base Insertion,25944,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-68,Cycle,Base Deletion,25944,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-69,Cycle,Base Substitution,26025,26.09,30.00,30.88,-0.88,Before
REGRESSION.HCC1395_tumor.L006,-69,Cycle,Base Insertion,25934,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-69,Cycle,Base Deletion,25934,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-7,Cycle,Base Substitution,26696,53.94,29.00,30.79,-1.79,Before
REGRESSION.HCC1395_tumor.L006,-7,Cycle,Base Insertion,26696,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-7,Cycle,Base Deletion,26696,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-70,Cycle,Base Substitution,26025,41.60,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L006,-70,Cycle,Base Insertion,25934,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-70,Cycle,Base Deletion,25934,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-71,Cycle,Base Substitution,25970,39.22,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L006,-71,Cycle,Base Insertion,25861,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-71,Cycle,Base Deletion,25861,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-72,Cycle,Base Substitution,25815,45.57,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L006,-72,Cycle,Base Insertion,25702,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-72,Cycle,Base Deletion,25702,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-73,Cycle,Base Substitution,25777,39.42,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L006,-73,Cycle,Base Insertion,25643,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-73,Cycle,Base Deletion,25643,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-74,Cycle,Base Substitution,25836,45.93,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L006,-74,Cycle,Base Insertion,25707,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-74,Cycle,Base Deletion,25707,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-75,Cycle,Base Substitution,25806,42.80,29.00,30.79,-1.79,Before
REGRESSION.HCC1395_tumor.L006,-75,Cycle,Base Insertion,25677,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-75,Cycle,Base Deletion,25677,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-76,Cycle,Base Substitution,25753,31.70,30.00,30.91,-0.91,Before
REGRESSION.HCC1395_tumor.L006,-76,Cycle,Base Insertion,25614,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-76,Cycle,Base Deletion,25614,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-77,Cycle,Base Substitution,25766,49.86,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L006,-77,Cycle,Base Insertion,25619,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-77,Cycle,Base Deletion,25619,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-78,Cycle,Base Substitution,25644,53.64,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L006,-78,Cycle,Base Insertion,25494,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-78,Cycle,Base Deletion,25494,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-79,Cycle,Base Substitution,25623,36.42,30.00,30.60,-0.60,Before
REGRESSION.HCC1395_tumor.L006,-79,Cycle,Base Insertion,25463,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-79,Cycle,Base Deletion,25463,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-8,Cycle,Base Substitution,26831,45.37,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L006,-8,Cycle,Base Insertion,26831,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-8,Cycle,Base Deletion,26831,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-80,Cycle,Base Substitution,25811,37.28,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L006,-80,Cycle,Base Insertion,25637,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-80,Cycle,Base Deletion,25637,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-81,Cycle,Base Substitution,25599,43.93,29.00,30.47,-1.47,Before
REGRESSION.HCC1395_tumor.L006,-81,Cycle,Base Insertion,25414,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-81,Cycle,Base Deletion,25414,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-82,Cycle,Base Substitution,25573,47.68,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L006,-82,Cycle,Base Insertion,25383,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-82,Cycle,Base Deletion,25383,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-83,Cycle,Base Substitution,25438,41.66,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L006,-83,Cycle,Base Insertion,25237,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-83,Cycle,Base Deletion,25237,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-84,Cycle,Base Substitution,25501,38.99,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L006,-84,Cycle,Base Insertion,25303,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-84,Cycle,Base Deletion,25303,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-85,Cycle,Base Substitution,25392,46.57,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L006,-85,Cycle,Base Insertion,25202,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-85,Cycle,Base Deletion,25202,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-86,Cycle,Base Substitution,25364,45.64,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L006,-86,Cycle,Base Insertion,25171,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-86,Cycle,Base Deletion,25171,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-87,Cycle,Base Substitution,25237,47.92,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L006,-87,Cycle,Base Insertion,25053,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-87,Cycle,Base Deletion,25053,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-88,Cycle,Base Substitution,25283,40.45,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L006,-88,Cycle,Base Insertion,25090,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-88,Cycle,Base Deletion,25090,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-89,Cycle,Base Substitution,25259,50.86,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L006,-89,Cycle,Base Insertion,25054,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-89,Cycle,Base Deletion,25054,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-9,Cycle,Base Substitution,26838,52.53,29.00,30.92,-1.92,Before
REGRESSION.HCC1395_tumor.L006,-9,Cycle,Base Insertion,26838,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-9,Cycle,Base Deletion,26838,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-90,Cycle,Base Substitution,25126,49.91,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L006,-90,Cycle,Base Insertion,24916,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-90,Cycle,Base Deletion,24916,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-91,Cycle,Base Substitution,25146,37.27,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L006,-91,Cycle,Base Insertion,24933,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-91,Cycle,Base Deletion,24933,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-92,Cycle,Base Substitution,25008,44.75,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L006,-92,Cycle,Base Insertion,24787,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-92,Cycle,Base Deletion,24787,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-93,Cycle,Base Substitution,24817,44.97,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L006,-93,Cycle,Base Insertion,24594,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-93,Cycle,Base Deletion,24594,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-94,Cycle,Base Substitution,24889,51.17,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L006,-94,Cycle,Base Insertion,24649,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-94,Cycle,Base Deletion,24649,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-95,Cycle,Base Substitution,24869,53.75,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L006,-95,Cycle,Base Insertion,24632,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-95,Cycle,Base Deletion,24632,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-96,Cycle,Base Substitution,24788,55.31,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L006,-96,Cycle,Base Insertion,24537,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-96,Cycle,Base Deletion,24537,2.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-97,Cycle,Base Substitution,24794,42.01,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L006,-97,Cycle,Base Insertion,24539,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-97,Cycle,Base Deletion,24539,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-98,Cycle,Base Substitution,24808,44.86,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L006,-98,Cycle,Base Insertion,24559,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-98,Cycle,Base Deletion,24559,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-99,Cycle,Base Substitution,24667,49.70,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L006,-99,Cycle,Base Insertion,24423,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,-99,Cycle,Base Deletion,24423,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,1,Cycle,Base Substitution,26501,59.56,27.00,28.68,-1.68,Before
REGRESSION.HCC1395_tumor.L006,10,Cycle,Base Substitution,26837,36.69,30.00,31.21,-1.21,Before
REGRESSION.HCC1395_tumor.L006,10,Cycle,Base Insertion,26837,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,10,Cycle,Base Deletion,26837,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,100,Cycle,Base Substitution,24525,42.53,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L006,100,Cycle,Base Insertion,24286,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,100,Cycle,Base Deletion,24286,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,101,Cycle,Base Substitution,24559,37.78,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L006,101,Cycle,Base Insertion,24329,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,101,Cycle,Base Deletion,24329,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,102,Cycle,Base Substitution,24556,32.66,30.00,30.74,-0.74,Before
REGRESSION.HCC1395_tumor.L006,102,Cycle,Base Insertion,24300,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,102,Cycle,Base Deletion,24300,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,103,Cycle,Base Substitution,24567,42.81,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L006,103,Cycle,Base Insertion,24315,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,103,Cycle,Base Deletion,24315,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,104,Cycle,Base Substitution,24404,48.66,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L006,104,Cycle,Base Insertion,24172,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,104,Cycle,Base Deletion,24172,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,105,Cycle,Base Substitution,24346,40.00,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L006,105,Cycle,Base Insertion,24110,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,105,Cycle,Base Deletion,24110,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,106,Cycle,Base Substitution,24335,39.69,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L006,106,Cycle,Base Insertion,24114,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,106,Cycle,Base Deletion,24114,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,107,Cycle,Base Substitution,24243,47.27,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L006,107,Cycle,Base Insertion,23975,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,107,Cycle,Base Deletion,23975,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,108,Cycle,Base Substitution,24140,61.51,28.00,30.26,-2.26,Before
REGRESSION.HCC1395_tumor.L006,108,Cycle,Base Insertion,23880,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,108,Cycle,Base Deletion,23880,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,109,Cycle,Base Substitution,24114,49.04,29.00,30.36,-1.36,Before
REGRESSION.HCC1395_tumor.L006,109,Cycle,Base Insertion,23862,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,109,Cycle,Base Deletion,23862,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,11,Cycle,Base Substitution,26789,31.30,31.00,31.33,-0.33,Before
REGRESSION.HCC1395_tumor.L006,11,Cycle,Base Insertion,26789,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,11,Cycle,Base Deletion,26789,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,110,Cycle,Base Substitution,23974,58.43,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L006,110,Cycle,Base Insertion,23721,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,110,Cycle,Base Deletion,23721,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,111,Cycle,Base Substitution,23925,44.63,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L006,111,Cycle,Base Insertion,23676,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,111,Cycle,Base Deletion,23676,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,112,Cycle,Base Substitution,23911,40.95,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L006,112,Cycle,Base Insertion,23644,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,112,Cycle,Base Deletion,23644,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,113,Cycle,Base Substitution,23808,49.97,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L006,113,Cycle,Base Insertion,23524,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,113,Cycle,Base Deletion,23524,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,114,Cycle,Base Substitution,23878,43.15,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L006,114,Cycle,Base Insertion,23547,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,114,Cycle,Base Deletion,23547,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,115,Cycle,Base Substitution,23809,39.74,29.00,30.47,-1.47,Before
REGRESSION.HCC1395_tumor.L006,115,Cycle,Base Insertion,23507,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,115,Cycle,Base Deletion,23507,2.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,116,Cycle,Base Substitution,23762,42.51,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L006,116,Cycle,Base Insertion,23469,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,116,Cycle,Base Deletion,23469,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,117,Cycle,Base Substitution,23770,47.82,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L006,117,Cycle,Base Insertion,23480,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,117,Cycle,Base Deletion,23480,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,118,Cycle,Base Substitution,23576,51.55,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L006,118,Cycle,Base Insertion,23288,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,118,Cycle,Base Deletion,23288,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,119,Cycle,Base Substitution,23503,51.22,29.00,30.25,-1.25,Before
REGRESSION.HCC1395_tumor.L006,119,Cycle,Base Insertion,23207,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,119,Cycle,Base Deletion,23207,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,12,Cycle,Base Substitution,26735,31.22,30.00,30.99,-0.99,Before
REGRESSION.HCC1395_tumor.L006,12,Cycle,Base Insertion,26735,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,12,Cycle,Base Deletion,26735,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,120,Cycle,Base Substitution,23462,42.34,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L006,120,Cycle,Base Insertion,23157,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,120,Cycle,Base Deletion,23157,1.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,121,Cycle,Base Substitution,23441,43.25,28.00,29.72,-1.72,Before
REGRESSION.HCC1395_tumor.L006,121,Cycle,Base Insertion,23150,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,121,Cycle,Base Deletion,23150,2.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,122,Cycle,Base Substitution,23342,41.42,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L006,122,Cycle,Base Insertion,23037,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,122,Cycle,Base Deletion,23037,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,123,Cycle,Base Substitution,23175,46.45,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L006,123,Cycle,Base Insertion,22898,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,123,Cycle,Base Deletion,22898,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,124,Cycle,Base Substitution,23153,51.01,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L006,124,Cycle,Base Insertion,22877,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,124,Cycle,Base Deletion,22877,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,125,Cycle,Base Substitution,23007,35.20,29.00,29.95,-0.95,Before
REGRESSION.HCC1395_tumor.L006,125,Cycle,Base Insertion,22714,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,125,Cycle,Base Deletion,22714,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,126,Cycle,Base Substitution,23004,58.83,28.00,29.60,-1.60,Before
REGRESSION.HCC1395_tumor.L006,126,Cycle,Base Insertion,22716,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,126,Cycle,Base Deletion,22716,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,127,Cycle,Base Substitution,22980,47.92,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L006,127,Cycle,Base Insertion,22700,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,127,Cycle,Base Deletion,22700,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,128,Cycle,Base Substitution,22897,47.32,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L006,128,Cycle,Base Insertion,22611,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,128,Cycle,Base Deletion,22611,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,129,Cycle,Base Substitution,22829,53.78,28.00,29.58,-1.58,Before
REGRESSION.HCC1395_tumor.L006,129,Cycle,Base Insertion,22515,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,129,Cycle,Base Deletion,22515,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,13,Cycle,Base Substitution,26737,37.71,30.00,31.06,-1.06,Before
REGRESSION.HCC1395_tumor.L006,13,Cycle,Base Insertion,26737,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,13,Cycle,Base Deletion,26737,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,130,Cycle,Base Substitution,22708,35.79,29.00,29.96,-0.96,Before
REGRESSION.HCC1395_tumor.L006,130,Cycle,Base Insertion,22410,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,130,Cycle,Base Deletion,22410,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,131,Cycle,Base Substitution,22788,46.73,28.00,29.67,-1.67,Before
REGRESSION.HCC1395_tumor.L006,131,Cycle,Base Insertion,22465,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,131,Cycle,Base Deletion,22465,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,132,Cycle,Base Substitution,22768,45.75,28.00,29.63,-1.63,Before
REGRESSION.HCC1395_tumor.L006,132,Cycle,Base Insertion,22443,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,132,Cycle,Base Deletion,22443,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,133,Cycle,Base Substitution,22604,46.88,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L006,133,Cycle,Base Insertion,22318,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,133,Cycle,Base Deletion,22318,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,134,Cycle,Base Substitution,22549,42.06,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L006,134,Cycle,Base Insertion,22227,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,134,Cycle,Base Deletion,22227,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,135,Cycle,Base Substitution,22547,46.88,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L006,135,Cycle,Base Insertion,22236,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,135,Cycle,Base Deletion,22236,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,136,Cycle,Base Substitution,22338,27.87,30.00,30.24,-0.24,Before
REGRESSION.HCC1395_tumor.L006,136,Cycle,Base Insertion,22004,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,136,Cycle,Base Deletion,22004,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,137,Cycle,Base Substitution,22386,50.45,28.00,29.73,-1.73,Before
REGRESSION.HCC1395_tumor.L006,137,Cycle,Base Insertion,22066,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,137,Cycle,Base Deletion,22066,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,138,Cycle,Base Substitution,22209,41.51,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L006,138,Cycle,Base Insertion,21895,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,138,Cycle,Base Deletion,21895,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,139,Cycle,Base Substitution,22219,38.02,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L006,139,Cycle,Base Insertion,21875,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,139,Cycle,Base Deletion,21875,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,14,Cycle,Base Substitution,26774,34.37,30.00,31.33,-1.33,Before
REGRESSION.HCC1395_tumor.L006,14,Cycle,Base Insertion,26774,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,14,Cycle,Base Deletion,26774,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,140,Cycle,Base Substitution,22081,45.13,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L006,140,Cycle,Base Insertion,21759,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,140,Cycle,Base Deletion,21759,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,141,Cycle,Base Substitution,22021,52.99,28.00,29.64,-1.64,Before
REGRESSION.HCC1395_tumor.L006,141,Cycle,Base Insertion,21700,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,141,Cycle,Base Deletion,21700,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,142,Cycle,Base Substitution,21908,39.93,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L006,142,Cycle,Base Insertion,21538,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,142,Cycle,Base Deletion,21538,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,143,Cycle,Base Substitution,21805,44.41,28.00,29.75,-1.75,Before
REGRESSION.HCC1395_tumor.L006,143,Cycle,Base Insertion,21432,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,143,Cycle,Base Deletion,21432,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,144,Cycle,Base Substitution,21834,41.44,28.00,29.57,-1.57,Before
REGRESSION.HCC1395_tumor.L006,144,Cycle,Base Insertion,21487,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,144,Cycle,Base Deletion,21487,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,145,Cycle,Base Substitution,21697,39.87,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L006,145,Cycle,Base Insertion,21303,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,145,Cycle,Base Deletion,21303,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,146,Cycle,Base Substitution,21527,40.73,28.00,29.51,-1.51,Before
REGRESSION.HCC1395_tumor.L006,146,Cycle,Base Insertion,21187,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,146,Cycle,Base Deletion,21187,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,147,Cycle,Base Substitution,21526,54.85,28.00,29.85,-1.85,Before
REGRESSION.HCC1395_tumor.L006,148,Cycle,Base Substitution,21381,41.96,28.00,29.56,-1.56,Before
REGRESSION.HCC1395_tumor.L006,149,Cycle,Base Substitution,21328,48.39,28.00,29.62,-1.62,Before
REGRESSION.HCC1395_tumor.L006,15,Cycle,Base Substitution,26714,34.19,30.00,31.70,-1.70,Before
REGRESSION.HCC1395_tumor.L006,15,Cycle,Base Insertion,26714,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,15,Cycle,Base Deletion,26714,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,150,Cycle,Base Substitution,21309,47.72,28.00,29.72,-1.72,Before
REGRESSION.HCC1395_tumor.L006,16,Cycle,Base Substitution,26752,28.56,31.00,32.80,-1.80,Before
REGRESSION.HCC1395_tumor.L006,16,Cycle,Base Insertion,26752,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,16,Cycle,Base Deletion,26752,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,17,Cycle,Base Substitution,26663,25.09,32.00,32.89,-0.89,Before
REGRESSION.HCC1395_tumor.L006,17,Cycle,Base Insertion,26663,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,17,Cycle,Base Deletion,26663,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,18,Cycle,Base Substitution,26616,22.32,32.00,32.63,-0.63,Before
REGRESSION.HCC1395_tumor.L006,18,Cycle,Base Insertion,26616,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,18,Cycle,Base Deletion,26616,1.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,19,Cycle,Base Substitution,26529,21.65,32.00,32.68,-0.68,Before
REGRESSION.HCC1395_tumor.L006,19,Cycle,Base Insertion,26529,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,19,Cycle,Base Deletion,26529,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,2,Cycle,Base Substitution,26787,50.93,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L006,20,Cycle,Base Substitution,26649,23.91,32.00,32.65,-0.65,Before
REGRESSION.HCC1395_tumor.L006,20,Cycle,Base Insertion,26649,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,20,Cycle,Base Deletion,26649,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,21,Cycle,Base Substitution,26639,26.97,32.00,33.58,-1.58,Before
REGRESSION.HCC1395_tumor.L006,21,Cycle,Base Insertion,26639,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,21,Cycle,Base Deletion,26639,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,22,Cycle,Base Substitution,26560,20.81,33.00,33.19,-0.19,Before
REGRESSION.HCC1395_tumor.L006,22,Cycle,Base Insertion,26560,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,22,Cycle,Base Deletion,26560,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,23,Cycle,Base Substitution,26586,13.47,33.00,33.15,-0.15,Before
REGRESSION.HCC1395_tumor.L006,23,Cycle,Base Insertion,26586,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,23,Cycle,Base Deletion,26586,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,24,Cycle,Base Substitution,26594,17.79,33.00,33.19,-0.19,Before
REGRESSION.HCC1395_tumor.L006,24,Cycle,Base Insertion,26594,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,24,Cycle,Base Deletion,26594,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,25,Cycle,Base Substitution,26535,29.53,31.00,32.71,-1.71,Before
REGRESSION.HCC1395_tumor.L006,25,Cycle,Base Insertion,26535,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,25,Cycle,Base Deletion,26535,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,26,Cycle,Base Substitution,26647,24.72,31.00,31.52,-0.52,Before
REGRESSION.HCC1395_tumor.L006,26,Cycle,Base Insertion,26647,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,26,Cycle,Base Deletion,26647,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,27,Cycle,Base Substitution,26551,27.81,31.00,31.27,-0.27,Before
REGRESSION.HCC1395_tumor.L006,27,Cycle,Base Insertion,26551,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,27,Cycle,Base Deletion,26551,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,28,Cycle,Base Substitution,26664,34.50,30.00,31.77,-1.77,Before
REGRESSION.HCC1395_tumor.L006,28,Cycle,Base Insertion,26664,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,28,Cycle,Base Deletion,26664,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,29,Cycle,Base Substitution,26539,35.20,30.00,31.34,-1.34,Before
REGRESSION.HCC1395_tumor.L006,29,Cycle,Base Insertion,26539,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,29,Cycle,Base Deletion,26539,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,3,Cycle,Base Substitution,26892,47.06,30.00,31.07,-1.07,Before
REGRESSION.HCC1395_tumor.L006,30,Cycle,Base Substitution,26664,31.44,31.00,31.67,-0.67,Before
REGRESSION.HCC1395_tumor.L006,30,Cycle,Base Insertion,26662,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,30,Cycle,Base Deletion,26662,2.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,31,Cycle,Base Substitution,26670,29.21,31.00,32.11,-1.11,Before
REGRESSION.HCC1395_tumor.L006,31,Cycle,Base Insertion,26668,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,31,Cycle,Base Deletion,26668,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,32,Cycle,Base Substitution,26398,43.61,30.00,31.05,-1.05,Before
REGRESSION.HCC1395_tumor.L006,32,Cycle,Base Insertion,26396,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,32,Cycle,Base Deletion,26396,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,33,Cycle,Base Substitution,26477,28.67,31.00,31.50,-0.50,Before
REGRESSION.HCC1395_tumor.L006,33,Cycle,Base Insertion,26476,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,33,Cycle,Base Deletion,26476,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,34,Cycle,Base Substitution,26509,24.36,31.00,31.45,-0.45,Before
REGRESSION.HCC1395_tumor.L006,34,Cycle,Base Insertion,26509,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,34,Cycle,Base Deletion,26509,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,35,Cycle,Base Substitution,26484,29.82,31.00,31.73,-0.73,Before
REGRESSION.HCC1395_tumor.L006,35,Cycle,Base Insertion,26484,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,35,Cycle,Base Deletion,26484,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,36,Cycle,Base Substitution,26533,26.71,31.00,31.82,-0.82,Before
REGRESSION.HCC1395_tumor.L006,36,Cycle,Base Insertion,26533,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,36,Cycle,Base Deletion,26533,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,37,Cycle,Base Substitution,26475,23.25,31.00,31.90,-0.90,Before
REGRESSION.HCC1395_tumor.L006,37,Cycle,Base Insertion,26474,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,37,Cycle,Base Deletion,26474,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,38,Cycle,Base Substitution,26528,24.01,31.00,31.84,-0.84,Before
REGRESSION.HCC1395_tumor.L006,38,Cycle,Base Insertion,26526,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,38,Cycle,Base Deletion,26526,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,39,Cycle,Base Substitution,26461,25.33,31.00,31.90,-0.90,Before
REGRESSION.HCC1395_tumor.L006,39,Cycle,Base Insertion,26460,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,39,Cycle,Base Deletion,26460,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,4,Cycle,Base Substitution,26909,61.34,29.00,31.02,-2.02,Before
REGRESSION.HCC1395_tumor.L006,40,Cycle,Base Substitution,26388,20.94,31.00,31.66,-0.66,Before
REGRESSION.HCC1395_tumor.L006,40,Cycle,Base Insertion,26386,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,40,Cycle,Base Deletion,26386,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,41,Cycle,Base Substitution,26523,25.55,31.00,31.46,-0.46,Before
REGRESSION.HCC1395_tumor.L006,41,Cycle,Base Insertion,26520,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,41,Cycle,Base Deletion,26520,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,42,Cycle,Base Substitution,26302,28.27,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L006,42,Cycle,Base Insertion,26301,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,42,Cycle,Base Deletion,26301,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,43,Cycle,Base Substitution,26402,37.09,30.00,31.19,-1.19,Before
REGRESSION.HCC1395_tumor.L006,43,Cycle,Base Insertion,26401,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,43,Cycle,Base Deletion,26401,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,44,Cycle,Base Substitution,26406,28.79,31.00,31.49,-0.49,Before
REGRESSION.HCC1395_tumor.L006,44,Cycle,Base Insertion,26406,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,44,Cycle,Base Deletion,26406,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,45,Cycle,Base Substitution,26412,32.69,30.00,31.66,-1.66,Before
REGRESSION.HCC1395_tumor.L006,45,Cycle,Base Insertion,26410,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,45,Cycle,Base Deletion,26410,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,46,Cycle,Base Substitution,26338,39.48,30.00,31.34,-1.34,Before
REGRESSION.HCC1395_tumor.L006,46,Cycle,Base Insertion,26334,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,46,Cycle,Base Deletion,26334,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,47,Cycle,Base Substitution,26405,31.95,30.00,31.65,-1.65,Before
REGRESSION.HCC1395_tumor.L006,47,Cycle,Base Insertion,26398,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,47,Cycle,Base Deletion,26398,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,48,Cycle,Base Substitution,26349,26.06,31.00,31.61,-0.61,Before
REGRESSION.HCC1395_tumor.L006,48,Cycle,Base Insertion,26340,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,48,Cycle,Base Deletion,26340,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,49,Cycle,Base Substitution,26410,31.63,30.00,31.49,-1.49,Before
REGRESSION.HCC1395_tumor.L006,49,Cycle,Base Insertion,26404,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,49,Cycle,Base Deletion,26404,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,5,Cycle,Base Substitution,26824,42.10,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L006,5,Cycle,Base Insertion,26824,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,5,Cycle,Base Deletion,26824,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,50,Cycle,Base Substitution,26299,27.83,31.00,31.84,-0.84,Before
REGRESSION.HCC1395_tumor.L006,50,Cycle,Base Insertion,26289,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,50,Cycle,Base Deletion,26289,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,51,Cycle,Base Substitution,26291,51.10,30.00,31.64,-1.64,Before
REGRESSION.HCC1395_tumor.L006,51,Cycle,Base Insertion,26280,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,51,Cycle,Base Deletion,26280,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,52,Cycle,Base Substitution,26330,31.46,31.00,31.57,-0.57,Before
REGRESSION.HCC1395_tumor.L006,52,Cycle,Base Insertion,26313,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,52,Cycle,Base Deletion,26313,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,53,Cycle,Base Substitution,26384,35.85,30.00,31.14,-1.14,Before
REGRESSION.HCC1395_tumor.L006,53,Cycle,Base Insertion,26361,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,53,Cycle,Base Deletion,26361,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,54,Cycle,Base Substitution,26275,33.18,30.00,31.90,-1.90,Before
REGRESSION.HCC1395_tumor.L006,54,Cycle,Base Insertion,26247,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,54,Cycle,Base Deletion,26247,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,55,Cycle,Base Substitution,26280,28.10,31.00,31.71,-0.71,Before
REGRESSION.HCC1395_tumor.L006,55,Cycle,Base Insertion,26249,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,55,Cycle,Base Deletion,26249,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,56,Cycle,Base Substitution,26393,40.18,30.00,31.68,-1.68,Before
REGRESSION.HCC1395_tumor.L006,56,Cycle,Base Insertion,26354,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,56,Cycle,Base Deletion,26354,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,57,Cycle,Base Substitution,26184,36.09,30.00,31.26,-1.26,Before
REGRESSION.HCC1395_tumor.L006,57,Cycle,Base Insertion,26151,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,57,Cycle,Base Deletion,26151,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,58,Cycle,Base Substitution,26222,33.64,30.00,31.86,-1.86,Before
REGRESSION.HCC1395_tumor.L006,58,Cycle,Base Insertion,26188,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,58,Cycle,Base Deletion,26188,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,59,Cycle,Base Substitution,26348,32.81,30.00,31.39,-1.39,Before
REGRESSION.HCC1395_tumor.L006,59,Cycle,Base Insertion,26305,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,59,Cycle,Base Deletion,26305,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,6,Cycle,Base Substitution,26892,30.74,31.00,31.03,-0.03,Before
REGRESSION.HCC1395_tumor.L006,6,Cycle,Base Insertion,26892,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,6,Cycle,Base Deletion,26892,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,60,Cycle,Base Substitution,26152,30.92,31.00,31.15,-0.15,Before
REGRESSION.HCC1395_tumor.L006,60,Cycle,Base Insertion,26102,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,60,Cycle,Base Deletion,26102,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,61,Cycle,Base Substitution,26221,46.65,30.00,31.67,-1.67,Before
REGRESSION.HCC1395_tumor.L006,61,Cycle,Base Insertion,26163,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,61,Cycle,Base Deletion,26163,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,62,Cycle,Base Substitution,26199,33.47,30.00,31.45,-1.45,Before
REGRESSION.HCC1395_tumor.L006,62,Cycle,Base Insertion,26138,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,62,Cycle,Base Deletion,26138,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,63,Cycle,Base Substitution,26160,41.93,30.00,31.08,-1.08,Before
REGRESSION.HCC1395_tumor.L006,63,Cycle,Base Insertion,26093,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,63,Cycle,Base Deletion,26093,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,64,Cycle,Base Substitution,26170,32.46,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L006,64,Cycle,Base Insertion,26096,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,64,Cycle,Base Deletion,26096,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,65,Cycle,Base Substitution,26146,35.70,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L006,65,Cycle,Base Insertion,26080,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,65,Cycle,Base Deletion,26080,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,66,Cycle,Base Substitution,26114,27.84,31.00,31.61,-0.61,Before
REGRESSION.HCC1395_tumor.L006,66,Cycle,Base Insertion,26031,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,66,Cycle,Base Deletion,26031,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,67,Cycle,Base Substitution,26053,35.51,30.00,31.40,-1.40,Before
REGRESSION.HCC1395_tumor.L006,67,Cycle,Base Insertion,25969,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,67,Cycle,Base Deletion,25969,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,68,Cycle,Base Substitution,26083,33.78,30.00,31.19,-1.19,Before
REGRESSION.HCC1395_tumor.L006,68,Cycle,Base Insertion,25998,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,68,Cycle,Base Deletion,25998,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,69,Cycle,Base Substitution,26197,29.14,31.00,31.41,-0.41,Before
REGRESSION.HCC1395_tumor.L006,69,Cycle,Base Insertion,26112,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,69,Cycle,Base Deletion,26112,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,7,Cycle,Base Substitution,26703,28.37,31.00,31.13,-0.13,Before
REGRESSION.HCC1395_tumor.L006,7,Cycle,Base Insertion,26703,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,7,Cycle,Base Deletion,26703,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,70,Cycle,Base Substitution,25925,36.37,30.00,31.23,-1.23,Before
REGRESSION.HCC1395_tumor.L006,70,Cycle,Base Insertion,25840,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,70,Cycle,Base Deletion,25840,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,71,Cycle,Base Substitution,25951,35.01,30.00,31.87,-1.87,Before
REGRESSION.HCC1395_tumor.L006,71,Cycle,Base Insertion,25850,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,71,Cycle,Base Deletion,25850,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,72,Cycle,Base Substitution,25957,26.61,31.00,31.44,-0.44,Before
REGRESSION.HCC1395_tumor.L006,72,Cycle,Base Insertion,25854,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,72,Cycle,Base Deletion,25854,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,73,Cycle,Base Substitution,25950,40.67,29.00,31.00,-2.00,Before
REGRESSION.HCC1395_tumor.L006,73,Cycle,Base Insertion,25832,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,73,Cycle,Base Deletion,25832,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,74,Cycle,Base Substitution,25831,36.82,30.00,31.32,-1.32,Before
REGRESSION.HCC1395_tumor.L006,74,Cycle,Base Insertion,25706,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,74,Cycle,Base Deletion,25706,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,75,Cycle,Base Substitution,25866,35.00,30.00,31.14,-1.14,Before
REGRESSION.HCC1395_tumor.L006,75,Cycle,Base Insertion,25741,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,75,Cycle,Base Deletion,25741,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,76,Cycle,Base Substitution,25842,39.57,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L006,76,Cycle,Base Insertion,25711,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,76,Cycle,Base Deletion,25711,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,77,Cycle,Base Substitution,25730,37.42,30.00,31.07,-1.07,Before
REGRESSION.HCC1395_tumor.L006,77,Cycle,Base Insertion,25599,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,77,Cycle,Base Deletion,25599,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,78,Cycle,Base Substitution,25730,40.83,29.00,30.98,-1.98,Before
REGRESSION.HCC1395_tumor.L006,78,Cycle,Base Insertion,25585,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,78,Cycle,Base Deletion,25585,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,79,Cycle,Base Substitution,25734,51.77,30.00,31.09,-1.09,Before
REGRESSION.HCC1395_tumor.L006,79,Cycle,Base Insertion,25583,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,79,Cycle,Base Deletion,25583,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,8,Cycle,Base Substitution,26717,39.70,30.00,31.03,-1.03,Before
REGRESSION.HCC1395_tumor.L006,8,Cycle,Base Insertion,26717,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,8,Cycle,Base Deletion,26717,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,80,Cycle,Base Substitution,25718,30.85,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L006,80,Cycle,Base Insertion,25548,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,80,Cycle,Base Deletion,25548,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,81,Cycle,Base Substitution,25553,34.63,30.00,30.87,-0.87,Before
REGRESSION.HCC1395_tumor.L006,81,Cycle,Base Insertion,25375,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,81,Cycle,Base Deletion,25375,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,82,Cycle,Base Substitution,25596,32.08,30.00,31.00,-1.00,Before
REGRESSION.HCC1395_tumor.L006,82,Cycle,Base Insertion,25417,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,82,Cycle,Base Deletion,25417,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,83,Cycle,Base Substitution,25486,34.37,30.00,30.89,-0.89,Before
REGRESSION.HCC1395_tumor.L006,83,Cycle,Base Insertion,25288,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,83,Cycle,Base Deletion,25288,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,84,Cycle,Base Substitution,25514,45.13,29.00,30.96,-1.96,Before
REGRESSION.HCC1395_tumor.L006,84,Cycle,Base Insertion,25316,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,84,Cycle,Base Deletion,25316,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,85,Cycle,Base Substitution,25425,41.60,30.00,31.18,-1.18,Before
REGRESSION.HCC1395_tumor.L006,85,Cycle,Base Insertion,25233,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,85,Cycle,Base Deletion,25233,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,86,Cycle,Base Substitution,25415,39.24,30.00,31.13,-1.13,Before
REGRESSION.HCC1395_tumor.L006,86,Cycle,Base Insertion,25230,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,86,Cycle,Base Deletion,25230,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,87,Cycle,Base Substitution,25380,34.97,30.00,30.69,-0.69,Before
REGRESSION.HCC1395_tumor.L006,87,Cycle,Base Insertion,25185,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,87,Cycle,Base Deletion,25185,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,88,Cycle,Base Substitution,25277,34.81,30.00,30.84,-0.84,Before
REGRESSION.HCC1395_tumor.L006,88,Cycle,Base Insertion,25077,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,88,Cycle,Base Deletion,25077,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,89,Cycle,Base Substitution,25286,43.95,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L006,89,Cycle,Base Insertion,25080,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,89,Cycle,Base Deletion,25080,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,9,Cycle,Base Substitution,26771,35.57,30.00,30.93,-0.93,Before
REGRESSION.HCC1395_tumor.L006,9,Cycle,Base Insertion,26771,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,9,Cycle,Base Deletion,26771,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,90,Cycle,Base Substitution,25233,42.77,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L006,90,Cycle,Base Insertion,25029,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,90,Cycle,Base Deletion,25029,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,91,Cycle,Base Substitution,25282,45.89,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L006,91,Cycle,Base Insertion,25081,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,91,Cycle,Base Deletion,25081,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,92,Cycle,Base Substitution,25036,34.21,30.00,30.75,-0.75,Before
REGRESSION.HCC1395_tumor.L006,92,Cycle,Base Insertion,24812,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,92,Cycle,Base Deletion,24812,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,93,Cycle,Base Substitution,24881,41.94,29.00,30.87,-1.87,Before
REGRESSION.HCC1395_tumor.L006,93,Cycle,Base Insertion,24657,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,93,Cycle,Base Deletion,24657,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,94,Cycle,Base Substitution,25021,43.99,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L006,94,Cycle,Base Insertion,24787,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,94,Cycle,Base Deletion,24787,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,95,Cycle,Base Substitution,24850,26.68,30.00,30.91,-0.91,Before
REGRESSION.HCC1395_tumor.L006,95,Cycle,Base Insertion,24593,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,95,Cycle,Base Deletion,24593,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,96,Cycle,Base Substitution,24794,39.37,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L006,96,Cycle,Base Insertion,24536,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,96,Cycle,Base Deletion,24536,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,97,Cycle,Base Substitution,24775,39.86,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L006,97,Cycle,Base Insertion,24524,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,97,Cycle,Base Deletion,24524,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,98,Cycle,Base Substitution,24725,40.46,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L006,98,Cycle,Base Insertion,24481,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,98,Cycle,Base Deletion,24481,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,99,Cycle,Base Substitution,24681,45.63,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L006,99,Cycle,Base Insertion,24443,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,99,Cycle,Base Deletion,24443,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,12,QualityScore,Base Substitution,80107,7732.55,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L006,24,QualityScore,Base Substitution,196272,735.44,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L006,40,QualityScore,Base Substitution,7226980,5427.94,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L006,45,QualityScore,Base Insertion,7503359,127.44,47.00,45.00,2.00,Before
REGRESSION.HCC1395_tumor.L006,45,QualityScore,Base Deletion,7503359,355.42,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L007,AA,Context,Base Substitution,525729,1307.89,26.00,29.74,-3.74,Before
REGRESSION.HCC1395_tumor.L007,AAA,Context,Base Insertion,178084,22.53,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L007,AAA,Context,Base Deletion,178084,64.31,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L007,AAC,Context,Base Insertion,86227,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AAC,Context,Base Deletion,86227,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AAG,Context,Base Insertion,133741,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AAG,Context,Base Deletion,133741,4.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AAT,Context,Base Insertion,102304,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AAT,Context,Base Deletion,102304,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AC,Context,Base Substitution,358696,1194.15,25.00,28.60,-3.60,Before
REGRESSION.HCC1395_tumor.L007,ACA,Context,Base Insertion,132700,4.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ACA,Context,Base Deletion,132700,4.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ACC,Context,Base Insertion,105301,2.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ACC,Context,Base Deletion,105301,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ACG,Context,Base Insertion,20986,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ACG,Context,Base Deletion,20986,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ACT,Context,Base Insertion,105570,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ACT,Context,Base Deletion,105570,6.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AG,Context,Base Substitution,561597,583.96,30.00,31.82,-1.82,Before
REGRESSION.HCC1395_tumor.L007,AGA,Context,Base Insertion,151971,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AGA,Context,Base Deletion,151971,4.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AGC,Context,Base Insertion,140039,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AGC,Context,Base Deletion,140039,5.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AGG,Context,Base Insertion,163282,4.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AGG,Context,Base Deletion,163282,4.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AGT,Context,Base Insertion,102494,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AGT,Context,Base Deletion,102494,2.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,AT,Context,Base Substitution,372161,465.78,29.00,32.09,-3.09,Before
REGRESSION.HCC1395_tumor.L007,ATA,Context,Base Insertion,75474,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ATA,Context,Base Deletion,75474,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ATC,Context,Base Insertion,79250,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ATC,Context,Base Deletion,79250,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ATG,Context,Base Insertion,115442,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ATG,Context,Base Deletion,115442,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ATT,Context,Base Insertion,110004,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,ATT,Context,Base Deletion,110004,2.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CA,Context,Base Substitution,595135,1284.01,27.00,29.87,-2.87,Before
REGRESSION.HCC1395_tumor.L007,CAA,Context,Base Insertion,112411,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CAA,Context,Base Deletion,112411,3.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CAC,Context,Base Insertion,125115,4.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CAC,Context,Base Deletion,125115,4.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CAG,Context,Base Insertion,213537,3.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CAG,Context,Base Deletion,213537,10.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CAT,Context,Base Insertion,112025,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CAT,Context,Base Deletion,112025,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CC,Context,Base Substitution,552787,1734.77,25.00,28.90,-3.90,Before
REGRESSION.HCC1395_tumor.L007,CCA,Context,Base Insertion,176069,2.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CCA,Context,Base Deletion,176069,2.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CCC,Context,Base Insertion,151583,4.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CCC,Context,Base Deletion,151583,9.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CCG,Context,Base Insertion,38081,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CCG,Context,Base Deletion,38081,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CCT,Context,Base Insertion,178215,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CCT,Context,Base Deletion,178215,6.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CG,Context,Base Substitution,114960,346.41,26.00,29.88,-3.88,Before
REGRESSION.HCC1395_tumor.L007,CGA,Context,Base Insertion,44860,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CGA,Context,Base Deletion,44860,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CGC,Context,Base Insertion,64124,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CGC,Context,Base Deletion,64124,2.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CGG,Context,Base Insertion,78371,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CGG,Context,Base Deletion,78371,3.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CGT,Context,Base Insertion,49460,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CGT,Context,Base Deletion,49460,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CT,Context,Base Substitution,598434,410.78,32.00,32.56,-0.56,Before
REGRESSION.HCC1395_tumor.L007,CTA,Context,Base Insertion,58736,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CTA,Context,Base Deletion,58736,4.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CTC,Context,Base Insertion,147007,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CTC,Context,Base Deletion,147007,9.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CTG,Context,Base Insertion,214557,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CTG,Context,Base Deletion,214557,6.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CTT,Context,Base Insertion,146301,6.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,CTT,Context,Base Deletion,146301,5.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GA,Context,Base Substitution,497444,843.78,28.00,29.55,-1.55,Before
REGRESSION.HCC1395_tumor.L007,GAA,Context,Base Insertion,142175,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GAA,Context,Base Deletion,142175,2.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GAC,Context,Base Insertion,84319,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GAC,Context,Base Deletion,84319,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GAG,Context,Base Insertion,149787,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GAG,Context,Base Deletion,149787,3.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GAT,Context,Base Insertion,83978,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GAT,Context,Base Deletion,83978,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GC,Context,Base Substitution,489127,1132.05,27.00,30.28,-3.28,Before
REGRESSION.HCC1395_tumor.L007,GCA,Context,Base Insertion,148621,3.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GCA,Context,Base Deletion,148621,2.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GCC,Context,Base Insertion,146740,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GCC,Context,Base Deletion,146740,7.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GCG,Context,Base Insertion,36682,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GCG,Context,Base Deletion,36682,2.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GCT,Context,Base Insertion,156315,2.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GCT,Context,Base Deletion,156315,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GG,Context,Base Substitution,578128,772.85,29.00,31.73,-2.73,Before
REGRESSION.HCC1395_tumor.L007,GGA,Context,Base Insertion,156695,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GGA,Context,Base Deletion,156695,5.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GGC,Context,Base Insertion,145030,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GGC,Context,Base Deletion,145030,4.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GGG,Context,Base Insertion,158506,6.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GGG,Context,Base Deletion,158506,9.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GGT,Context,Base Insertion,115600,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GGT,Context,Base Deletion,115600,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GT,Context,Base Substitution,409079,674.72,28.00,32.11,-4.11,Before
REGRESSION.HCC1395_tumor.L007,GTA,Context,Base Insertion,66402,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GTA,Context,Base Deletion,66402,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GTC,Context,Base Insertion,91462,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GTC,Context,Base Deletion,91462,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GTG,Context,Base Insertion,140186,3.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GTG,Context,Base Deletion,140186,4.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GTT,Context,Base Insertion,100240,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,GTT,Context,Base Deletion,100240,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TA,Context,Base Substitution,290906,834.66,26.00,29.70,-3.70,Before
REGRESSION.HCC1395_tumor.L007,TAA,Context,Base Insertion,88605,2.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TAA,Context,Base Deletion,88605,4.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TAC,Context,Base Insertion,60677,0.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TAC,Context,Base Deletion,60677,4.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TAG,Context,Base Insertion,60244,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TAG,Context,Base Deletion,60244,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TAT,Context,Base Insertion,71097,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TAT,Context,Base Deletion,71097,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TC,Context,Base Substitution,451210,1010.94,27.00,30.48,-3.48,Before
REGRESSION.HCC1395_tumor.L007,TCA,Context,Base Insertion,133050,2.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TCA,Context,Base Deletion,133050,5.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TCC,Context,Base Insertion,145428,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TCC,Context,Base Deletion,145428,2.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TCG,Context,Base Insertion,18366,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TCG,Context,Base Deletion,18366,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TCT,Context,Base Insertion,154350,2.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TCT,Context,Base Deletion,154350,9.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TG,Context,Base Substitution,588327,459.49,31.00,31.82,-0.82,Before
REGRESSION.HCC1395_tumor.L007,TGA,Context,Base Insertion,140049,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TGA,Context,Base Deletion,140049,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TGC,Context,Base Insertion,136803,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TGC,Context,Base Deletion,136803,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TGG,Context,Base Insertion,173603,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TGG,Context,Base Deletion,173603,2.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TGT,Context,Base Insertion,138732,2.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TGT,Context,Base Deletion,138732,4.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TT,Context,Base Substitution,540859,685.29,29.00,32.96,-3.96,Before
REGRESSION.HCC1395_tumor.L007,TTA,Context,Base Insertion,88052,3.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TTA,Context,Base Deletion,88052,3.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TTC,Context,Base Insertion,130832,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TTC,Context,Base Deletion,130832,5.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TTG,Context,Base Insertion,113873,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TTG,Context,Base Deletion,113873,2.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,TTT,Context,Base Insertion,180677,19.17,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L007,TTT,Context,Base Deletion,180677,58.44,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L007,-1,Cycle,Base Substitution,26794,97.87,25.00,25.85,-0.85,Before
REGRESSION.HCC1395_tumor.L007,-10,Cycle,Base Substitution,27066,41.09,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L007,-10,Cycle,Base Insertion,27066,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-10,Cycle,Base Deletion,27066,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-100,Cycle,Base Substitution,24965,34.68,30.00,30.34,-0.34,Before
REGRESSION.HCC1395_tumor.L007,-100,Cycle,Base Insertion,24717,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-100,Cycle,Base Deletion,24717,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-101,Cycle,Base Substitution,24790,47.31,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L007,-101,Cycle,Base Insertion,24544,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-101,Cycle,Base Deletion,24544,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-102,Cycle,Base Substitution,24840,39.81,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L007,-102,Cycle,Base Insertion,24579,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-102,Cycle,Base Deletion,24579,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-103,Cycle,Base Substitution,24752,43.34,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L007,-103,Cycle,Base Insertion,24513,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-103,Cycle,Base Deletion,24513,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-104,Cycle,Base Substitution,24806,33.96,30.00,30.45,-0.45,Before
REGRESSION.HCC1395_tumor.L007,-104,Cycle,Base Insertion,24538,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-104,Cycle,Base Deletion,24538,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-105,Cycle,Base Substitution,24659,46.01,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L007,-105,Cycle,Base Insertion,24378,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-105,Cycle,Base Deletion,24378,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-106,Cycle,Base Substitution,24577,44.67,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L007,-106,Cycle,Base Insertion,24288,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-106,Cycle,Base Deletion,24288,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-107,Cycle,Base Substitution,24547,30.95,30.00,30.31,-0.31,Before
REGRESSION.HCC1395_tumor.L007,-107,Cycle,Base Insertion,24252,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-107,Cycle,Base Deletion,24252,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-108,Cycle,Base Substitution,24520,34.50,30.00,30.29,-0.29,Before
REGRESSION.HCC1395_tumor.L007,-108,Cycle,Base Insertion,24237,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-108,Cycle,Base Deletion,24237,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-109,Cycle,Base Substitution,24392,45.47,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L007,-109,Cycle,Base Insertion,24107,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-109,Cycle,Base Deletion,24107,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-11,Cycle,Base Substitution,26970,39.48,30.00,31.63,-1.63,Before
REGRESSION.HCC1395_tumor.L007,-11,Cycle,Base Insertion,26970,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-11,Cycle,Base Deletion,26970,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-110,Cycle,Base Substitution,24322,40.38,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L007,-110,Cycle,Base Insertion,24050,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-110,Cycle,Base Deletion,24050,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-111,Cycle,Base Substitution,24212,37.64,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L007,-111,Cycle,Base Insertion,23943,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-111,Cycle,Base Deletion,23943,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-112,Cycle,Base Substitution,24284,43.53,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L007,-112,Cycle,Base Insertion,24001,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-112,Cycle,Base Deletion,24001,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-113,Cycle,Base Substitution,24189,54.15,29.00,30.10,-1.10,Before
REGRESSION.HCC1395_tumor.L007,-113,Cycle,Base Insertion,23910,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-113,Cycle,Base Deletion,23910,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-114,Cycle,Base Substitution,24120,53.16,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L007,-114,Cycle,Base Insertion,23834,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-114,Cycle,Base Deletion,23834,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-115,Cycle,Base Substitution,24013,51.94,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L007,-115,Cycle,Base Insertion,23713,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-115,Cycle,Base Deletion,23713,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-116,Cycle,Base Substitution,23945,45.56,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L007,-116,Cycle,Base Insertion,23646,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-116,Cycle,Base Deletion,23646,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-117,Cycle,Base Substitution,23765,53.53,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L007,-117,Cycle,Base Insertion,23485,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-117,Cycle,Base Deletion,23485,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-118,Cycle,Base Substitution,23741,51.19,28.00,29.74,-1.74,Before
REGRESSION.HCC1395_tumor.L007,-118,Cycle,Base Insertion,23440,0.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-118,Cycle,Base Deletion,23440,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-119,Cycle,Base Substitution,23662,58.22,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L007,-119,Cycle,Base Insertion,23385,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-119,Cycle,Base Deletion,23385,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-12,Cycle,Base Substitution,27095,34.27,30.00,31.84,-1.84,Before
REGRESSION.HCC1395_tumor.L007,-12,Cycle,Base Insertion,27095,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-12,Cycle,Base Deletion,27095,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-120,Cycle,Base Substitution,23613,57.94,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L007,-120,Cycle,Base Insertion,23323,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-120,Cycle,Base Deletion,23323,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-121,Cycle,Base Substitution,23415,51.94,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L007,-121,Cycle,Base Insertion,23114,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-121,Cycle,Base Deletion,23114,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-122,Cycle,Base Substitution,23528,44.35,28.00,29.89,-1.89,Before
REGRESSION.HCC1395_tumor.L007,-122,Cycle,Base Insertion,23235,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-122,Cycle,Base Deletion,23235,1.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-123,Cycle,Base Substitution,23533,45.35,28.00,29.75,-1.75,Before
REGRESSION.HCC1395_tumor.L007,-123,Cycle,Base Insertion,23216,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-123,Cycle,Base Deletion,23216,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-124,Cycle,Base Substitution,23434,45.15,28.00,29.86,-1.86,Before
REGRESSION.HCC1395_tumor.L007,-124,Cycle,Base Insertion,23115,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-124,Cycle,Base Deletion,23115,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-125,Cycle,Base Substitution,23273,38.91,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L007,-125,Cycle,Base Insertion,22963,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-125,Cycle,Base Deletion,22963,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-126,Cycle,Base Substitution,23239,43.90,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L007,-126,Cycle,Base Insertion,22942,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-126,Cycle,Base Deletion,22942,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-127,Cycle,Base Substitution,23180,56.00,28.00,29.82,-1.82,Before
REGRESSION.HCC1395_tumor.L007,-127,Cycle,Base Insertion,22865,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-127,Cycle,Base Deletion,22865,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-128,Cycle,Base Substitution,23176,43.83,28.00,29.65,-1.65,Before
REGRESSION.HCC1395_tumor.L007,-128,Cycle,Base Insertion,22866,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-128,Cycle,Base Deletion,22866,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-129,Cycle,Base Substitution,23058,35.73,29.00,29.93,-0.93,Before
REGRESSION.HCC1395_tumor.L007,-129,Cycle,Base Insertion,22735,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-129,Cycle,Base Deletion,22735,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-13,Cycle,Base Substitution,26959,41.43,30.00,31.34,-1.34,Before
REGRESSION.HCC1395_tumor.L007,-13,Cycle,Base Insertion,26959,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-13,Cycle,Base Deletion,26959,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-130,Cycle,Base Substitution,23001,55.71,28.00,29.74,-1.74,Before
REGRESSION.HCC1395_tumor.L007,-130,Cycle,Base Insertion,22661,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-130,Cycle,Base Deletion,22661,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-131,Cycle,Base Substitution,23024,43.78,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L007,-131,Cycle,Base Insertion,22676,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-131,Cycle,Base Deletion,22676,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-132,Cycle,Base Substitution,22852,43.02,28.00,29.72,-1.72,Before
REGRESSION.HCC1395_tumor.L007,-132,Cycle,Base Insertion,22503,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-132,Cycle,Base Deletion,22503,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-133,Cycle,Base Substitution,22870,43.91,28.00,29.60,-1.60,Before
REGRESSION.HCC1395_tumor.L007,-133,Cycle,Base Insertion,22543,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-133,Cycle,Base Deletion,22543,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-134,Cycle,Base Substitution,22718,47.03,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L007,-134,Cycle,Base Insertion,22376,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-134,Cycle,Base Deletion,22376,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-135,Cycle,Base Substitution,22669,44.02,28.00,29.68,-1.68,Before
REGRESSION.HCC1395_tumor.L007,-135,Cycle,Base Insertion,22350,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-135,Cycle,Base Deletion,22350,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-136,Cycle,Base Substitution,22562,46.08,28.00,29.68,-1.68,Before
REGRESSION.HCC1395_tumor.L007,-136,Cycle,Base Insertion,22231,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-136,Cycle,Base Deletion,22231,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-137,Cycle,Base Substitution,22513,52.13,28.00,29.98,-1.98,Before
REGRESSION.HCC1395_tumor.L007,-137,Cycle,Base Insertion,22172,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-137,Cycle,Base Deletion,22172,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-138,Cycle,Base Substitution,22440,41.35,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L007,-138,Cycle,Base Insertion,22104,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-138,Cycle,Base Deletion,22104,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-139,Cycle,Base Substitution,22275,40.23,28.00,29.88,-1.88,Before
REGRESSION.HCC1395_tumor.L007,-139,Cycle,Base Insertion,21910,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-139,Cycle,Base Deletion,21910,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-14,Cycle,Base Substitution,26998,53.75,30.00,31.50,-1.50,Before
REGRESSION.HCC1395_tumor.L007,-14,Cycle,Base Insertion,26998,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-14,Cycle,Base Deletion,26998,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-140,Cycle,Base Substitution,22241,47.07,28.00,29.66,-1.66,Before
REGRESSION.HCC1395_tumor.L007,-140,Cycle,Base Insertion,21883,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-140,Cycle,Base Deletion,21883,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-141,Cycle,Base Substitution,22260,40.26,28.00,29.65,-1.65,Before
REGRESSION.HCC1395_tumor.L007,-141,Cycle,Base Insertion,21891,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-141,Cycle,Base Deletion,21891,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-142,Cycle,Base Substitution,22102,37.73,29.00,29.88,-0.88,Before
REGRESSION.HCC1395_tumor.L007,-142,Cycle,Base Insertion,21705,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-142,Cycle,Base Deletion,21705,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-143,Cycle,Base Substitution,21961,29.04,29.00,29.77,-0.77,Before
REGRESSION.HCC1395_tumor.L007,-143,Cycle,Base Insertion,21548,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-143,Cycle,Base Deletion,21548,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-144,Cycle,Base Substitution,21959,29.34,29.00,29.57,-0.57,Before
REGRESSION.HCC1395_tumor.L007,-144,Cycle,Base Insertion,21485,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-144,Cycle,Base Deletion,21485,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-145,Cycle,Base Substitution,21849,41.62,28.00,29.96,-1.96,Before
REGRESSION.HCC1395_tumor.L007,-145,Cycle,Base Insertion,16823,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-145,Cycle,Base Deletion,16823,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-146,Cycle,Base Substitution,21639,67.53,28.00,30.10,-2.10,Before
REGRESSION.HCC1395_tumor.L007,-146,Cycle,Base Insertion,16677,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-146,Cycle,Base Deletion,16677,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-147,Cycle,Base Substitution,21643,232.47,23.00,29.88,-6.88,Before
REGRESSION.HCC1395_tumor.L007,-148,Cycle,Base Substitution,21501,824.53,16.00,29.87,-13.87,Before
REGRESSION.HCC1395_tumor.L007,-149,Cycle,Base Substitution,13325,753.04,14.00,30.68,-16.68,Before
REGRESSION.HCC1395_tumor.L007,-15,Cycle,Base Substitution,27007,41.60,30.00,31.53,-1.53,Before
REGRESSION.HCC1395_tumor.L007,-15,Cycle,Base Insertion,27007,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-15,Cycle,Base Deletion,27007,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-150,Cycle,Base Substitution,4705,7.61,30.00,30.68,-0.68,Before
REGRESSION.HCC1395_tumor.L007,-16,Cycle,Base Substitution,27094,39.00,30.00,31.60,-1.60,Before
REGRESSION.HCC1395_tumor.L007,-16,Cycle,Base Insertion,27094,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-16,Cycle,Base Deletion,27094,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-17,Cycle,Base Substitution,27004,43.58,30.00,31.99,-1.99,Before
REGRESSION.HCC1395_tumor.L007,-17,Cycle,Base Insertion,27004,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-17,Cycle,Base Deletion,27004,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-18,Cycle,Base Substitution,27053,36.16,30.00,31.85,-1.85,Before
REGRESSION.HCC1395_tumor.L007,-18,Cycle,Base Insertion,27053,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-18,Cycle,Base Deletion,27053,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-19,Cycle,Base Substitution,27095,46.52,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L007,-19,Cycle,Base Insertion,27095,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-19,Cycle,Base Deletion,27095,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-2,Cycle,Base Substitution,27047,70.41,27.00,28.67,-1.67,Before
REGRESSION.HCC1395_tumor.L007,-20,Cycle,Base Substitution,27031,35.42,31.00,32.02,-1.02,Before
REGRESSION.HCC1395_tumor.L007,-20,Cycle,Base Insertion,27031,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-20,Cycle,Base Deletion,27031,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-21,Cycle,Base Substitution,26901,37.14,30.00,31.96,-1.96,Before
REGRESSION.HCC1395_tumor.L007,-21,Cycle,Base Insertion,26901,1.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-21,Cycle,Base Deletion,26901,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-22,Cycle,Base Substitution,26924,33.99,30.00,31.94,-1.94,Before
REGRESSION.HCC1395_tumor.L007,-22,Cycle,Base Insertion,26924,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-22,Cycle,Base Deletion,26924,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-23,Cycle,Base Substitution,27047,39.69,30.00,31.62,-1.62,Before
REGRESSION.HCC1395_tumor.L007,-23,Cycle,Base Insertion,27047,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-23,Cycle,Base Deletion,27047,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-24,Cycle,Base Substitution,26879,35.38,30.00,31.70,-1.70,Before
REGRESSION.HCC1395_tumor.L007,-24,Cycle,Base Insertion,26879,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-24,Cycle,Base Deletion,26879,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-25,Cycle,Base Substitution,26944,41.04,30.00,31.37,-1.37,Before
REGRESSION.HCC1395_tumor.L007,-25,Cycle,Base Insertion,26944,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-25,Cycle,Base Deletion,26944,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-26,Cycle,Base Substitution,26868,46.02,28.00,29.91,-1.91,Before
REGRESSION.HCC1395_tumor.L007,-26,Cycle,Base Insertion,26868,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-26,Cycle,Base Deletion,26868,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-27,Cycle,Base Substitution,26892,39.82,29.00,29.97,-0.97,Before
REGRESSION.HCC1395_tumor.L007,-27,Cycle,Base Insertion,26891,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-27,Cycle,Base Deletion,26891,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-28,Cycle,Base Substitution,26832,44.19,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L007,-28,Cycle,Base Insertion,26830,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-28,Cycle,Base Deletion,26830,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-29,Cycle,Base Substitution,27013,35.70,30.00,30.25,-0.25,Before
REGRESSION.HCC1395_tumor.L007,-29,Cycle,Base Insertion,27010,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-29,Cycle,Base Deletion,27010,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-3,Cycle,Base Substitution,27194,67.89,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L007,-30,Cycle,Base Substitution,26835,40.47,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L007,-30,Cycle,Base Insertion,26831,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-30,Cycle,Base Deletion,26831,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-31,Cycle,Base Substitution,26736,44.85,29.00,30.03,-1.03,Before
REGRESSION.HCC1395_tumor.L007,-31,Cycle,Base Insertion,26732,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-31,Cycle,Base Deletion,26732,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-32,Cycle,Base Substitution,26815,31.81,30.00,30.50,-0.50,Before
REGRESSION.HCC1395_tumor.L007,-32,Cycle,Base Insertion,26812,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-32,Cycle,Base Deletion,26812,2.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-33,Cycle,Base Substitution,26857,48.42,29.00,30.71,-1.71,Before
REGRESSION.HCC1395_tumor.L007,-33,Cycle,Base Insertion,26854,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-33,Cycle,Base Deletion,26854,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-34,Cycle,Base Substitution,26807,29.64,30.00,30.37,-0.37,Before
REGRESSION.HCC1395_tumor.L007,-34,Cycle,Base Insertion,26806,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-34,Cycle,Base Deletion,26806,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-35,Cycle,Base Substitution,26889,44.01,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L007,-35,Cycle,Base Insertion,26888,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-35,Cycle,Base Deletion,26888,1.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-36,Cycle,Base Substitution,26928,36.60,30.00,30.15,-0.15,Before
REGRESSION.HCC1395_tumor.L007,-36,Cycle,Base Insertion,26926,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-36,Cycle,Base Deletion,26926,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-37,Cycle,Base Substitution,26860,36.28,30.00,30.45,-0.45,Before
REGRESSION.HCC1395_tumor.L007,-37,Cycle,Base Insertion,26859,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-37,Cycle,Base Deletion,26859,2.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-38,Cycle,Base Substitution,26767,44.65,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L007,-38,Cycle,Base Insertion,26765,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-38,Cycle,Base Deletion,26765,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-39,Cycle,Base Substitution,26821,40.00,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L007,-39,Cycle,Base Insertion,26819,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-39,Cycle,Base Deletion,26819,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-4,Cycle,Base Substitution,27106,81.12,27.00,29.93,-2.93,Before
REGRESSION.HCC1395_tumor.L007,-40,Cycle,Base Substitution,26789,30.93,30.00,30.29,-0.29,Before
REGRESSION.HCC1395_tumor.L007,-40,Cycle,Base Insertion,26787,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-40,Cycle,Base Deletion,26787,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-41,Cycle,Base Substitution,26823,30.76,30.00,30.40,-0.40,Before
REGRESSION.HCC1395_tumor.L007,-41,Cycle,Base Insertion,26820,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-41,Cycle,Base Deletion,26820,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-42,Cycle,Base Substitution,26867,29.90,30.00,30.51,-0.51,Before
REGRESSION.HCC1395_tumor.L007,-42,Cycle,Base Insertion,26863,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-42,Cycle,Base Deletion,26863,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-43,Cycle,Base Substitution,26743,47.84,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L007,-43,Cycle,Base Insertion,26737,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-43,Cycle,Base Deletion,26737,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-44,Cycle,Base Substitution,26826,30.03,30.00,30.59,-0.59,Before
REGRESSION.HCC1395_tumor.L007,-44,Cycle,Base Insertion,26824,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-44,Cycle,Base Deletion,26824,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-45,Cycle,Base Substitution,26781,36.06,30.00,30.37,-0.37,Before
REGRESSION.HCC1395_tumor.L007,-45,Cycle,Base Insertion,26774,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-45,Cycle,Base Deletion,26774,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-46,Cycle,Base Substitution,26761,36.92,30.00,30.13,-0.13,Before
REGRESSION.HCC1395_tumor.L007,-46,Cycle,Base Insertion,26756,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-46,Cycle,Base Deletion,26756,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-47,Cycle,Base Substitution,26786,43.43,29.00,30.57,-1.57,Before
REGRESSION.HCC1395_tumor.L007,-47,Cycle,Base Insertion,26778,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-47,Cycle,Base Deletion,26778,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-48,Cycle,Base Substitution,26748,39.86,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L007,-48,Cycle,Base Insertion,26737,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-48,Cycle,Base Deletion,26737,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-49,Cycle,Base Substitution,26674,33.84,30.00,30.58,-0.58,Before
REGRESSION.HCC1395_tumor.L007,-49,Cycle,Base Insertion,26666,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-49,Cycle,Base Deletion,26666,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-5,Cycle,Base Substitution,27231,47.51,29.00,30.69,-1.69,Before
REGRESSION.HCC1395_tumor.L007,-5,Cycle,Base Insertion,27231,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-5,Cycle,Base Deletion,27231,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-50,Cycle,Base Substitution,26722,37.99,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L007,-50,Cycle,Base Insertion,26704,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-50,Cycle,Base Deletion,26704,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-51,Cycle,Base Substitution,26691,43.56,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L007,-51,Cycle,Base Insertion,26668,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-51,Cycle,Base Deletion,26668,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-52,Cycle,Base Substitution,26533,39.47,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L007,-52,Cycle,Base Insertion,26507,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-52,Cycle,Base Deletion,26507,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-53,Cycle,Base Substitution,26568,39.27,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L007,-53,Cycle,Base Insertion,26540,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-53,Cycle,Base Deletion,26540,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-54,Cycle,Base Substitution,26656,49.79,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L007,-54,Cycle,Base Insertion,26624,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-54,Cycle,Base Deletion,26624,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-55,Cycle,Base Substitution,26714,41.57,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L007,-55,Cycle,Base Insertion,26674,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-55,Cycle,Base Deletion,26674,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-56,Cycle,Base Substitution,26690,45.45,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L007,-56,Cycle,Base Insertion,26657,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-56,Cycle,Base Deletion,26657,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-57,Cycle,Base Substitution,26544,39.26,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L007,-57,Cycle,Base Insertion,26491,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-57,Cycle,Base Deletion,26491,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-58,Cycle,Base Substitution,26556,34.73,30.00,30.79,-0.79,Before
REGRESSION.HCC1395_tumor.L007,-58,Cycle,Base Insertion,26510,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-58,Cycle,Base Deletion,26510,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-59,Cycle,Base Substitution,26616,46.96,29.00,30.59,-1.59,Before
REGRESSION.HCC1395_tumor.L007,-59,Cycle,Base Insertion,26569,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-59,Cycle,Base Deletion,26569,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-6,Cycle,Base Substitution,27075,45.63,29.00,30.80,-1.80,Before
REGRESSION.HCC1395_tumor.L007,-6,Cycle,Base Insertion,27075,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-6,Cycle,Base Deletion,27075,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-60,Cycle,Base Substitution,26549,51.86,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L007,-60,Cycle,Base Insertion,26488,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-60,Cycle,Base Deletion,26488,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-61,Cycle,Base Substitution,26431,38.10,30.00,31.09,-1.09,Before
REGRESSION.HCC1395_tumor.L007,-61,Cycle,Base Insertion,26383,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-61,Cycle,Base Deletion,26383,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-62,Cycle,Base Substitution,26473,42.87,29.00,30.85,-1.85,Before
REGRESSION.HCC1395_tumor.L007,-62,Cycle,Base Insertion,26420,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-62,Cycle,Base Deletion,26420,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-63,Cycle,Base Substitution,26383,33.61,30.00,30.70,-0.70,Before
REGRESSION.HCC1395_tumor.L007,-63,Cycle,Base Insertion,26330,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-63,Cycle,Base Deletion,26330,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-64,Cycle,Base Substitution,26394,40.23,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L007,-64,Cycle,Base Insertion,26337,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-64,Cycle,Base Deletion,26337,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-65,Cycle,Base Substitution,26348,37.07,30.00,30.75,-0.75,Before
REGRESSION.HCC1395_tumor.L007,-65,Cycle,Base Insertion,26270,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-65,Cycle,Base Deletion,26270,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-66,Cycle,Base Substitution,26426,39.00,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L007,-66,Cycle,Base Insertion,26345,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-66,Cycle,Base Deletion,26345,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-67,Cycle,Base Substitution,26477,47.07,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L007,-67,Cycle,Base Insertion,26391,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-67,Cycle,Base Deletion,26391,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-68,Cycle,Base Substitution,26461,36.55,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L007,-68,Cycle,Base Insertion,26371,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-68,Cycle,Base Deletion,26371,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-69,Cycle,Base Substitution,26398,40.58,29.00,30.90,-1.90,Before
REGRESSION.HCC1395_tumor.L007,-69,Cycle,Base Insertion,26309,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-69,Cycle,Base Deletion,26309,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-7,Cycle,Base Substitution,27003,51.13,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L007,-7,Cycle,Base Insertion,27003,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-7,Cycle,Base Deletion,27003,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-70,Cycle,Base Substitution,26263,34.24,30.00,30.44,-0.44,Before
REGRESSION.HCC1395_tumor.L007,-70,Cycle,Base Insertion,26167,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-70,Cycle,Base Deletion,26167,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-71,Cycle,Base Substitution,26211,39.29,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L007,-71,Cycle,Base Insertion,26124,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-71,Cycle,Base Deletion,26124,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-72,Cycle,Base Substitution,26154,47.02,29.00,30.71,-1.71,Before
REGRESSION.HCC1395_tumor.L007,-72,Cycle,Base Insertion,26048,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-72,Cycle,Base Deletion,26048,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-73,Cycle,Base Substitution,26242,44.18,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L007,-73,Cycle,Base Insertion,26124,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-73,Cycle,Base Deletion,26124,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-74,Cycle,Base Substitution,26099,40.08,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L007,-74,Cycle,Base Insertion,25975,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-74,Cycle,Base Deletion,25975,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-75,Cycle,Base Substitution,26158,44.48,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L007,-75,Cycle,Base Insertion,26035,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-75,Cycle,Base Deletion,26035,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-76,Cycle,Base Substitution,26088,40.17,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L007,-76,Cycle,Base Insertion,25966,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-76,Cycle,Base Deletion,25966,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-77,Cycle,Base Substitution,26072,37.20,29.00,30.71,-1.71,Before
REGRESSION.HCC1395_tumor.L007,-77,Cycle,Base Insertion,25950,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-77,Cycle,Base Deletion,25950,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-78,Cycle,Base Substitution,25968,41.74,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L007,-78,Cycle,Base Insertion,25831,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-78,Cycle,Base Deletion,25831,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-79,Cycle,Base Substitution,25966,53.52,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L007,-79,Cycle,Base Insertion,25827,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-79,Cycle,Base Deletion,25827,2.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-8,Cycle,Base Substitution,27113,37.48,30.00,30.67,-0.67,Before
REGRESSION.HCC1395_tumor.L007,-8,Cycle,Base Insertion,27113,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-8,Cycle,Base Deletion,27113,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-80,Cycle,Base Substitution,25952,38.02,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L007,-80,Cycle,Base Insertion,25798,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-80,Cycle,Base Deletion,25798,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-81,Cycle,Base Substitution,25916,41.35,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L007,-81,Cycle,Base Insertion,25764,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-81,Cycle,Base Deletion,25764,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-82,Cycle,Base Substitution,25881,38.78,29.00,30.33,-1.33,Before
REGRESSION.HCC1395_tumor.L007,-82,Cycle,Base Insertion,25696,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-82,Cycle,Base Deletion,25696,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-83,Cycle,Base Substitution,25853,41.18,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L007,-83,Cycle,Base Insertion,25674,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-83,Cycle,Base Deletion,25674,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-84,Cycle,Base Substitution,25749,48.57,29.00,30.58,-1.58,Before
REGRESSION.HCC1395_tumor.L007,-84,Cycle,Base Insertion,25571,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-84,Cycle,Base Deletion,25571,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-85,Cycle,Base Substitution,25835,43.04,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L007,-85,Cycle,Base Insertion,25655,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-85,Cycle,Base Deletion,25655,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-86,Cycle,Base Substitution,25813,36.36,30.00,30.79,-0.79,Before
REGRESSION.HCC1395_tumor.L007,-86,Cycle,Base Insertion,25639,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-86,Cycle,Base Deletion,25639,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-87,Cycle,Base Substitution,25581,45.47,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L007,-87,Cycle,Base Insertion,25409,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-87,Cycle,Base Deletion,25409,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-88,Cycle,Base Substitution,25674,45.90,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L007,-88,Cycle,Base Insertion,25475,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-88,Cycle,Base Deletion,25475,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-89,Cycle,Base Substitution,25717,59.89,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L007,-89,Cycle,Base Insertion,25510,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-89,Cycle,Base Deletion,25510,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-9,Cycle,Base Substitution,26973,44.89,30.00,31.42,-1.42,Before
REGRESSION.HCC1395_tumor.L007,-9,Cycle,Base Insertion,26973,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-9,Cycle,Base Deletion,26973,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-90,Cycle,Base Substitution,25623,38.12,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L007,-90,Cycle,Base Insertion,25405,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-90,Cycle,Base Deletion,25405,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-91,Cycle,Base Substitution,25487,47.22,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L007,-91,Cycle,Base Insertion,25244,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-91,Cycle,Base Deletion,25244,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-92,Cycle,Base Substitution,25452,45.65,29.00,30.11,-1.11,Before
REGRESSION.HCC1395_tumor.L007,-92,Cycle,Base Insertion,25220,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-92,Cycle,Base Deletion,25220,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-93,Cycle,Base Substitution,25391,38.23,29.00,30.47,-1.47,Before
REGRESSION.HCC1395_tumor.L007,-93,Cycle,Base Insertion,25157,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-93,Cycle,Base Deletion,25157,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-94,Cycle,Base Substitution,25340,47.47,29.00,30.47,-1.47,Before
REGRESSION.HCC1395_tumor.L007,-94,Cycle,Base Insertion,25123,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-94,Cycle,Base Deletion,25123,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-95,Cycle,Base Substitution,25288,51.97,29.00,30.07,-1.07,Before
REGRESSION.HCC1395_tumor.L007,-95,Cycle,Base Insertion,25077,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-95,Cycle,Base Deletion,25077,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-96,Cycle,Base Substitution,25354,55.56,29.00,30.27,-1.27,Before
REGRESSION.HCC1395_tumor.L007,-96,Cycle,Base Insertion,25138,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-96,Cycle,Base Deletion,25138,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-97,Cycle,Base Substitution,25155,45.35,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L007,-97,Cycle,Base Insertion,24948,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-97,Cycle,Base Deletion,24948,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-98,Cycle,Base Substitution,25063,40.70,29.00,30.53,-1.53,Before
REGRESSION.HCC1395_tumor.L007,-98,Cycle,Base Insertion,24841,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-98,Cycle,Base Deletion,24841,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-99,Cycle,Base Substitution,25030,46.34,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L007,-99,Cycle,Base Insertion,24790,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,-99,Cycle,Base Deletion,24790,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,1,Cycle,Base Substitution,26614,59.28,27.00,28.88,-1.88,Before
REGRESSION.HCC1395_tumor.L007,10,Cycle,Base Substitution,26979,31.23,31.00,31.26,-0.26,Before
REGRESSION.HCC1395_tumor.L007,10,Cycle,Base Insertion,26979,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,10,Cycle,Base Deletion,26979,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,100,Cycle,Base Substitution,24851,22.76,30.00,30.55,-0.55,Before
REGRESSION.HCC1395_tumor.L007,100,Cycle,Base Insertion,24605,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,100,Cycle,Base Deletion,24605,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,101,Cycle,Base Substitution,24824,39.26,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L007,101,Cycle,Base Insertion,24577,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,101,Cycle,Base Deletion,24577,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,102,Cycle,Base Substitution,24795,41.61,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L007,102,Cycle,Base Insertion,24541,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,102,Cycle,Base Deletion,24541,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,103,Cycle,Base Substitution,24709,44.63,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L007,103,Cycle,Base Insertion,24462,1.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,103,Cycle,Base Deletion,24462,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,104,Cycle,Base Substitution,24742,42.07,29.00,30.47,-1.47,Before
REGRESSION.HCC1395_tumor.L007,104,Cycle,Base Insertion,24480,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,104,Cycle,Base Deletion,24480,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,105,Cycle,Base Substitution,24604,34.11,30.00,30.57,-0.57,Before
REGRESSION.HCC1395_tumor.L007,105,Cycle,Base Insertion,24337,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,105,Cycle,Base Deletion,24337,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,106,Cycle,Base Substitution,24542,47.53,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L007,106,Cycle,Base Insertion,24269,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,106,Cycle,Base Deletion,24269,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,107,Cycle,Base Substitution,24427,49.10,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L007,107,Cycle,Base Insertion,24138,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,107,Cycle,Base Deletion,24138,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,108,Cycle,Base Substitution,24410,44.57,29.00,30.50,-1.50,Before
REGRESSION.HCC1395_tumor.L007,108,Cycle,Base Insertion,24130,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,108,Cycle,Base Deletion,24130,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,109,Cycle,Base Substitution,24316,44.41,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L007,109,Cycle,Base Insertion,24034,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,109,Cycle,Base Deletion,24034,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,11,Cycle,Base Substitution,27023,30.64,31.00,31.41,-0.41,Before
REGRESSION.HCC1395_tumor.L007,11,Cycle,Base Insertion,27023,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,11,Cycle,Base Deletion,27023,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,110,Cycle,Base Substitution,24138,37.77,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L007,110,Cycle,Base Insertion,23877,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,110,Cycle,Base Deletion,23877,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,111,Cycle,Base Substitution,24241,35.72,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L007,111,Cycle,Base Insertion,23973,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,111,Cycle,Base Deletion,23973,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,112,Cycle,Base Substitution,24134,45.79,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L007,112,Cycle,Base Insertion,23857,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,112,Cycle,Base Deletion,23857,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,113,Cycle,Base Substitution,24143,39.42,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L007,113,Cycle,Base Insertion,23862,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,113,Cycle,Base Deletion,23862,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,114,Cycle,Base Substitution,23986,45.22,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L007,114,Cycle,Base Insertion,23713,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,114,Cycle,Base Deletion,23713,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,115,Cycle,Base Substitution,23998,36.59,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L007,115,Cycle,Base Insertion,23694,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,115,Cycle,Base Deletion,23694,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,116,Cycle,Base Substitution,23935,39.82,29.00,30.62,-1.62,Before
REGRESSION.HCC1395_tumor.L007,116,Cycle,Base Insertion,23629,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,116,Cycle,Base Deletion,23629,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,117,Cycle,Base Substitution,23806,33.66,30.00,30.41,-0.41,Before
REGRESSION.HCC1395_tumor.L007,117,Cycle,Base Insertion,23504,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,117,Cycle,Base Deletion,23504,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,118,Cycle,Base Substitution,23777,49.36,28.00,29.83,-1.83,Before
REGRESSION.HCC1395_tumor.L007,118,Cycle,Base Insertion,23480,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,118,Cycle,Base Deletion,23480,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,119,Cycle,Base Substitution,23834,47.73,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L007,119,Cycle,Base Insertion,23547,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,119,Cycle,Base Deletion,23547,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,12,Cycle,Base Substitution,26895,32.65,30.00,31.27,-1.27,Before
REGRESSION.HCC1395_tumor.L007,12,Cycle,Base Insertion,26895,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,12,Cycle,Base Deletion,26895,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,120,Cycle,Base Substitution,23676,41.25,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L007,120,Cycle,Base Insertion,23386,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,120,Cycle,Base Deletion,23386,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,121,Cycle,Base Substitution,23528,33.98,30.00,30.05,-0.05,Before
REGRESSION.HCC1395_tumor.L007,121,Cycle,Base Insertion,23222,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,121,Cycle,Base Deletion,23222,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,122,Cycle,Base Substitution,23595,54.14,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L007,122,Cycle,Base Insertion,23300,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,122,Cycle,Base Deletion,23300,1.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,123,Cycle,Base Substitution,23440,36.89,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L007,123,Cycle,Base Insertion,23137,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,123,Cycle,Base Deletion,23137,1.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,124,Cycle,Base Substitution,23319,37.65,29.00,29.79,-0.79,Before
REGRESSION.HCC1395_tumor.L007,124,Cycle,Base Insertion,23022,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,124,Cycle,Base Deletion,23022,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,125,Cycle,Base Substitution,23334,51.28,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L007,125,Cycle,Base Insertion,23022,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,125,Cycle,Base Deletion,23022,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,126,Cycle,Base Substitution,23256,37.12,29.00,30.26,-1.26,Before
REGRESSION.HCC1395_tumor.L007,126,Cycle,Base Insertion,22966,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,126,Cycle,Base Deletion,22966,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,127,Cycle,Base Substitution,23132,53.61,28.00,29.74,-1.74,Before
REGRESSION.HCC1395_tumor.L007,127,Cycle,Base Insertion,22827,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,127,Cycle,Base Deletion,22827,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,128,Cycle,Base Substitution,22906,49.15,28.00,29.98,-1.98,Before
REGRESSION.HCC1395_tumor.L007,128,Cycle,Base Insertion,22615,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,128,Cycle,Base Deletion,22615,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,129,Cycle,Base Substitution,22922,50.93,28.00,29.98,-1.98,Before
REGRESSION.HCC1395_tumor.L007,129,Cycle,Base Insertion,22621,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,129,Cycle,Base Deletion,22621,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,13,Cycle,Base Substitution,26888,33.72,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L007,13,Cycle,Base Insertion,26888,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,13,Cycle,Base Deletion,26888,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,130,Cycle,Base Substitution,22954,50.20,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L007,130,Cycle,Base Insertion,22628,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,130,Cycle,Base Deletion,22628,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,131,Cycle,Base Substitution,22918,53.50,28.00,29.97,-1.97,Before
REGRESSION.HCC1395_tumor.L007,131,Cycle,Base Insertion,22569,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,131,Cycle,Base Deletion,22569,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,132,Cycle,Base Substitution,22888,39.93,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L007,132,Cycle,Base Insertion,22555,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,132,Cycle,Base Deletion,22555,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,133,Cycle,Base Substitution,22675,47.13,28.00,29.94,-1.94,Before
REGRESSION.HCC1395_tumor.L007,133,Cycle,Base Insertion,22347,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,133,Cycle,Base Deletion,22347,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,134,Cycle,Base Substitution,22651,37.86,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L007,134,Cycle,Base Insertion,22344,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,134,Cycle,Base Deletion,22344,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,135,Cycle,Base Substitution,22533,49.96,28.00,29.96,-1.96,Before
REGRESSION.HCC1395_tumor.L007,135,Cycle,Base Insertion,22239,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,135,Cycle,Base Deletion,22239,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,136,Cycle,Base Substitution,22426,50.56,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L007,136,Cycle,Base Insertion,22113,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,136,Cycle,Base Deletion,22113,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,137,Cycle,Base Substitution,22498,52.77,28.00,29.94,-1.94,Before
REGRESSION.HCC1395_tumor.L007,137,Cycle,Base Insertion,22171,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,137,Cycle,Base Deletion,22171,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,138,Cycle,Base Substitution,22386,35.75,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L007,138,Cycle,Base Insertion,22081,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,138,Cycle,Base Deletion,22081,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,139,Cycle,Base Substitution,22375,52.16,28.00,29.97,-1.97,Before
REGRESSION.HCC1395_tumor.L007,139,Cycle,Base Insertion,22028,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,139,Cycle,Base Deletion,22028,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,14,Cycle,Base Substitution,26877,29.22,31.00,31.41,-0.41,Before
REGRESSION.HCC1395_tumor.L007,14,Cycle,Base Insertion,26877,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,14,Cycle,Base Deletion,26877,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,140,Cycle,Base Substitution,22290,41.14,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L007,140,Cycle,Base Insertion,21971,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,140,Cycle,Base Deletion,21971,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,141,Cycle,Base Substitution,22198,42.54,28.00,29.99,-1.99,Before
REGRESSION.HCC1395_tumor.L007,141,Cycle,Base Insertion,21879,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,141,Cycle,Base Deletion,21879,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,142,Cycle,Base Substitution,22010,41.73,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L007,142,Cycle,Base Insertion,21648,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,142,Cycle,Base Deletion,21648,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,143,Cycle,Base Substitution,22095,41.66,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L007,143,Cycle,Base Insertion,21775,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,143,Cycle,Base Deletion,21775,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,144,Cycle,Base Substitution,22000,47.36,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L007,144,Cycle,Base Insertion,21641,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,144,Cycle,Base Deletion,21641,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,145,Cycle,Base Substitution,21803,38.87,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L007,145,Cycle,Base Insertion,21427,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,145,Cycle,Base Deletion,21427,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,146,Cycle,Base Substitution,21823,48.25,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L007,146,Cycle,Base Insertion,21475,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,146,Cycle,Base Deletion,21475,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,147,Cycle,Base Substitution,21700,45.09,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L007,148,Cycle,Base Substitution,21613,46.97,29.00,30.17,-1.17,Before
REGRESSION.HCC1395_tumor.L007,149,Cycle,Base Substitution,21420,50.31,28.00,29.61,-1.61,Before
REGRESSION.HCC1395_tumor.L007,15,Cycle,Base Substitution,26790,28.05,31.00,31.40,-0.40,Before
REGRESSION.HCC1395_tumor.L007,15,Cycle,Base Insertion,26790,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,15,Cycle,Base Deletion,26790,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,150,Cycle,Base Substitution,21360,42.48,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L007,16,Cycle,Base Substitution,26788,20.33,32.00,32.85,-0.85,Before
REGRESSION.HCC1395_tumor.L007,16,Cycle,Base Insertion,26788,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,16,Cycle,Base Deletion,26788,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,17,Cycle,Base Substitution,26792,31.16,31.00,32.49,-1.49,Before
REGRESSION.HCC1395_tumor.L007,17,Cycle,Base Insertion,26792,0.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,17,Cycle,Base Deletion,26792,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,18,Cycle,Base Substitution,26771,23.05,32.00,32.98,-0.98,Before
REGRESSION.HCC1395_tumor.L007,18,Cycle,Base Insertion,26771,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,18,Cycle,Base Deletion,26771,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,19,Cycle,Base Substitution,26965,20.39,33.00,33.08,-0.08,Before
REGRESSION.HCC1395_tumor.L007,19,Cycle,Base Insertion,26965,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,19,Cycle,Base Deletion,26965,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,2,Cycle,Base Substitution,27040,49.01,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L007,20,Cycle,Base Substitution,26907,20.11,32.00,32.66,-0.66,Before
REGRESSION.HCC1395_tumor.L007,20,Cycle,Base Insertion,26907,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,20,Cycle,Base Deletion,26907,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,21,Cycle,Base Substitution,26842,29.34,31.00,32.62,-1.62,Before
REGRESSION.HCC1395_tumor.L007,21,Cycle,Base Insertion,26842,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,21,Cycle,Base Deletion,26842,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,22,Cycle,Base Substitution,26782,21.11,32.00,32.98,-0.98,Before
REGRESSION.HCC1395_tumor.L007,22,Cycle,Base Insertion,26782,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,22,Cycle,Base Deletion,26782,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,23,Cycle,Base Substitution,26820,20.12,33.00,33.08,-0.08,Before
REGRESSION.HCC1395_tumor.L007,23,Cycle,Base Insertion,26820,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,23,Cycle,Base Deletion,26820,2.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,24,Cycle,Base Substitution,26692,19.08,33.00,33.04,-0.04,Before
REGRESSION.HCC1395_tumor.L007,24,Cycle,Base Insertion,26692,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,24,Cycle,Base Deletion,26692,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,25,Cycle,Base Substitution,26650,23.12,32.00,33.08,-1.08,Before
REGRESSION.HCC1395_tumor.L007,25,Cycle,Base Insertion,26650,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,25,Cycle,Base Deletion,26650,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,26,Cycle,Base Substitution,26742,27.69,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L007,26,Cycle,Base Insertion,26742,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,26,Cycle,Base Deletion,26742,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,27,Cycle,Base Substitution,26706,33.75,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L007,27,Cycle,Base Insertion,26706,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,27,Cycle,Base Deletion,26706,2.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,28,Cycle,Base Substitution,26733,30.32,31.00,31.54,-0.54,Before
REGRESSION.HCC1395_tumor.L007,28,Cycle,Base Insertion,26733,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,28,Cycle,Base Deletion,26733,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,29,Cycle,Base Substitution,26777,26.25,31.00,31.37,-0.37,Before
REGRESSION.HCC1395_tumor.L007,29,Cycle,Base Insertion,26777,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,29,Cycle,Base Deletion,26777,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,3,Cycle,Base Substitution,26924,57.56,29.00,30.85,-1.85,Before
REGRESSION.HCC1395_tumor.L007,30,Cycle,Base Substitution,26692,28.14,31.00,31.53,-0.53,Before
REGRESSION.HCC1395_tumor.L007,30,Cycle,Base Insertion,26692,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,30,Cycle,Base Deletion,26692,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,31,Cycle,Base Substitution,26742,30.71,31.00,31.46,-0.46,Before
REGRESSION.HCC1395_tumor.L007,31,Cycle,Base Insertion,26741,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,31,Cycle,Base Deletion,26741,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,32,Cycle,Base Substitution,26712,41.08,30.00,31.81,-1.81,Before
REGRESSION.HCC1395_tumor.L007,32,Cycle,Base Insertion,26712,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,32,Cycle,Base Deletion,26712,1.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,33,Cycle,Base Substitution,26785,38.53,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L007,33,Cycle,Base Insertion,26784,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,33,Cycle,Base Deletion,26784,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,34,Cycle,Base Substitution,26766,29.06,31.00,31.67,-0.67,Before
REGRESSION.HCC1395_tumor.L007,34,Cycle,Base Insertion,26766,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,34,Cycle,Base Deletion,26766,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,35,Cycle,Base Substitution,26596,41.10,30.00,31.80,-1.80,Before
REGRESSION.HCC1395_tumor.L007,35,Cycle,Base Insertion,26596,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,35,Cycle,Base Deletion,26596,1.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,36,Cycle,Base Substitution,26684,35.20,30.00,31.58,-1.58,Before
REGRESSION.HCC1395_tumor.L007,36,Cycle,Base Insertion,26683,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,36,Cycle,Base Deletion,26683,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,37,Cycle,Base Substitution,26775,32.16,30.00,31.72,-1.72,Before
REGRESSION.HCC1395_tumor.L007,37,Cycle,Base Insertion,26774,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,37,Cycle,Base Deletion,26774,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,38,Cycle,Base Substitution,26682,29.54,31.00,31.89,-0.89,Before
REGRESSION.HCC1395_tumor.L007,38,Cycle,Base Insertion,26681,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,38,Cycle,Base Deletion,26681,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,39,Cycle,Base Substitution,26516,34.65,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L007,39,Cycle,Base Insertion,26515,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,39,Cycle,Base Deletion,26515,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,4,Cycle,Base Substitution,26966,65.88,28.00,30.92,-2.92,Before
REGRESSION.HCC1395_tumor.L007,40,Cycle,Base Substitution,26601,33.27,30.00,31.42,-1.42,Before
REGRESSION.HCC1395_tumor.L007,40,Cycle,Base Insertion,26599,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,40,Cycle,Base Deletion,26599,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,41,Cycle,Base Substitution,26642,33.88,30.00,31.47,-1.47,Before
REGRESSION.HCC1395_tumor.L007,41,Cycle,Base Insertion,26640,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,41,Cycle,Base Deletion,26640,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,42,Cycle,Base Substitution,26585,38.74,30.00,31.57,-1.57,Before
REGRESSION.HCC1395_tumor.L007,42,Cycle,Base Insertion,26581,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,42,Cycle,Base Deletion,26581,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,43,Cycle,Base Substitution,26605,34.43,30.00,31.56,-1.56,Before
REGRESSION.HCC1395_tumor.L007,43,Cycle,Base Insertion,26601,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,43,Cycle,Base Deletion,26601,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,44,Cycle,Base Substitution,26465,31.02,31.00,31.37,-0.37,Before
REGRESSION.HCC1395_tumor.L007,44,Cycle,Base Insertion,26461,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,44,Cycle,Base Deletion,26461,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,45,Cycle,Base Substitution,26485,37.99,30.00,31.70,-1.70,Before
REGRESSION.HCC1395_tumor.L007,45,Cycle,Base Insertion,26480,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,45,Cycle,Base Deletion,26480,1.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,46,Cycle,Base Substitution,26614,31.79,30.00,31.65,-1.65,Before
REGRESSION.HCC1395_tumor.L007,46,Cycle,Base Insertion,26609,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,46,Cycle,Base Deletion,26609,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,47,Cycle,Base Substitution,26518,40.13,30.00,31.24,-1.24,Before
REGRESSION.HCC1395_tumor.L007,47,Cycle,Base Insertion,26512,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,47,Cycle,Base Deletion,26512,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,48,Cycle,Base Substitution,26512,34.56,30.00,31.33,-1.33,Before
REGRESSION.HCC1395_tumor.L007,48,Cycle,Base Insertion,26503,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,48,Cycle,Base Deletion,26503,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,49,Cycle,Base Substitution,26529,35.09,30.00,31.63,-1.63,Before
REGRESSION.HCC1395_tumor.L007,49,Cycle,Base Insertion,26522,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,49,Cycle,Base Deletion,26522,2.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,5,Cycle,Base Substitution,26947,37.74,30.00,31.48,-1.48,Before
REGRESSION.HCC1395_tumor.L007,5,Cycle,Base Insertion,26947,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,5,Cycle,Base Deletion,26947,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,50,Cycle,Base Substitution,26549,34.88,30.00,31.55,-1.55,Before
REGRESSION.HCC1395_tumor.L007,50,Cycle,Base Insertion,26537,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,50,Cycle,Base Deletion,26537,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,51,Cycle,Base Substitution,26512,40.13,30.00,31.85,-1.85,Before
REGRESSION.HCC1395_tumor.L007,51,Cycle,Base Insertion,26495,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,51,Cycle,Base Deletion,26495,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,52,Cycle,Base Substitution,26504,30.93,31.00,31.41,-0.41,Before
REGRESSION.HCC1395_tumor.L007,52,Cycle,Base Insertion,26479,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,52,Cycle,Base Deletion,26479,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,53,Cycle,Base Substitution,26442,29.13,31.00,31.52,-0.52,Before
REGRESSION.HCC1395_tumor.L007,53,Cycle,Base Insertion,26413,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,53,Cycle,Base Deletion,26413,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,54,Cycle,Base Substitution,26384,36.12,30.00,31.57,-1.57,Before
REGRESSION.HCC1395_tumor.L007,54,Cycle,Base Insertion,26352,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,54,Cycle,Base Deletion,26352,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,55,Cycle,Base Substitution,26510,31.16,31.00,31.42,-0.42,Before
REGRESSION.HCC1395_tumor.L007,55,Cycle,Base Insertion,26475,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,55,Cycle,Base Deletion,26475,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,56,Cycle,Base Substitution,26471,40.47,30.00,31.32,-1.32,Before
REGRESSION.HCC1395_tumor.L007,56,Cycle,Base Insertion,26443,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,56,Cycle,Base Deletion,26443,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,57,Cycle,Base Substitution,26492,42.98,30.00,31.44,-1.44,Before
REGRESSION.HCC1395_tumor.L007,57,Cycle,Base Insertion,26444,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,57,Cycle,Base Deletion,26444,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,58,Cycle,Base Substitution,26421,33.18,30.00,31.84,-1.84,Before
REGRESSION.HCC1395_tumor.L007,58,Cycle,Base Insertion,26375,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,58,Cycle,Base Deletion,26375,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,59,Cycle,Base Substitution,26425,31.87,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L007,59,Cycle,Base Insertion,26382,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,59,Cycle,Base Deletion,26382,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,6,Cycle,Base Substitution,26946,34.67,30.00,31.34,-1.34,Before
REGRESSION.HCC1395_tumor.L007,6,Cycle,Base Insertion,26946,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,6,Cycle,Base Deletion,26946,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,60,Cycle,Base Substitution,26399,38.62,30.00,31.66,-1.66,Before
REGRESSION.HCC1395_tumor.L007,60,Cycle,Base Insertion,26344,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,60,Cycle,Base Deletion,26344,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,61,Cycle,Base Substitution,26426,30.22,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L007,61,Cycle,Base Insertion,26378,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,61,Cycle,Base Deletion,26378,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,62,Cycle,Base Substitution,26386,28.27,31.00,31.56,-0.56,Before
REGRESSION.HCC1395_tumor.L007,62,Cycle,Base Insertion,26328,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,62,Cycle,Base Deletion,26328,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,63,Cycle,Base Substitution,26330,40.86,30.00,31.28,-1.28,Before
REGRESSION.HCC1395_tumor.L007,63,Cycle,Base Insertion,26270,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,63,Cycle,Base Deletion,26270,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,64,Cycle,Base Substitution,26419,29.18,31.00,31.22,-0.22,Before
REGRESSION.HCC1395_tumor.L007,64,Cycle,Base Insertion,26358,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,64,Cycle,Base Deletion,26358,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,65,Cycle,Base Substitution,26435,35.58,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L007,65,Cycle,Base Insertion,26360,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,65,Cycle,Base Deletion,26360,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,66,Cycle,Base Substitution,26217,40.44,30.00,31.19,-1.19,Before
REGRESSION.HCC1395_tumor.L007,66,Cycle,Base Insertion,26140,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,66,Cycle,Base Deletion,26140,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,67,Cycle,Base Substitution,26269,39.64,29.00,30.90,-1.90,Before
REGRESSION.HCC1395_tumor.L007,67,Cycle,Base Insertion,26182,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,67,Cycle,Base Deletion,26182,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,68,Cycle,Base Substitution,26289,40.93,30.00,31.09,-1.09,Before
REGRESSION.HCC1395_tumor.L007,68,Cycle,Base Insertion,26187,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,68,Cycle,Base Deletion,26187,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,69,Cycle,Base Substitution,26148,36.99,30.00,31.19,-1.19,Before
REGRESSION.HCC1395_tumor.L007,69,Cycle,Base Insertion,26056,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,69,Cycle,Base Deletion,26056,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,7,Cycle,Base Substitution,26773,40.66,30.00,31.04,-1.04,Before
REGRESSION.HCC1395_tumor.L007,7,Cycle,Base Insertion,26773,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,7,Cycle,Base Deletion,26773,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,70,Cycle,Base Substitution,26241,30.18,31.00,31.39,-0.39,Before
REGRESSION.HCC1395_tumor.L007,70,Cycle,Base Insertion,26145,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,70,Cycle,Base Deletion,26145,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,71,Cycle,Base Substitution,26117,42.57,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L007,71,Cycle,Base Insertion,26015,0.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,71,Cycle,Base Deletion,26015,1.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,72,Cycle,Base Substitution,26093,35.64,30.00,31.38,-1.38,Before
REGRESSION.HCC1395_tumor.L007,72,Cycle,Base Insertion,25979,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,72,Cycle,Base Deletion,25979,2.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,73,Cycle,Base Substitution,26081,42.02,29.00,30.95,-1.95,Before
REGRESSION.HCC1395_tumor.L007,73,Cycle,Base Insertion,25967,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,73,Cycle,Base Deletion,25967,2.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,74,Cycle,Base Substitution,26043,37.14,30.00,31.25,-1.25,Before
REGRESSION.HCC1395_tumor.L007,74,Cycle,Base Insertion,25920,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,74,Cycle,Base Deletion,25920,2.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,75,Cycle,Base Substitution,26107,33.54,30.00,31.03,-1.03,Before
REGRESSION.HCC1395_tumor.L007,75,Cycle,Base Insertion,25965,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,75,Cycle,Base Deletion,25965,1.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,76,Cycle,Base Substitution,25949,37.21,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L007,76,Cycle,Base Insertion,25828,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,76,Cycle,Base Deletion,25828,2.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,77,Cycle,Base Substitution,25970,39.06,30.00,31.23,-1.23,Before
REGRESSION.HCC1395_tumor.L007,77,Cycle,Base Insertion,25841,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,77,Cycle,Base Deletion,25841,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,78,Cycle,Base Substitution,25877,19.86,31.00,30.84,0.16,Before
REGRESSION.HCC1395_tumor.L007,78,Cycle,Base Insertion,25746,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,78,Cycle,Base Deletion,25746,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,79,Cycle,Base Substitution,25715,30.59,30.00,30.98,-0.98,Before
REGRESSION.HCC1395_tumor.L007,79,Cycle,Base Insertion,25577,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,79,Cycle,Base Deletion,25577,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,8,Cycle,Base Substitution,26965,41.50,30.00,31.05,-1.05,Before
REGRESSION.HCC1395_tumor.L007,8,Cycle,Base Insertion,26965,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,8,Cycle,Base Deletion,26965,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,80,Cycle,Base Substitution,25780,48.50,29.00,30.71,-1.71,Before
REGRESSION.HCC1395_tumor.L007,80,Cycle,Base Insertion,25623,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,80,Cycle,Base Deletion,25623,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,81,Cycle,Base Substitution,25732,38.48,29.00,30.90,-1.90,Before
REGRESSION.HCC1395_tumor.L007,81,Cycle,Base Insertion,25581,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,81,Cycle,Base Deletion,25581,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,82,Cycle,Base Substitution,25707,36.30,30.00,30.95,-0.95,Before
REGRESSION.HCC1395_tumor.L007,82,Cycle,Base Insertion,25533,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,82,Cycle,Base Deletion,25533,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,83,Cycle,Base Substitution,25589,34.74,30.00,30.67,-0.67,Before
REGRESSION.HCC1395_tumor.L007,83,Cycle,Base Insertion,25415,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,83,Cycle,Base Deletion,25415,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,84,Cycle,Base Substitution,25599,40.35,29.00,30.97,-1.97,Before
REGRESSION.HCC1395_tumor.L007,84,Cycle,Base Insertion,25427,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,84,Cycle,Base Deletion,25427,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,85,Cycle,Base Substitution,25655,37.55,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L007,85,Cycle,Base Insertion,25472,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,85,Cycle,Base Deletion,25472,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,86,Cycle,Base Substitution,25626,40.67,29.00,30.66,-1.66,Before
REGRESSION.HCC1395_tumor.L007,86,Cycle,Base Insertion,25448,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,86,Cycle,Base Deletion,25448,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,87,Cycle,Base Substitution,25563,44.40,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L007,87,Cycle,Base Insertion,25385,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,87,Cycle,Base Deletion,25385,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,88,Cycle,Base Substitution,25605,32.08,30.00,30.85,-0.85,Before
REGRESSION.HCC1395_tumor.L007,88,Cycle,Base Insertion,25416,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,88,Cycle,Base Deletion,25416,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,89,Cycle,Base Substitution,25396,49.55,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L007,89,Cycle,Base Insertion,25192,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,89,Cycle,Base Deletion,25192,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,9,Cycle,Base Substitution,26917,34.83,30.00,31.03,-1.03,Before
REGRESSION.HCC1395_tumor.L007,9,Cycle,Base Insertion,26917,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,9,Cycle,Base Deletion,26917,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,90,Cycle,Base Substitution,25375,40.47,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L007,90,Cycle,Base Insertion,25148,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,90,Cycle,Base Deletion,25148,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,91,Cycle,Base Substitution,25240,32.39,30.00,30.84,-0.84,Before
REGRESSION.HCC1395_tumor.L007,91,Cycle,Base Insertion,24996,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,91,Cycle,Base Deletion,24996,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,92,Cycle,Base Substitution,25366,36.80,29.00,30.42,-1.42,Before
REGRESSION.HCC1395_tumor.L007,92,Cycle,Base Insertion,25126,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,92,Cycle,Base Deletion,25126,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,93,Cycle,Base Substitution,25288,40.10,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L007,93,Cycle,Base Insertion,25063,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,93,Cycle,Base Deletion,25063,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,94,Cycle,Base Substitution,25187,36.22,30.00,30.76,-0.76,Before
REGRESSION.HCC1395_tumor.L007,94,Cycle,Base Insertion,24966,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,94,Cycle,Base Deletion,24966,0.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,95,Cycle,Base Substitution,25111,39.30,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L007,95,Cycle,Base Insertion,24892,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,95,Cycle,Base Deletion,24892,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,96,Cycle,Base Substitution,25103,39.12,29.00,30.84,-1.84,Before
REGRESSION.HCC1395_tumor.L007,96,Cycle,Base Insertion,24879,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,96,Cycle,Base Deletion,24879,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,97,Cycle,Base Substitution,25010,49.92,29.00,30.68,-1.68,Before
REGRESSION.HCC1395_tumor.L007,97,Cycle,Base Insertion,24786,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,97,Cycle,Base Deletion,24786,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,98,Cycle,Base Substitution,25019,55.78,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L007,98,Cycle,Base Insertion,24795,0.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,98,Cycle,Base Deletion,24795,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,99,Cycle,Base Substitution,24892,32.12,30.00,30.80,-0.80,Before
REGRESSION.HCC1395_tumor.L007,99,Cycle,Base Insertion,24655,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,99,Cycle,Base Deletion,24655,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,12,QualityScore,Base Substitution,80008,7808.93,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L007,24,QualityScore,Base Substitution,196175,759.14,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L007,40,QualityScore,Base Substitution,7301819,5331.19,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L007,45,QualityScore,Base Insertion,7578002,133.89,47.00,45.00,2.00,Before
REGRESSION.HCC1395_tumor.L007,45,QualityScore,Base Deletion,7578002,341.03,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L008,AA,Context,Base Substitution,522554,1337.19,26.00,29.50,-3.50,Before
REGRESSION.HCC1395_tumor.L008,AAA,Context,Base Insertion,177130,21.32,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L008,AAA,Context,Base Deletion,177130,70.41,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L008,AAC,Context,Base Insertion,85144,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AAC,Context,Base Deletion,85144,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AAG,Context,Base Insertion,134076,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AAG,Context,Base Deletion,134076,5.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AAT,Context,Base Insertion,101492,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AAT,Context,Base Deletion,101492,2.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AC,Context,Base Substitution,356166,1194.43,25.00,28.67,-3.67,Before
REGRESSION.HCC1395_tumor.L008,ACA,Context,Base Insertion,131318,4.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ACA,Context,Base Deletion,131318,6.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ACC,Context,Base Insertion,104602,3.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ACC,Context,Base Deletion,104602,2.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ACG,Context,Base Insertion,20908,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ACG,Context,Base Deletion,20908,1.83,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ACT,Context,Base Insertion,104739,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ACT,Context,Base Deletion,104739,4.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AG,Context,Base Substitution,559616,558.24,30.00,31.72,-1.72,Before
REGRESSION.HCC1395_tumor.L008,AGA,Context,Base Insertion,151288,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AGA,Context,Base Deletion,151288,6.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AGC,Context,Base Insertion,139532,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AGC,Context,Base Deletion,139532,4.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AGG,Context,Base Insertion,162907,9.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AGG,Context,Base Deletion,162907,4.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AGT,Context,Base Insertion,102401,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AGT,Context,Base Deletion,102401,5.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,AT,Context,Base Substitution,369756,483.90,29.00,32.00,-3.00,Before
REGRESSION.HCC1395_tumor.L008,ATA,Context,Base Insertion,74612,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ATA,Context,Base Deletion,74612,1.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ATC,Context,Base Insertion,79091,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ATC,Context,Base Deletion,79091,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ATG,Context,Base Insertion,114937,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ATG,Context,Base Deletion,114937,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ATT,Context,Base Insertion,108842,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,ATT,Context,Base Deletion,108842,2.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CA,Context,Base Substitution,592406,1289.07,27.00,29.88,-2.88,Before
REGRESSION.HCC1395_tumor.L008,CAA,Context,Base Insertion,112270,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CAA,Context,Base Deletion,112270,4.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CAC,Context,Base Insertion,125187,7.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CAC,Context,Base Deletion,125187,6.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CAG,Context,Base Insertion,211667,4.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CAG,Context,Base Deletion,211667,11.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CAT,Context,Base Insertion,111403,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CAT,Context,Base Deletion,111403,3.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CC,Context,Base Substitution,553218,1742.21,25.00,28.89,-3.89,Before
REGRESSION.HCC1395_tumor.L008,CCA,Context,Base Insertion,176513,3.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CCA,Context,Base Deletion,176513,2.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CCC,Context,Base Insertion,152392,4.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CCC,Context,Base Deletion,152392,9.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CCG,Context,Base Insertion,37704,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CCG,Context,Base Deletion,37704,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CCT,Context,Base Insertion,178170,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CCT,Context,Base Deletion,178170,6.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CG,Context,Base Substitution,114657,337.93,26.00,29.80,-3.80,Before
REGRESSION.HCC1395_tumor.L008,CGA,Context,Base Insertion,44463,4.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CGA,Context,Base Deletion,44463,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CGC,Context,Base Insertion,63703,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CGC,Context,Base Deletion,63703,2.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CGG,Context,Base Insertion,76977,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CGG,Context,Base Deletion,76977,2.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CGT,Context,Base Insertion,49235,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CGT,Context,Base Deletion,49235,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CT,Context,Base Substitution,596260,444.74,31.00,32.36,-1.36,Before
REGRESSION.HCC1395_tumor.L008,CTA,Context,Base Insertion,58487,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CTA,Context,Base Deletion,58487,3.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CTC,Context,Base Insertion,146101,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CTC,Context,Base Deletion,146101,8.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CTG,Context,Base Insertion,213535,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CTG,Context,Base Deletion,213535,5.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CTT,Context,Base Insertion,146055,4.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,CTT,Context,Base Deletion,146055,5.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GA,Context,Base Substitution,494542,830.89,28.00,29.62,-1.62,Before
REGRESSION.HCC1395_tumor.L008,GAA,Context,Base Insertion,140859,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GAA,Context,Base Deletion,140859,3.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GAC,Context,Base Insertion,83590,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GAC,Context,Base Deletion,83590,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GAG,Context,Base Insertion,149551,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GAG,Context,Base Deletion,149551,5.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GAT,Context,Base Insertion,83481,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GAT,Context,Base Deletion,83481,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GC,Context,Base Substitution,487771,1124.73,27.00,30.25,-3.25,Before
REGRESSION.HCC1395_tumor.L008,GCA,Context,Base Insertion,147704,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GCA,Context,Base Deletion,147704,5.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GCC,Context,Base Insertion,147269,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GCC,Context,Base Deletion,147269,5.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GCG,Context,Base Insertion,36691,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GCG,Context,Base Deletion,36691,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GCT,Context,Base Insertion,155638,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GCT,Context,Base Deletion,155638,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GG,Context,Base Substitution,576604,732.25,29.00,31.67,-2.67,Before
REGRESSION.HCC1395_tumor.L008,GGA,Context,Base Insertion,156419,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GGA,Context,Base Deletion,156419,5.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GGC,Context,Base Insertion,145250,2.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GGC,Context,Base Deletion,145250,5.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GGG,Context,Base Insertion,158398,2.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GGG,Context,Base Deletion,158398,11.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GGT,Context,Base Insertion,115029,2.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GGT,Context,Base Deletion,115029,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GT,Context,Base Substitution,407923,700.34,28.00,32.00,-4.00,Before
REGRESSION.HCC1395_tumor.L008,GTA,Context,Base Insertion,65885,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GTA,Context,Base Deletion,65885,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GTC,Context,Base Insertion,91269,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GTC,Context,Base Deletion,91269,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GTG,Context,Base Insertion,139970,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GTG,Context,Base Deletion,139970,9.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GTT,Context,Base Insertion,99660,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,GTT,Context,Base Deletion,99660,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TA,Context,Base Substitution,288240,774.31,26.00,29.67,-3.67,Before
REGRESSION.HCC1395_tumor.L008,TAA,Context,Base Insertion,87817,3.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TAA,Context,Base Deletion,87817,3.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TAC,Context,Base Insertion,59964,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TAC,Context,Base Deletion,59964,3.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TAG,Context,Base Insertion,59815,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TAG,Context,Base Deletion,59815,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TAT,Context,Base Insertion,70647,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TAT,Context,Base Deletion,70647,1.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TC,Context,Base Substitution,448901,1045.66,27.00,30.44,-3.44,Before
REGRESSION.HCC1395_tumor.L008,TCA,Context,Base Insertion,132154,2.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TCA,Context,Base Deletion,132154,6.79,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TCC,Context,Base Insertion,145295,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TCC,Context,Base Deletion,145295,4.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TCG,Context,Base Insertion,18501,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TCG,Context,Base Deletion,18501,0.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TCT,Context,Base Insertion,153590,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TCT,Context,Base Deletion,153590,5.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TG,Context,Base Substitution,586280,434.98,31.00,31.68,-0.68,Before
REGRESSION.HCC1395_tumor.L008,TGA,Context,Base Insertion,138622,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TGA,Context,Base Deletion,138622,2.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TGC,Context,Base Insertion,136120,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TGC,Context,Base Deletion,136120,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TGG,Context,Base Insertion,174018,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TGG,Context,Base Deletion,174018,3.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TGT,Context,Base Insertion,138478,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TGT,Context,Base Deletion,138478,9.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TT,Context,Base Substitution,538152,731.19,29.00,32.75,-3.75,Before
REGRESSION.HCC1395_tumor.L008,TTA,Context,Base Insertion,87076,3.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TTA,Context,Base Deletion,87076,3.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TTC,Context,Base Insertion,129639,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TTC,Context,Base Deletion,129639,6.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TTG,Context,Base Insertion,113746,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TTG,Context,Base Deletion,113746,2.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,TTT,Context,Base Insertion,179960,15.14,44.00,45.00,-1.00,Before
REGRESSION.HCC1395_tumor.L008,TTT,Context,Base Deletion,179960,56.24,42.00,45.00,-3.00,Before
REGRESSION.HCC1395_tumor.L008,-1,Cycle,Base Substitution,26534,106.48,24.00,25.78,-1.78,Before
REGRESSION.HCC1395_tumor.L008,-10,Cycle,Base Substitution,26879,41.59,30.00,31.58,-1.58,Before
REGRESSION.HCC1395_tumor.L008,-10,Cycle,Base Insertion,26879,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-10,Cycle,Base Deletion,26879,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-100,Cycle,Base Substitution,24833,49.18,28.00,29.94,-1.94,Before
REGRESSION.HCC1395_tumor.L008,-100,Cycle,Base Insertion,24615,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-100,Cycle,Base Deletion,24615,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-101,Cycle,Base Substitution,24876,55.71,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L008,-101,Cycle,Base Insertion,24670,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-101,Cycle,Base Deletion,24670,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-102,Cycle,Base Substitution,24810,32.10,30.00,30.43,-0.43,Before
REGRESSION.HCC1395_tumor.L008,-102,Cycle,Base Insertion,24593,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-102,Cycle,Base Deletion,24593,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-103,Cycle,Base Substitution,24671,55.41,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L008,-103,Cycle,Base Insertion,24432,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-103,Cycle,Base Deletion,24432,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-104,Cycle,Base Substitution,24605,46.08,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L008,-104,Cycle,Base Insertion,24340,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-104,Cycle,Base Deletion,24340,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-105,Cycle,Base Substitution,24638,53.95,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L008,-105,Cycle,Base Insertion,24368,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-105,Cycle,Base Deletion,24368,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-106,Cycle,Base Substitution,24422,42.58,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L008,-106,Cycle,Base Insertion,24167,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-106,Cycle,Base Deletion,24167,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-107,Cycle,Base Substitution,24447,35.48,29.00,30.00,-1.00,Before
REGRESSION.HCC1395_tumor.L008,-107,Cycle,Base Insertion,24191,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-107,Cycle,Base Deletion,24191,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-108,Cycle,Base Substitution,24418,53.09,28.00,29.96,-1.96,Before
REGRESSION.HCC1395_tumor.L008,-108,Cycle,Base Insertion,24165,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-108,Cycle,Base Deletion,24165,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-109,Cycle,Base Substitution,24484,53.73,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L008,-109,Cycle,Base Insertion,24220,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-109,Cycle,Base Deletion,24220,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-11,Cycle,Base Substitution,26894,41.34,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L008,-11,Cycle,Base Insertion,26894,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-11,Cycle,Base Deletion,26894,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-110,Cycle,Base Substitution,24318,43.11,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L008,-110,Cycle,Base Insertion,24025,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-110,Cycle,Base Deletion,24025,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-111,Cycle,Base Substitution,24268,42.01,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L008,-111,Cycle,Base Insertion,23966,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-111,Cycle,Base Deletion,23966,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-112,Cycle,Base Substitution,24250,53.01,29.00,30.31,-1.31,Before
REGRESSION.HCC1395_tumor.L008,-112,Cycle,Base Insertion,23956,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-112,Cycle,Base Deletion,23956,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-113,Cycle,Base Substitution,24141,64.98,28.00,29.69,-1.69,Before
REGRESSION.HCC1395_tumor.L008,-113,Cycle,Base Insertion,23837,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-113,Cycle,Base Deletion,23837,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-114,Cycle,Base Substitution,23962,39.98,29.00,29.62,-0.62,Before
REGRESSION.HCC1395_tumor.L008,-114,Cycle,Base Insertion,23648,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-114,Cycle,Base Deletion,23648,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-115,Cycle,Base Substitution,23991,46.49,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L008,-115,Cycle,Base Insertion,23668,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-115,Cycle,Base Deletion,23668,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-116,Cycle,Base Substitution,23923,39.61,29.00,29.81,-0.81,Before
REGRESSION.HCC1395_tumor.L008,-116,Cycle,Base Insertion,23591,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-116,Cycle,Base Deletion,23591,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-117,Cycle,Base Substitution,23825,45.21,28.00,29.82,-1.82,Before
REGRESSION.HCC1395_tumor.L008,-117,Cycle,Base Insertion,23503,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-117,Cycle,Base Deletion,23503,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-118,Cycle,Base Substitution,23772,49.01,28.00,29.74,-1.74,Before
REGRESSION.HCC1395_tumor.L008,-118,Cycle,Base Insertion,23460,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-118,Cycle,Base Deletion,23460,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-119,Cycle,Base Substitution,23738,56.60,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L008,-119,Cycle,Base Insertion,23415,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-119,Cycle,Base Deletion,23415,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-12,Cycle,Base Substitution,26860,31.18,31.00,31.47,-0.47,Before
REGRESSION.HCC1395_tumor.L008,-12,Cycle,Base Insertion,26860,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-12,Cycle,Base Deletion,26860,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-120,Cycle,Base Substitution,23684,57.70,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L008,-120,Cycle,Base Insertion,23378,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-120,Cycle,Base Deletion,23378,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-121,Cycle,Base Substitution,23473,42.37,28.00,29.98,-1.98,Before
REGRESSION.HCC1395_tumor.L008,-121,Cycle,Base Insertion,23166,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-121,Cycle,Base Deletion,23166,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-122,Cycle,Base Substitution,23510,43.27,29.00,30.08,-1.08,Before
REGRESSION.HCC1395_tumor.L008,-122,Cycle,Base Insertion,23202,0.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-122,Cycle,Base Deletion,23202,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-123,Cycle,Base Substitution,23447,44.79,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L008,-123,Cycle,Base Insertion,23138,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-123,Cycle,Base Deletion,23138,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-124,Cycle,Base Substitution,23339,45.87,28.00,29.71,-1.71,Before
REGRESSION.HCC1395_tumor.L008,-124,Cycle,Base Insertion,23042,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-124,Cycle,Base Deletion,23042,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-125,Cycle,Base Substitution,23370,48.20,28.00,29.58,-1.58,Before
REGRESSION.HCC1395_tumor.L008,-125,Cycle,Base Insertion,23061,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-125,Cycle,Base Deletion,23061,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-126,Cycle,Base Substitution,23231,51.75,28.00,29.50,-1.50,Before
REGRESSION.HCC1395_tumor.L008,-126,Cycle,Base Insertion,22905,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-126,Cycle,Base Deletion,22905,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-127,Cycle,Base Substitution,23204,59.57,28.00,29.38,-1.38,Before
REGRESSION.HCC1395_tumor.L008,-127,Cycle,Base Insertion,22900,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-127,Cycle,Base Deletion,22900,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-128,Cycle,Base Substitution,23012,48.30,28.00,29.90,-1.90,Before
REGRESSION.HCC1395_tumor.L008,-128,Cycle,Base Insertion,22707,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-128,Cycle,Base Deletion,22707,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-129,Cycle,Base Substitution,22918,45.82,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L008,-129,Cycle,Base Insertion,22595,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-129,Cycle,Base Deletion,22595,1.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-13,Cycle,Base Substitution,26816,41.77,30.00,31.73,-1.73,Before
REGRESSION.HCC1395_tumor.L008,-13,Cycle,Base Insertion,26816,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-13,Cycle,Base Deletion,26816,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-130,Cycle,Base Substitution,22986,49.01,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L008,-130,Cycle,Base Insertion,22666,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-130,Cycle,Base Deletion,22666,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-131,Cycle,Base Substitution,22858,39.34,29.00,29.77,-0.77,Before
REGRESSION.HCC1395_tumor.L008,-131,Cycle,Base Insertion,22538,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-131,Cycle,Base Deletion,22538,1.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-132,Cycle,Base Substitution,22828,48.75,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L008,-132,Cycle,Base Insertion,22509,0.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-132,Cycle,Base Deletion,22509,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-133,Cycle,Base Substitution,22736,43.05,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L008,-133,Cycle,Base Insertion,22422,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-133,Cycle,Base Deletion,22422,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-134,Cycle,Base Substitution,22655,49.36,28.00,30.00,-2.00,Before
REGRESSION.HCC1395_tumor.L008,-134,Cycle,Base Insertion,22314,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-134,Cycle,Base Deletion,22314,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-135,Cycle,Base Substitution,22602,41.93,28.00,29.94,-1.94,Before
REGRESSION.HCC1395_tumor.L008,-135,Cycle,Base Insertion,22259,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-135,Cycle,Base Deletion,22259,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-136,Cycle,Base Substitution,22425,43.71,28.00,29.43,-1.43,Before
REGRESSION.HCC1395_tumor.L008,-136,Cycle,Base Insertion,22079,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-136,Cycle,Base Deletion,22079,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-137,Cycle,Base Substitution,22416,47.30,28.00,29.69,-1.69,Before
REGRESSION.HCC1395_tumor.L008,-137,Cycle,Base Insertion,22059,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-137,Cycle,Base Deletion,22059,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-138,Cycle,Base Substitution,22343,39.36,29.00,29.89,-0.89,Before
REGRESSION.HCC1395_tumor.L008,-138,Cycle,Base Insertion,22004,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-138,Cycle,Base Deletion,22004,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-139,Cycle,Base Substitution,22251,49.87,28.00,29.87,-1.87,Before
REGRESSION.HCC1395_tumor.L008,-139,Cycle,Base Insertion,21930,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-139,Cycle,Base Deletion,21930,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-14,Cycle,Base Substitution,26752,44.88,30.00,31.66,-1.66,Before
REGRESSION.HCC1395_tumor.L008,-14,Cycle,Base Insertion,26752,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-14,Cycle,Base Deletion,26752,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-140,Cycle,Base Substitution,22127,37.40,29.00,29.54,-0.54,Before
REGRESSION.HCC1395_tumor.L008,-140,Cycle,Base Insertion,21746,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-140,Cycle,Base Deletion,21746,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-141,Cycle,Base Substitution,22130,36.80,29.00,29.70,-0.70,Before
REGRESSION.HCC1395_tumor.L008,-141,Cycle,Base Insertion,21743,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-141,Cycle,Base Deletion,21743,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-142,Cycle,Base Substitution,21981,38.73,28.00,29.52,-1.52,Before
REGRESSION.HCC1395_tumor.L008,-142,Cycle,Base Insertion,21540,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-142,Cycle,Base Deletion,21540,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-143,Cycle,Base Substitution,21899,39.71,28.00,29.91,-1.91,Before
REGRESSION.HCC1395_tumor.L008,-143,Cycle,Base Insertion,21428,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-143,Cycle,Base Deletion,21428,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-144,Cycle,Base Substitution,21809,35.48,29.00,29.59,-0.59,Before
REGRESSION.HCC1395_tumor.L008,-144,Cycle,Base Insertion,21314,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-144,Cycle,Base Deletion,21314,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-145,Cycle,Base Substitution,21735,44.46,28.00,29.75,-1.75,Before
REGRESSION.HCC1395_tumor.L008,-145,Cycle,Base Insertion,16588,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-145,Cycle,Base Deletion,16588,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-146,Cycle,Base Substitution,21556,73.43,28.00,30.25,-2.25,Before
REGRESSION.HCC1395_tumor.L008,-146,Cycle,Base Insertion,16518,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-146,Cycle,Base Deletion,16518,0.57,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-147,Cycle,Base Substitution,21450,240.44,23.00,30.01,-7.01,Before
REGRESSION.HCC1395_tumor.L008,-148,Cycle,Base Substitution,21357,852.28,15.00,30.26,-15.26,Before
REGRESSION.HCC1395_tumor.L008,-149,Cycle,Base Substitution,13232,779.06,14.00,30.53,-16.53,Before
REGRESSION.HCC1395_tumor.L008,-15,Cycle,Base Substitution,27006,26.76,31.00,31.48,-0.48,Before
REGRESSION.HCC1395_tumor.L008,-15,Cycle,Base Insertion,27006,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-15,Cycle,Base Deletion,27006,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-150,Cycle,Base Substitution,4705,5.84,30.00,30.59,-0.59,Before
REGRESSION.HCC1395_tumor.L008,-16,Cycle,Base Substitution,26935,41.24,30.00,31.68,-1.68,Before
REGRESSION.HCC1395_tumor.L008,-16,Cycle,Base Insertion,26935,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-16,Cycle,Base Deletion,26935,1.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-17,Cycle,Base Substitution,26778,47.46,30.00,31.08,-1.08,Before
REGRESSION.HCC1395_tumor.L008,-17,Cycle,Base Insertion,26778,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-17,Cycle,Base Deletion,26778,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-18,Cycle,Base Substitution,26817,37.55,30.00,31.87,-1.87,Before
REGRESSION.HCC1395_tumor.L008,-18,Cycle,Base Insertion,26817,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-18,Cycle,Base Deletion,26817,1.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-19,Cycle,Base Substitution,26807,45.30,30.00,31.38,-1.38,Before
REGRESSION.HCC1395_tumor.L008,-19,Cycle,Base Insertion,26807,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-19,Cycle,Base Deletion,26807,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-2,Cycle,Base Substitution,27099,70.23,27.00,28.43,-1.43,Before
REGRESSION.HCC1395_tumor.L008,-20,Cycle,Base Substitution,26812,33.06,30.00,31.83,-1.83,Before
REGRESSION.HCC1395_tumor.L008,-20,Cycle,Base Insertion,26812,0.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-20,Cycle,Base Deletion,26812,2.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-21,Cycle,Base Substitution,26664,28.63,31.00,31.72,-0.72,Before
REGRESSION.HCC1395_tumor.L008,-21,Cycle,Base Insertion,26664,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-21,Cycle,Base Deletion,26664,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-22,Cycle,Base Substitution,26809,43.57,30.00,31.93,-1.93,Before
REGRESSION.HCC1395_tumor.L008,-22,Cycle,Base Insertion,26809,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-22,Cycle,Base Deletion,26809,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-23,Cycle,Base Substitution,26794,47.42,30.00,31.54,-1.54,Before
REGRESSION.HCC1395_tumor.L008,-23,Cycle,Base Insertion,26794,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-23,Cycle,Base Deletion,26794,0.94,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-24,Cycle,Base Substitution,26743,34.40,30.00,31.50,-1.50,Before
REGRESSION.HCC1395_tumor.L008,-24,Cycle,Base Insertion,26743,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-24,Cycle,Base Deletion,26743,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-25,Cycle,Base Substitution,26715,41.50,31.00,32.01,-1.01,Before
REGRESSION.HCC1395_tumor.L008,-25,Cycle,Base Insertion,26715,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-25,Cycle,Base Deletion,26715,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-26,Cycle,Base Substitution,26708,45.82,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L008,-26,Cycle,Base Insertion,26708,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-26,Cycle,Base Deletion,26708,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-27,Cycle,Base Substitution,26718,39.13,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L008,-27,Cycle,Base Insertion,26718,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-27,Cycle,Base Deletion,26718,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-28,Cycle,Base Substitution,26571,32.48,30.00,30.08,-0.08,Before
REGRESSION.HCC1395_tumor.L008,-28,Cycle,Base Insertion,26571,1.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-28,Cycle,Base Deletion,26571,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-29,Cycle,Base Substitution,26756,35.58,30.00,30.01,-0.01,Before
REGRESSION.HCC1395_tumor.L008,-29,Cycle,Base Insertion,26755,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-29,Cycle,Base Deletion,26755,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-3,Cycle,Base Substitution,27018,65.91,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L008,-30,Cycle,Base Substitution,26732,42.74,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L008,-30,Cycle,Base Insertion,26731,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-30,Cycle,Base Deletion,26731,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-31,Cycle,Base Substitution,26676,51.39,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L008,-31,Cycle,Base Insertion,26674,0.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-31,Cycle,Base Deletion,26674,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-32,Cycle,Base Substitution,26614,30.23,30.00,30.13,-0.13,Before
REGRESSION.HCC1395_tumor.L008,-32,Cycle,Base Insertion,26612,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-32,Cycle,Base Deletion,26612,2.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-33,Cycle,Base Substitution,26665,42.41,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L008,-33,Cycle,Base Insertion,26664,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-33,Cycle,Base Deletion,26664,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-34,Cycle,Base Substitution,26652,31.70,30.00,30.42,-0.42,Before
REGRESSION.HCC1395_tumor.L008,-34,Cycle,Base Insertion,26649,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-34,Cycle,Base Deletion,26649,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-35,Cycle,Base Substitution,26635,39.41,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L008,-35,Cycle,Base Insertion,26634,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-35,Cycle,Base Deletion,26634,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-36,Cycle,Base Substitution,26752,43.59,29.00,30.51,-1.51,Before
REGRESSION.HCC1395_tumor.L008,-36,Cycle,Base Insertion,26751,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-36,Cycle,Base Deletion,26751,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-37,Cycle,Base Substitution,26591,31.44,30.00,30.15,-0.15,Before
REGRESSION.HCC1395_tumor.L008,-37,Cycle,Base Insertion,26590,0.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-37,Cycle,Base Deletion,26590,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-38,Cycle,Base Substitution,26557,38.01,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L008,-38,Cycle,Base Insertion,26556,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-38,Cycle,Base Deletion,26556,1.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-39,Cycle,Base Substitution,26564,36.98,30.00,30.73,-0.73,Before
REGRESSION.HCC1395_tumor.L008,-39,Cycle,Base Insertion,26563,0.39,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-39,Cycle,Base Deletion,26563,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-4,Cycle,Base Substitution,26951,76.52,27.00,29.80,-2.80,Before
REGRESSION.HCC1395_tumor.L008,-40,Cycle,Base Substitution,26524,33.31,30.00,30.77,-0.77,Before
REGRESSION.HCC1395_tumor.L008,-40,Cycle,Base Insertion,26523,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-40,Cycle,Base Deletion,26523,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-41,Cycle,Base Substitution,26624,40.68,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L008,-41,Cycle,Base Insertion,26623,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-41,Cycle,Base Deletion,26623,1.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-42,Cycle,Base Substitution,26514,33.89,30.00,30.62,-0.62,Before
REGRESSION.HCC1395_tumor.L008,-42,Cycle,Base Insertion,26514,0.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-42,Cycle,Base Deletion,26514,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-43,Cycle,Base Substitution,26577,41.53,29.00,30.22,-1.22,Before
REGRESSION.HCC1395_tumor.L008,-43,Cycle,Base Insertion,26577,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-43,Cycle,Base Deletion,26577,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-44,Cycle,Base Substitution,26631,48.91,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L008,-44,Cycle,Base Insertion,26627,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-44,Cycle,Base Deletion,26627,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-45,Cycle,Base Substitution,26533,35.65,30.00,30.34,-0.34,Before
REGRESSION.HCC1395_tumor.L008,-45,Cycle,Base Insertion,26525,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-45,Cycle,Base Deletion,26525,1.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-46,Cycle,Base Substitution,26537,36.24,30.00,30.39,-0.39,Before
REGRESSION.HCC1395_tumor.L008,-46,Cycle,Base Insertion,26527,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-46,Cycle,Base Deletion,26527,1.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-47,Cycle,Base Substitution,26434,34.23,30.00,30.57,-0.57,Before
REGRESSION.HCC1395_tumor.L008,-47,Cycle,Base Insertion,26424,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-47,Cycle,Base Deletion,26424,1.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-48,Cycle,Base Substitution,26532,40.76,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L008,-48,Cycle,Base Insertion,26524,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-48,Cycle,Base Deletion,26524,1.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-49,Cycle,Base Substitution,26523,43.22,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L008,-49,Cycle,Base Insertion,26515,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-49,Cycle,Base Deletion,26515,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-5,Cycle,Base Substitution,26952,46.48,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L008,-5,Cycle,Base Insertion,26952,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-5,Cycle,Base Deletion,26952,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-50,Cycle,Base Substitution,26554,38.45,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L008,-50,Cycle,Base Insertion,26542,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-50,Cycle,Base Deletion,26542,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-51,Cycle,Base Substitution,26441,32.18,30.00,30.46,-0.46,Before
REGRESSION.HCC1395_tumor.L008,-51,Cycle,Base Insertion,26425,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-51,Cycle,Base Deletion,26425,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-52,Cycle,Base Substitution,26535,39.48,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L008,-52,Cycle,Base Insertion,26510,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-52,Cycle,Base Deletion,26510,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-53,Cycle,Base Substitution,26499,48.30,29.00,30.65,-1.65,Before
REGRESSION.HCC1395_tumor.L008,-53,Cycle,Base Insertion,26474,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-53,Cycle,Base Deletion,26474,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-54,Cycle,Base Substitution,26443,36.61,30.00,30.59,-0.59,Before
REGRESSION.HCC1395_tumor.L008,-54,Cycle,Base Insertion,26412,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-54,Cycle,Base Deletion,26412,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-55,Cycle,Base Substitution,26366,52.15,29.00,30.29,-1.29,Before
REGRESSION.HCC1395_tumor.L008,-55,Cycle,Base Insertion,26336,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-55,Cycle,Base Deletion,26336,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-56,Cycle,Base Substitution,26454,42.83,29.00,30.35,-1.35,Before
REGRESSION.HCC1395_tumor.L008,-56,Cycle,Base Insertion,26421,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-56,Cycle,Base Deletion,26421,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-57,Cycle,Base Substitution,26280,32.76,30.00,30.68,-0.68,Before
REGRESSION.HCC1395_tumor.L008,-57,Cycle,Base Insertion,26243,1.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-57,Cycle,Base Deletion,26243,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-58,Cycle,Base Substitution,26365,43.84,29.00,30.90,-1.90,Before
REGRESSION.HCC1395_tumor.L008,-58,Cycle,Base Insertion,26322,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-58,Cycle,Base Deletion,26322,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-59,Cycle,Base Substitution,26430,42.16,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L008,-59,Cycle,Base Insertion,26391,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-59,Cycle,Base Deletion,26391,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-6,Cycle,Base Substitution,26964,58.11,29.00,30.96,-1.96,Before
REGRESSION.HCC1395_tumor.L008,-6,Cycle,Base Insertion,26964,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-6,Cycle,Base Deletion,26964,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-60,Cycle,Base Substitution,26438,49.50,29.00,30.88,-1.88,Before
REGRESSION.HCC1395_tumor.L008,-60,Cycle,Base Insertion,26393,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-60,Cycle,Base Deletion,26393,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-61,Cycle,Base Substitution,26381,37.62,29.00,30.60,-1.60,Before
REGRESSION.HCC1395_tumor.L008,-61,Cycle,Base Insertion,26330,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-61,Cycle,Base Deletion,26330,2.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-62,Cycle,Base Substitution,26467,42.16,29.00,30.87,-1.87,Before
REGRESSION.HCC1395_tumor.L008,-62,Cycle,Base Insertion,26413,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-62,Cycle,Base Deletion,26413,2.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-63,Cycle,Base Substitution,26337,55.99,29.00,30.79,-1.79,Before
REGRESSION.HCC1395_tumor.L008,-63,Cycle,Base Insertion,26266,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-63,Cycle,Base Deletion,26266,2.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-64,Cycle,Base Substitution,26254,39.22,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L008,-64,Cycle,Base Insertion,26183,0.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-64,Cycle,Base Deletion,26183,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-65,Cycle,Base Substitution,26220,41.86,29.00,30.51,-1.51,Before
REGRESSION.HCC1395_tumor.L008,-65,Cycle,Base Insertion,26138,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-65,Cycle,Base Deletion,26138,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-66,Cycle,Base Substitution,26210,28.63,30.00,30.51,-0.51,Before
REGRESSION.HCC1395_tumor.L008,-66,Cycle,Base Insertion,26121,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-66,Cycle,Base Deletion,26121,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-67,Cycle,Base Substitution,26215,32.36,30.00,30.78,-0.78,Before
REGRESSION.HCC1395_tumor.L008,-67,Cycle,Base Insertion,26126,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-67,Cycle,Base Deletion,26126,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-68,Cycle,Base Substitution,26276,44.96,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L008,-68,Cycle,Base Insertion,26183,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-68,Cycle,Base Deletion,26183,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-69,Cycle,Base Substitution,26238,38.64,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L008,-69,Cycle,Base Insertion,26153,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-69,Cycle,Base Deletion,26153,2.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-7,Cycle,Base Substitution,26879,41.31,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L008,-7,Cycle,Base Insertion,26879,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-7,Cycle,Base Deletion,26879,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-70,Cycle,Base Substitution,26234,36.63,30.00,30.64,-0.64,Before
REGRESSION.HCC1395_tumor.L008,-70,Cycle,Base Insertion,26150,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-70,Cycle,Base Deletion,26150,2.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-71,Cycle,Base Substitution,25999,35.90,30.00,30.38,-0.38,Before
REGRESSION.HCC1395_tumor.L008,-71,Cycle,Base Insertion,25904,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-71,Cycle,Base Deletion,25904,1.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-72,Cycle,Base Substitution,25987,40.83,29.00,30.64,-1.64,Before
REGRESSION.HCC1395_tumor.L008,-72,Cycle,Base Insertion,25886,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-72,Cycle,Base Deletion,25886,2.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-73,Cycle,Base Substitution,26154,41.69,29.00,30.67,-1.67,Before
REGRESSION.HCC1395_tumor.L008,-73,Cycle,Base Insertion,26034,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-73,Cycle,Base Deletion,26034,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-74,Cycle,Base Substitution,26046,31.83,30.00,30.60,-0.60,Before
REGRESSION.HCC1395_tumor.L008,-74,Cycle,Base Insertion,25928,0.21,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-74,Cycle,Base Deletion,25928,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-75,Cycle,Base Substitution,25927,39.85,29.00,30.69,-1.69,Before
REGRESSION.HCC1395_tumor.L008,-75,Cycle,Base Insertion,25799,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-75,Cycle,Base Deletion,25799,1.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-76,Cycle,Base Substitution,25923,34.93,30.00,30.44,-0.44,Before
REGRESSION.HCC1395_tumor.L008,-76,Cycle,Base Insertion,25777,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-76,Cycle,Base Deletion,25777,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-77,Cycle,Base Substitution,25842,39.44,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L008,-77,Cycle,Base Insertion,25703,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-77,Cycle,Base Deletion,25703,1.72,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-78,Cycle,Base Substitution,25896,44.75,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L008,-78,Cycle,Base Insertion,25754,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-78,Cycle,Base Deletion,25754,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-79,Cycle,Base Substitution,25814,46.23,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L008,-79,Cycle,Base Insertion,25658,0.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-79,Cycle,Base Deletion,25658,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-8,Cycle,Base Substitution,26920,44.93,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L008,-8,Cycle,Base Insertion,26920,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-8,Cycle,Base Deletion,26920,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-80,Cycle,Base Substitution,25769,43.24,30.00,31.02,-1.02,Before
REGRESSION.HCC1395_tumor.L008,-80,Cycle,Base Insertion,25609,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-80,Cycle,Base Deletion,25609,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-81,Cycle,Base Substitution,25804,39.91,29.00,30.45,-1.45,Before
REGRESSION.HCC1395_tumor.L008,-81,Cycle,Base Insertion,25635,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-81,Cycle,Base Deletion,25635,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-82,Cycle,Base Substitution,25714,44.99,29.00,30.46,-1.46,Before
REGRESSION.HCC1395_tumor.L008,-82,Cycle,Base Insertion,25550,0.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-82,Cycle,Base Deletion,25550,1.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-83,Cycle,Base Substitution,25713,49.81,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L008,-83,Cycle,Base Insertion,25540,0.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-83,Cycle,Base Deletion,25540,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-84,Cycle,Base Substitution,25593,40.86,29.00,30.44,-1.44,Before
REGRESSION.HCC1395_tumor.L008,-84,Cycle,Base Insertion,25417,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-84,Cycle,Base Deletion,25417,1.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-85,Cycle,Base Substitution,25548,46.73,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L008,-85,Cycle,Base Insertion,25393,0.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-85,Cycle,Base Deletion,25393,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-86,Cycle,Base Substitution,25585,39.00,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L008,-86,Cycle,Base Insertion,25407,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-86,Cycle,Base Deletion,25407,1.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-87,Cycle,Base Substitution,25486,50.82,29.00,30.14,-1.14,Before
REGRESSION.HCC1395_tumor.L008,-87,Cycle,Base Insertion,25319,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-87,Cycle,Base Deletion,25319,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-88,Cycle,Base Substitution,25506,45.47,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L008,-88,Cycle,Base Insertion,25333,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-88,Cycle,Base Deletion,25333,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-89,Cycle,Base Substitution,25442,49.53,29.00,30.20,-1.20,Before
REGRESSION.HCC1395_tumor.L008,-89,Cycle,Base Insertion,25262,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-89,Cycle,Base Deletion,25262,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-9,Cycle,Base Substitution,26978,50.49,30.00,31.09,-1.09,Before
REGRESSION.HCC1395_tumor.L008,-9,Cycle,Base Insertion,26978,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-9,Cycle,Base Deletion,26978,1.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-90,Cycle,Base Substitution,25461,39.19,29.00,30.49,-1.49,Before
REGRESSION.HCC1395_tumor.L008,-90,Cycle,Base Insertion,25279,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-90,Cycle,Base Deletion,25279,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-91,Cycle,Base Substitution,25459,46.42,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L008,-91,Cycle,Base Insertion,25271,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-91,Cycle,Base Deletion,25271,0.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-92,Cycle,Base Substitution,25310,50.17,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L008,-92,Cycle,Base Insertion,25110,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-92,Cycle,Base Deletion,25110,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-93,Cycle,Base Substitution,25236,55.09,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L008,-93,Cycle,Base Insertion,25009,0.09,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-93,Cycle,Base Deletion,25009,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-94,Cycle,Base Substitution,25111,34.68,30.00,30.47,-0.47,Before
REGRESSION.HCC1395_tumor.L008,-94,Cycle,Base Insertion,24883,0.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-94,Cycle,Base Deletion,24883,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-95,Cycle,Base Substitution,25218,38.08,29.00,29.98,-0.98,Before
REGRESSION.HCC1395_tumor.L008,-95,Cycle,Base Insertion,24975,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-95,Cycle,Base Deletion,24975,1.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-96,Cycle,Base Substitution,25114,55.88,29.00,30.34,-1.34,Before
REGRESSION.HCC1395_tumor.L008,-96,Cycle,Base Insertion,24871,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-96,Cycle,Base Deletion,24871,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-97,Cycle,Base Substitution,25091,47.89,29.00,30.30,-1.30,Before
REGRESSION.HCC1395_tumor.L008,-97,Cycle,Base Insertion,24849,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-97,Cycle,Base Deletion,24849,0.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-98,Cycle,Base Substitution,24889,49.90,29.00,30.09,-1.09,Before
REGRESSION.HCC1395_tumor.L008,-98,Cycle,Base Insertion,24661,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-98,Cycle,Base Deletion,24661,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-99,Cycle,Base Substitution,24952,45.54,29.00,30.41,-1.41,Before
REGRESSION.HCC1395_tumor.L008,-99,Cycle,Base Insertion,24735,0.82,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,-99,Cycle,Base Deletion,24735,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,1,Cycle,Base Substitution,26600,54.76,28.00,28.47,-0.47,Before
REGRESSION.HCC1395_tumor.L008,10,Cycle,Base Substitution,26845,31.80,30.00,31.08,-1.08,Before
REGRESSION.HCC1395_tumor.L008,10,Cycle,Base Insertion,26845,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,10,Cycle,Base Deletion,26845,1.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,100,Cycle,Base Substitution,24723,52.25,29.00,30.13,-1.13,Before
REGRESSION.HCC1395_tumor.L008,100,Cycle,Base Insertion,24507,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,100,Cycle,Base Deletion,24507,1.96,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,101,Cycle,Base Substitution,24737,26.19,30.00,30.49,-0.49,Before
REGRESSION.HCC1395_tumor.L008,101,Cycle,Base Insertion,24533,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,101,Cycle,Base Deletion,24533,1.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,102,Cycle,Base Substitution,24685,29.19,30.00,30.66,-0.66,Before
REGRESSION.HCC1395_tumor.L008,102,Cycle,Base Insertion,24464,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,102,Cycle,Base Deletion,24464,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,103,Cycle,Base Substitution,24607,41.21,29.00,30.37,-1.37,Before
REGRESSION.HCC1395_tumor.L008,103,Cycle,Base Insertion,24359,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,103,Cycle,Base Deletion,24359,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,104,Cycle,Base Substitution,24586,33.79,30.00,30.37,-0.37,Before
REGRESSION.HCC1395_tumor.L008,104,Cycle,Base Insertion,24337,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,104,Cycle,Base Deletion,24337,1.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,105,Cycle,Base Substitution,24523,38.33,29.00,30.54,-1.54,Before
REGRESSION.HCC1395_tumor.L008,105,Cycle,Base Insertion,24260,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,105,Cycle,Base Deletion,24260,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,106,Cycle,Base Substitution,24537,40.93,29.00,30.78,-1.78,Before
REGRESSION.HCC1395_tumor.L008,106,Cycle,Base Insertion,24290,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,106,Cycle,Base Deletion,24290,1.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,107,Cycle,Base Substitution,24365,41.41,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L008,107,Cycle,Base Insertion,24120,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,107,Cycle,Base Deletion,24120,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,108,Cycle,Base Substitution,24270,51.51,29.00,30.56,-1.56,Before
REGRESSION.HCC1395_tumor.L008,108,Cycle,Base Insertion,24029,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,108,Cycle,Base Deletion,24029,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,109,Cycle,Base Substitution,24287,31.13,30.00,30.81,-0.81,Before
REGRESSION.HCC1395_tumor.L008,109,Cycle,Base Insertion,24032,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,109,Cycle,Base Deletion,24032,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,11,Cycle,Base Substitution,26874,32.81,30.00,30.87,-0.87,Before
REGRESSION.HCC1395_tumor.L008,11,Cycle,Base Insertion,26874,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,11,Cycle,Base Deletion,26874,1.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,110,Cycle,Base Substitution,24302,47.60,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L008,110,Cycle,Base Insertion,24019,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,110,Cycle,Base Deletion,24019,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,111,Cycle,Base Substitution,24308,40.94,29.00,30.12,-1.12,Before
REGRESSION.HCC1395_tumor.L008,111,Cycle,Base Insertion,24001,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,111,Cycle,Base Deletion,24001,1.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,112,Cycle,Base Substitution,24143,48.26,29.00,30.39,-1.39,Before
REGRESSION.HCC1395_tumor.L008,112,Cycle,Base Insertion,23831,0.11,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,112,Cycle,Base Deletion,23831,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,113,Cycle,Base Substitution,24236,43.68,29.00,30.18,-1.18,Before
REGRESSION.HCC1395_tumor.L008,113,Cycle,Base Insertion,23923,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,113,Cycle,Base Deletion,23923,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,114,Cycle,Base Substitution,24052,32.97,30.00,30.30,-0.30,Before
REGRESSION.HCC1395_tumor.L008,114,Cycle,Base Insertion,23740,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,114,Cycle,Base Deletion,23740,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,115,Cycle,Base Substitution,23924,41.11,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L008,115,Cycle,Base Insertion,23598,0.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,115,Cycle,Base Deletion,23598,1.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,116,Cycle,Base Substitution,23875,40.08,29.00,30.38,-1.38,Before
REGRESSION.HCC1395_tumor.L008,116,Cycle,Base Insertion,23540,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,116,Cycle,Base Deletion,23540,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,117,Cycle,Base Substitution,23740,47.32,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L008,117,Cycle,Base Insertion,23409,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,117,Cycle,Base Deletion,23409,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,118,Cycle,Base Substitution,23602,35.72,29.00,30.19,-1.19,Before
REGRESSION.HCC1395_tumor.L008,118,Cycle,Base Insertion,23306,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,118,Cycle,Base Deletion,23306,0.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,119,Cycle,Base Substitution,23721,48.50,29.00,30.21,-1.21,Before
REGRESSION.HCC1395_tumor.L008,119,Cycle,Base Insertion,23419,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,119,Cycle,Base Deletion,23419,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,12,Cycle,Base Substitution,26865,35.82,30.00,31.46,-1.46,Before
REGRESSION.HCC1395_tumor.L008,12,Cycle,Base Insertion,26865,0.86,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,12,Cycle,Base Deletion,26865,1.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,120,Cycle,Base Substitution,23594,42.26,29.00,30.23,-1.23,Before
REGRESSION.HCC1395_tumor.L008,120,Cycle,Base Insertion,23305,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,120,Cycle,Base Deletion,23305,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,121,Cycle,Base Substitution,23648,55.48,29.00,30.15,-1.15,Before
REGRESSION.HCC1395_tumor.L008,121,Cycle,Base Insertion,23331,0.23,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,121,Cycle,Base Deletion,23331,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,122,Cycle,Base Substitution,23334,44.90,28.00,29.80,-1.80,Before
REGRESSION.HCC1395_tumor.L008,122,Cycle,Base Insertion,23017,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,122,Cycle,Base Deletion,23017,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,123,Cycle,Base Substitution,23322,49.78,29.00,30.04,-1.04,Before
REGRESSION.HCC1395_tumor.L008,123,Cycle,Base Insertion,23014,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,123,Cycle,Base Deletion,23014,0.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,124,Cycle,Base Substitution,23310,55.41,28.00,29.94,-1.94,Before
REGRESSION.HCC1395_tumor.L008,124,Cycle,Base Insertion,23008,0.25,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,124,Cycle,Base Deletion,23008,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,125,Cycle,Base Substitution,23309,37.20,29.00,29.93,-0.93,Before
REGRESSION.HCC1395_tumor.L008,125,Cycle,Base Insertion,23007,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,125,Cycle,Base Deletion,23007,0.95,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,126,Cycle,Base Substitution,23246,49.57,28.00,29.91,-1.91,Before
REGRESSION.HCC1395_tumor.L008,126,Cycle,Base Insertion,22951,0.40,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,126,Cycle,Base Deletion,22951,1.07,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,127,Cycle,Base Substitution,23125,37.81,29.00,30.28,-1.28,Before
REGRESSION.HCC1395_tumor.L008,127,Cycle,Base Insertion,22839,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,127,Cycle,Base Deletion,22839,0.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,128,Cycle,Base Substitution,23016,49.44,28.00,29.72,-1.72,Before
REGRESSION.HCC1395_tumor.L008,128,Cycle,Base Insertion,22722,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,128,Cycle,Base Deletion,22722,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,129,Cycle,Base Substitution,22988,38.86,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L008,129,Cycle,Base Insertion,22688,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,129,Cycle,Base Deletion,22688,1.85,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,13,Cycle,Base Substitution,26777,36.53,30.00,30.98,-0.98,Before
REGRESSION.HCC1395_tumor.L008,13,Cycle,Base Insertion,26777,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,13,Cycle,Base Deletion,26777,2.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,130,Cycle,Base Substitution,22910,40.36,29.00,30.16,-1.16,Before
REGRESSION.HCC1395_tumor.L008,130,Cycle,Base Insertion,22599,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,130,Cycle,Base Deletion,22599,2.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,131,Cycle,Base Substitution,22945,52.00,29.00,30.05,-1.05,Before
REGRESSION.HCC1395_tumor.L008,131,Cycle,Base Insertion,22638,0.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,131,Cycle,Base Deletion,22638,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,132,Cycle,Base Substitution,22847,50.66,28.00,29.67,-1.67,Before
REGRESSION.HCC1395_tumor.L008,132,Cycle,Base Insertion,22525,0.34,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,132,Cycle,Base Deletion,22525,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,133,Cycle,Base Substitution,22643,54.43,29.00,30.02,-1.02,Before
REGRESSION.HCC1395_tumor.L008,133,Cycle,Base Insertion,22340,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,133,Cycle,Base Deletion,22340,1.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,134,Cycle,Base Substitution,22540,41.92,28.00,29.96,-1.96,Before
REGRESSION.HCC1395_tumor.L008,134,Cycle,Base Insertion,22220,0.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,134,Cycle,Base Deletion,22220,0.70,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,135,Cycle,Base Substitution,22487,45.74,28.00,29.61,-1.61,Before
REGRESSION.HCC1395_tumor.L008,135,Cycle,Base Insertion,22138,1.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,135,Cycle,Base Deletion,22138,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,136,Cycle,Base Substitution,22398,46.96,29.00,30.24,-1.24,Before
REGRESSION.HCC1395_tumor.L008,136,Cycle,Base Insertion,22075,1.06,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,136,Cycle,Base Deletion,22075,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,137,Cycle,Base Substitution,22403,43.49,28.00,29.73,-1.73,Before
REGRESSION.HCC1395_tumor.L008,137,Cycle,Base Insertion,22074,0.31,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,137,Cycle,Base Deletion,22074,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,138,Cycle,Base Substitution,22294,40.87,28.00,29.98,-1.98,Before
REGRESSION.HCC1395_tumor.L008,138,Cycle,Base Insertion,21986,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,138,Cycle,Base Deletion,21986,0.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,139,Cycle,Base Substitution,22251,47.75,28.00,29.92,-1.92,Before
REGRESSION.HCC1395_tumor.L008,139,Cycle,Base Insertion,21937,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,139,Cycle,Base Deletion,21937,0.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,14,Cycle,Base Substitution,26727,22.60,31.00,31.25,-0.25,Before
REGRESSION.HCC1395_tumor.L008,14,Cycle,Base Insertion,26727,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,14,Cycle,Base Deletion,26727,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,140,Cycle,Base Substitution,22135,37.58,29.00,29.66,-0.66,Before
REGRESSION.HCC1395_tumor.L008,140,Cycle,Base Insertion,21807,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,140,Cycle,Base Deletion,21807,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,141,Cycle,Base Substitution,22172,40.15,28.00,29.95,-1.95,Before
REGRESSION.HCC1395_tumor.L008,141,Cycle,Base Insertion,21835,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,141,Cycle,Base Deletion,21835,0.89,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,142,Cycle,Base Substitution,22101,47.77,28.00,29.77,-1.77,Before
REGRESSION.HCC1395_tumor.L008,142,Cycle,Base Insertion,21750,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,142,Cycle,Base Deletion,21750,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,143,Cycle,Base Substitution,21976,46.52,28.00,29.32,-1.32,Before
REGRESSION.HCC1395_tumor.L008,143,Cycle,Base Insertion,21625,0.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,143,Cycle,Base Deletion,21625,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,144,Cycle,Base Substitution,21883,45.68,29.00,30.06,-1.06,Before
REGRESSION.HCC1395_tumor.L008,144,Cycle,Base Insertion,21515,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,144,Cycle,Base Deletion,21515,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,145,Cycle,Base Substitution,21843,41.81,28.00,29.78,-1.78,Before
REGRESSION.HCC1395_tumor.L008,145,Cycle,Base Insertion,21456,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,145,Cycle,Base Deletion,21456,0.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,146,Cycle,Base Substitution,21837,38.33,29.00,29.95,-0.95,Before
REGRESSION.HCC1395_tumor.L008,146,Cycle,Base Insertion,21468,0.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,146,Cycle,Base Deletion,21468,0.20,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,147,Cycle,Base Substitution,21602,53.33,28.00,29.81,-1.81,Before
REGRESSION.HCC1395_tumor.L008,148,Cycle,Base Substitution,21477,53.30,28.00,29.76,-1.76,Before
REGRESSION.HCC1395_tumor.L008,149,Cycle,Base Substitution,21424,47.65,28.00,29.59,-1.59,Before
REGRESSION.HCC1395_tumor.L008,15,Cycle,Base Substitution,26782,34.28,30.00,31.49,-1.49,Before
REGRESSION.HCC1395_tumor.L008,15,Cycle,Base Insertion,26782,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,15,Cycle,Base Deletion,26782,1.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,150,Cycle,Base Substitution,21366,42.19,28.00,29.93,-1.93,Before
REGRESSION.HCC1395_tumor.L008,16,Cycle,Base Substitution,26704,24.67,32.00,33.01,-1.01,Before
REGRESSION.HCC1395_tumor.L008,16,Cycle,Base Insertion,26704,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,16,Cycle,Base Deletion,26704,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,17,Cycle,Base Substitution,26689,27.32,31.00,32.73,-1.73,Before
REGRESSION.HCC1395_tumor.L008,17,Cycle,Base Insertion,26689,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,17,Cycle,Base Deletion,26689,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,18,Cycle,Base Substitution,26741,18.35,32.00,32.52,-0.52,Before
REGRESSION.HCC1395_tumor.L008,18,Cycle,Base Insertion,26741,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,18,Cycle,Base Deletion,26741,2.02,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,19,Cycle,Base Substitution,26747,23.04,32.00,32.92,-0.92,Before
REGRESSION.HCC1395_tumor.L008,19,Cycle,Base Insertion,26747,1.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,19,Cycle,Base Deletion,26747,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,2,Cycle,Base Substitution,26963,45.12,29.00,30.32,-1.32,Before
REGRESSION.HCC1395_tumor.L008,20,Cycle,Base Substitution,26692,24.57,32.00,32.85,-0.85,Before
REGRESSION.HCC1395_tumor.L008,20,Cycle,Base Insertion,26692,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,20,Cycle,Base Deletion,26692,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,21,Cycle,Base Substitution,26616,25.59,32.00,32.67,-0.67,Before
REGRESSION.HCC1395_tumor.L008,21,Cycle,Base Insertion,26616,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,21,Cycle,Base Deletion,26616,1.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,22,Cycle,Base Substitution,26806,16.61,33.00,33.00,-0.00,Before
REGRESSION.HCC1395_tumor.L008,22,Cycle,Base Insertion,26806,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,22,Cycle,Base Deletion,26806,1.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,23,Cycle,Base Substitution,26621,21.25,32.00,32.73,-0.73,Before
REGRESSION.HCC1395_tumor.L008,23,Cycle,Base Insertion,26621,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,23,Cycle,Base Deletion,26621,1.67,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,24,Cycle,Base Substitution,26664,22.20,33.00,33.24,-0.24,Before
REGRESSION.HCC1395_tumor.L008,24,Cycle,Base Insertion,26664,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,24,Cycle,Base Deletion,26664,2.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,25,Cycle,Base Substitution,26671,24.66,32.00,32.57,-0.57,Before
REGRESSION.HCC1395_tumor.L008,25,Cycle,Base Insertion,26671,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,25,Cycle,Base Deletion,26671,1.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,26,Cycle,Base Substitution,26579,34.05,30.00,31.51,-1.51,Before
REGRESSION.HCC1395_tumor.L008,26,Cycle,Base Insertion,26579,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,26,Cycle,Base Deletion,26579,1.74,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,27,Cycle,Base Substitution,26682,30.75,31.00,31.17,-0.17,Before
REGRESSION.HCC1395_tumor.L008,27,Cycle,Base Insertion,26682,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,27,Cycle,Base Deletion,26682,1.98,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,28,Cycle,Base Substitution,26709,25.16,31.00,31.38,-0.38,Before
REGRESSION.HCC1395_tumor.L008,28,Cycle,Base Insertion,26709,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,28,Cycle,Base Deletion,26709,1.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,29,Cycle,Base Substitution,26655,26.20,31.00,31.37,-0.37,Before
REGRESSION.HCC1395_tumor.L008,29,Cycle,Base Insertion,26654,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,29,Cycle,Base Deletion,26654,1.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,3,Cycle,Base Substitution,26979,53.76,30.00,31.20,-1.20,Before
REGRESSION.HCC1395_tumor.L008,30,Cycle,Base Substitution,26659,32.18,30.00,31.56,-1.56,Before
REGRESSION.HCC1395_tumor.L008,30,Cycle,Base Insertion,26658,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,30,Cycle,Base Deletion,26658,2.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,31,Cycle,Base Substitution,26526,27.82,31.00,31.65,-0.65,Before
REGRESSION.HCC1395_tumor.L008,31,Cycle,Base Insertion,26524,0.71,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,31,Cycle,Base Deletion,26524,2.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,32,Cycle,Base Substitution,26616,35.41,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L008,32,Cycle,Base Insertion,26613,0.97,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,32,Cycle,Base Deletion,26613,2.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,33,Cycle,Base Substitution,26608,28.09,31.00,31.12,-0.12,Before
REGRESSION.HCC1395_tumor.L008,33,Cycle,Base Insertion,26607,0.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,33,Cycle,Base Deletion,26607,2.03,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,34,Cycle,Base Substitution,26565,32.32,30.00,31.10,-1.10,Before
REGRESSION.HCC1395_tumor.L008,34,Cycle,Base Insertion,26562,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,34,Cycle,Base Deletion,26562,1.66,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,35,Cycle,Base Substitution,26619,27.81,31.00,31.52,-0.52,Before
REGRESSION.HCC1395_tumor.L008,35,Cycle,Base Insertion,26617,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,35,Cycle,Base Deletion,26617,1.91,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,36,Cycle,Base Substitution,26537,33.66,30.00,31.37,-1.37,Before
REGRESSION.HCC1395_tumor.L008,36,Cycle,Base Insertion,26537,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,36,Cycle,Base Deletion,26537,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,37,Cycle,Base Substitution,26522,31.38,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L008,37,Cycle,Base Insertion,26522,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,37,Cycle,Base Deletion,26522,1.12,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,38,Cycle,Base Substitution,26528,32.01,30.00,31.66,-1.66,Before
REGRESSION.HCC1395_tumor.L008,38,Cycle,Base Insertion,26526,0.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,38,Cycle,Base Deletion,26526,0.90,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,39,Cycle,Base Substitution,26543,38.39,30.00,31.41,-1.41,Before
REGRESSION.HCC1395_tumor.L008,39,Cycle,Base Insertion,26542,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,39,Cycle,Base Deletion,26542,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,4,Cycle,Base Substitution,27038,61.90,29.00,31.13,-2.13,Before
REGRESSION.HCC1395_tumor.L008,40,Cycle,Base Substitution,26555,32.24,30.00,31.63,-1.63,Before
REGRESSION.HCC1395_tumor.L008,40,Cycle,Base Insertion,26554,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,40,Cycle,Base Deletion,26554,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,41,Cycle,Base Substitution,26571,30.75,31.00,31.54,-0.54,Before
REGRESSION.HCC1395_tumor.L008,41,Cycle,Base Insertion,26569,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,41,Cycle,Base Deletion,26569,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,42,Cycle,Base Substitution,26519,37.54,30.00,31.23,-1.23,Before
REGRESSION.HCC1395_tumor.L008,42,Cycle,Base Insertion,26519,0.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,42,Cycle,Base Deletion,26519,2.00,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,43,Cycle,Base Substitution,26546,22.35,31.00,31.59,-0.59,Before
REGRESSION.HCC1395_tumor.L008,43,Cycle,Base Insertion,26546,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,43,Cycle,Base Deletion,26546,1.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,44,Cycle,Base Substitution,26532,34.15,30.00,31.12,-1.12,Before
REGRESSION.HCC1395_tumor.L008,44,Cycle,Base Insertion,26529,0.45,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,44,Cycle,Base Deletion,26529,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,45,Cycle,Base Substitution,26445,33.38,30.00,31.69,-1.69,Before
REGRESSION.HCC1395_tumor.L008,45,Cycle,Base Insertion,26439,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,45,Cycle,Base Deletion,26439,1.33,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,46,Cycle,Base Substitution,26416,23.24,31.00,31.58,-0.58,Before
REGRESSION.HCC1395_tumor.L008,46,Cycle,Base Insertion,26406,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,46,Cycle,Base Deletion,26406,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,47,Cycle,Base Substitution,26416,31.04,31.00,31.51,-0.51,Before
REGRESSION.HCC1395_tumor.L008,47,Cycle,Base Insertion,26405,0.92,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,47,Cycle,Base Deletion,26405,1.10,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,48,Cycle,Base Substitution,26471,33.64,30.00,31.35,-1.35,Before
REGRESSION.HCC1395_tumor.L008,48,Cycle,Base Insertion,26465,0.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,48,Cycle,Base Deletion,26465,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,49,Cycle,Base Substitution,26466,39.67,29.00,30.97,-1.97,Before
REGRESSION.HCC1395_tumor.L008,49,Cycle,Base Insertion,26457,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,49,Cycle,Base Deletion,26457,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,5,Cycle,Base Substitution,26968,38.74,30.00,31.53,-1.53,Before
REGRESSION.HCC1395_tumor.L008,5,Cycle,Base Insertion,26968,0.37,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,5,Cycle,Base Deletion,26968,0.50,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,50,Cycle,Base Substitution,26440,29.13,31.00,31.58,-0.58,Before
REGRESSION.HCC1395_tumor.L008,50,Cycle,Base Insertion,26427,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,50,Cycle,Base Deletion,26427,1.01,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,51,Cycle,Base Substitution,26341,35.90,30.00,31.43,-1.43,Before
REGRESSION.HCC1395_tumor.L008,51,Cycle,Base Insertion,26322,0.73,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,51,Cycle,Base Deletion,26322,1.48,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,52,Cycle,Base Substitution,26393,30.39,31.00,31.72,-0.72,Before
REGRESSION.HCC1395_tumor.L008,52,Cycle,Base Insertion,26370,0.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,52,Cycle,Base Deletion,26370,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,53,Cycle,Base Substitution,26381,27.76,31.00,31.46,-0.46,Before
REGRESSION.HCC1395_tumor.L008,53,Cycle,Base Insertion,26361,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,53,Cycle,Base Deletion,26361,1.49,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,54,Cycle,Base Substitution,26334,38.26,29.00,30.80,-1.80,Before
REGRESSION.HCC1395_tumor.L008,54,Cycle,Base Insertion,26312,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,54,Cycle,Base Deletion,26312,1.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,55,Cycle,Base Substitution,26302,24.21,31.00,31.64,-0.64,Before
REGRESSION.HCC1395_tumor.L008,55,Cycle,Base Insertion,26272,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,55,Cycle,Base Deletion,26272,1.15,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,56,Cycle,Base Substitution,26472,26.84,31.00,31.49,-0.49,Before
REGRESSION.HCC1395_tumor.L008,56,Cycle,Base Insertion,26436,0.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,56,Cycle,Base Deletion,26436,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,57,Cycle,Base Substitution,26305,31.03,31.00,31.06,-0.06,Before
REGRESSION.HCC1395_tumor.L008,57,Cycle,Base Insertion,26270,0.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,57,Cycle,Base Deletion,26270,1.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,58,Cycle,Base Substitution,26367,31.07,31.00,31.40,-0.40,Before
REGRESSION.HCC1395_tumor.L008,58,Cycle,Base Insertion,26325,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,58,Cycle,Base Deletion,26325,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,59,Cycle,Base Substitution,26393,31.41,31.00,31.48,-0.48,Before
REGRESSION.HCC1395_tumor.L008,59,Cycle,Base Insertion,26357,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,59,Cycle,Base Deletion,26357,1.51,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,6,Cycle,Base Substitution,26905,35.16,30.00,31.30,-1.30,Before
REGRESSION.HCC1395_tumor.L008,6,Cycle,Base Insertion,26905,0.44,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,6,Cycle,Base Deletion,26905,0.54,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,60,Cycle,Base Substitution,26238,33.85,30.00,31.05,-1.05,Before
REGRESSION.HCC1395_tumor.L008,60,Cycle,Base Insertion,26198,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,60,Cycle,Base Deletion,26198,1.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,61,Cycle,Base Substitution,26288,34.15,30.00,31.38,-1.38,Before
REGRESSION.HCC1395_tumor.L008,61,Cycle,Base Insertion,26237,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,61,Cycle,Base Deletion,26237,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,62,Cycle,Base Substitution,26192,35.15,30.00,30.94,-0.94,Before
REGRESSION.HCC1395_tumor.L008,62,Cycle,Base Insertion,26137,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,62,Cycle,Base Deletion,26137,1.08,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,63,Cycle,Base Substitution,26175,38.69,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L008,63,Cycle,Base Insertion,26108,0.61,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,63,Cycle,Base Deletion,26108,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,64,Cycle,Base Substitution,26122,45.04,29.00,30.99,-1.99,Before
REGRESSION.HCC1395_tumor.L008,64,Cycle,Base Insertion,26044,0.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,64,Cycle,Base Deletion,26044,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,65,Cycle,Base Substitution,26172,33.68,30.00,31.33,-1.33,Before
REGRESSION.HCC1395_tumor.L008,65,Cycle,Base Insertion,26096,0.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,65,Cycle,Base Deletion,26096,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,66,Cycle,Base Substitution,26050,30.93,30.00,31.21,-1.21,Before
REGRESSION.HCC1395_tumor.L008,66,Cycle,Base Insertion,25964,0.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,66,Cycle,Base Deletion,25964,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,67,Cycle,Base Substitution,26079,36.40,30.00,31.08,-1.08,Before
REGRESSION.HCC1395_tumor.L008,67,Cycle,Base Insertion,25996,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,67,Cycle,Base Deletion,25996,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,68,Cycle,Base Substitution,26078,43.48,29.00,30.82,-1.82,Before
REGRESSION.HCC1395_tumor.L008,68,Cycle,Base Insertion,25992,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,68,Cycle,Base Deletion,25992,1.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,69,Cycle,Base Substitution,26132,31.83,30.00,31.18,-1.18,Before
REGRESSION.HCC1395_tumor.L008,69,Cycle,Base Insertion,26049,0.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,69,Cycle,Base Deletion,26049,1.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,7,Cycle,Base Substitution,26817,25.94,31.00,31.20,-0.20,Before
REGRESSION.HCC1395_tumor.L008,7,Cycle,Base Insertion,26817,0.46,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,7,Cycle,Base Deletion,26817,0.88,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,70,Cycle,Base Substitution,26051,29.66,31.00,31.25,-0.25,Before
REGRESSION.HCC1395_tumor.L008,70,Cycle,Base Insertion,25965,0.59,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,70,Cycle,Base Deletion,25965,1.69,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,71,Cycle,Base Substitution,26120,27.82,30.00,30.67,-0.67,Before
REGRESSION.HCC1395_tumor.L008,71,Cycle,Base Insertion,26016,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,71,Cycle,Base Deletion,26016,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,72,Cycle,Base Substitution,26045,34.67,30.00,31.27,-1.27,Before
REGRESSION.HCC1395_tumor.L008,72,Cycle,Base Insertion,25941,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,72,Cycle,Base Deletion,25941,1.35,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,73,Cycle,Base Substitution,26071,45.12,30.00,31.04,-1.04,Before
REGRESSION.HCC1395_tumor.L008,73,Cycle,Base Insertion,25960,0.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,73,Cycle,Base Deletion,25960,1.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,74,Cycle,Base Substitution,25877,42.11,29.00,30.76,-1.76,Before
REGRESSION.HCC1395_tumor.L008,74,Cycle,Base Insertion,25762,0.87,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,74,Cycle,Base Deletion,25762,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,75,Cycle,Base Substitution,25940,41.89,30.00,31.29,-1.29,Before
REGRESSION.HCC1395_tumor.L008,75,Cycle,Base Insertion,25820,1.22,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,75,Cycle,Base Deletion,25820,1.16,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,76,Cycle,Base Substitution,25881,38.95,29.00,30.81,-1.81,Before
REGRESSION.HCC1395_tumor.L008,76,Cycle,Base Insertion,25743,1.26,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,76,Cycle,Base Deletion,25743,0.68,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,77,Cycle,Base Substitution,25885,46.11,29.00,30.98,-1.98,Before
REGRESSION.HCC1395_tumor.L008,77,Cycle,Base Insertion,25751,0.84,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,77,Cycle,Base Deletion,25751,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,78,Cycle,Base Substitution,25830,34.64,30.00,31.00,-1.00,Before
REGRESSION.HCC1395_tumor.L008,78,Cycle,Base Insertion,25691,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,78,Cycle,Base Deletion,25691,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,79,Cycle,Base Substitution,25754,41.02,30.00,31.06,-1.06,Before
REGRESSION.HCC1395_tumor.L008,79,Cycle,Base Insertion,25600,0.76,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,79,Cycle,Base Deletion,25600,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,8,Cycle,Base Substitution,26785,34.17,30.00,31.07,-1.07,Before
REGRESSION.HCC1395_tumor.L008,8,Cycle,Base Insertion,26785,0.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,8,Cycle,Base Deletion,26785,1.19,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,80,Cycle,Base Substitution,25683,40.51,29.00,30.55,-1.55,Before
REGRESSION.HCC1395_tumor.L008,80,Cycle,Base Insertion,25531,0.75,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,80,Cycle,Base Deletion,25531,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,81,Cycle,Base Substitution,25669,35.09,30.00,30.54,-0.54,Before
REGRESSION.HCC1395_tumor.L008,81,Cycle,Base Insertion,25481,0.62,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,81,Cycle,Base Deletion,25481,0.99,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,82,Cycle,Base Substitution,25657,44.97,29.00,30.61,-1.61,Before
REGRESSION.HCC1395_tumor.L008,82,Cycle,Base Insertion,25486,0.80,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,82,Cycle,Base Deletion,25486,1.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,83,Cycle,Base Substitution,25559,32.59,30.00,30.98,-0.98,Before
REGRESSION.HCC1395_tumor.L008,83,Cycle,Base Insertion,25399,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,83,Cycle,Base Deletion,25399,1.24,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,84,Cycle,Base Substitution,25494,40.99,29.00,30.87,-1.87,Before
REGRESSION.HCC1395_tumor.L008,84,Cycle,Base Insertion,25328,0.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,84,Cycle,Base Deletion,25328,1.58,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,85,Cycle,Base Substitution,25537,39.10,29.00,30.75,-1.75,Before
REGRESSION.HCC1395_tumor.L008,85,Cycle,Base Insertion,25379,0.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,85,Cycle,Base Deletion,25379,1.30,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,86,Cycle,Base Substitution,25423,42.29,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L008,86,Cycle,Base Insertion,25238,0.42,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,86,Cycle,Base Deletion,25238,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,87,Cycle,Base Substitution,25417,25.72,30.00,30.77,-0.77,Before
REGRESSION.HCC1395_tumor.L008,87,Cycle,Base Insertion,25242,0.78,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,87,Cycle,Base Deletion,25242,1.65,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,88,Cycle,Base Substitution,25291,45.66,29.00,30.40,-1.40,Before
REGRESSION.HCC1395_tumor.L008,88,Cycle,Base Insertion,25111,0.81,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,88,Cycle,Base Deletion,25111,1.93,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,89,Cycle,Base Substitution,25262,34.74,30.00,30.71,-0.71,Before
REGRESSION.HCC1395_tumor.L008,89,Cycle,Base Insertion,25089,1.04,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,89,Cycle,Base Deletion,25089,1.63,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,9,Cycle,Base Substitution,26840,33.47,30.00,31.24,-1.24,Before
REGRESSION.HCC1395_tumor.L008,9,Cycle,Base Insertion,26840,0.47,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,9,Cycle,Base Deletion,26840,1.60,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,90,Cycle,Base Substitution,25305,32.26,30.00,30.96,-0.96,Before
REGRESSION.HCC1395_tumor.L008,90,Cycle,Base Insertion,25118,0.29,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,90,Cycle,Base Deletion,25118,1.32,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,91,Cycle,Base Substitution,25385,43.72,29.00,30.63,-1.63,Before
REGRESSION.HCC1395_tumor.L008,91,Cycle,Base Insertion,25199,0.17,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,91,Cycle,Base Deletion,25199,1.38,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,92,Cycle,Base Substitution,25199,47.75,29.00,30.48,-1.48,Before
REGRESSION.HCC1395_tumor.L008,92,Cycle,Base Insertion,25012,0.14,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,92,Cycle,Base Deletion,25012,1.18,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,93,Cycle,Base Substitution,25193,35.49,30.00,30.78,-0.78,Before
REGRESSION.HCC1395_tumor.L008,93,Cycle,Base Insertion,24982,0.13,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,93,Cycle,Base Deletion,24982,1.28,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,94,Cycle,Base Substitution,25067,33.19,30.00,30.46,-0.46,Before
REGRESSION.HCC1395_tumor.L008,94,Cycle,Base Insertion,24845,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,94,Cycle,Base Deletion,24845,1.56,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,95,Cycle,Base Substitution,25144,27.48,30.00,30.45,-0.45,Before
REGRESSION.HCC1395_tumor.L008,95,Cycle,Base Insertion,24903,0.77,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,95,Cycle,Base Deletion,24903,1.53,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,96,Cycle,Base Substitution,25069,40.38,29.00,30.74,-1.74,Before
REGRESSION.HCC1395_tumor.L008,96,Cycle,Base Insertion,24832,0.55,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,96,Cycle,Base Deletion,24832,1.52,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,97,Cycle,Base Substitution,24930,39.84,29.00,30.72,-1.72,Before
REGRESSION.HCC1395_tumor.L008,97,Cycle,Base Insertion,24687,0.36,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,97,Cycle,Base Deletion,24687,1.05,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,98,Cycle,Base Substitution,24950,42.39,29.00,30.52,-1.52,Before
REGRESSION.HCC1395_tumor.L008,98,Cycle,Base Insertion,24721,0.41,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,98,Cycle,Base Deletion,24721,1.27,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,99,Cycle,Base Substitution,24713,35.96,29.00,30.82,-1.82,Before
REGRESSION.HCC1395_tumor.L008,99,Cycle,Base Insertion,24497,0.64,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,99,Cycle,Base Deletion,24497,1.43,45.00,45.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,12,QualityScore,Base Substitution,81206,7793.84,10.00,12.00,-2.00,Before
REGRESSION.HCC1395_tumor.L008,24,QualityScore,Base Substitution,195517,783.61,24.00,24.00,0.00,Before
REGRESSION.HCC1395_tumor.L008,40,QualityScore,Base Substitution,7269465,5346.35,31.00,40.00,-9.00,Before
REGRESSION.HCC1395_tumor.L008,45,QualityScore,Base Insertion,7546188,138.61,47.00,45.00,2.00,Before
REGRESSION.HCC1395_tumor.L008,45,QualityScore,Base Deletion,7546188,374.21,43.00,45.00,-2.00,Before
REGRESSION.HCC1395_tumor.L001,AA,Context,Base Substitution,838217,1860.20,27.00,25.56,1.44,After
REGRESSION.HCC1395_tumor.L001,AAA,Context,Base Insertion,297407,79.46,42.00,45.00,-3.00,After
REGRESSION.HCC1395_tumor.L001,AAA,Context,Base Deletion,297407,194.04,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L001,AAC,Context,Base Insertion,132989,5.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AAC,Context,Base Deletion,132989,9.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AAG,Context,Base Insertion,199491,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AAG,Context,Base Deletion,199491,10.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AAT,Context,Base Insertion,174217,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AAT,Context,Base Deletion,174217,13.99,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,AC,Context,Base Substitution,533796,1895.94,25.00,24.74,0.26,After
REGRESSION.HCC1395_tumor.L001,ACA,Context,Base Insertion,206308,21.28,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,ACA,Context,Base Deletion,206308,32.55,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,ACC,Context,Base Insertion,146935,7.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ACC,Context,Base Deletion,146935,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ACG,Context,Base Insertion,30708,0.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ACG,Context,Base Deletion,30708,2.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ACT,Context,Base Insertion,158447,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ACT,Context,Base Deletion,158447,10.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AG,Context,Base Substitution,803328,615.20,31.00,28.73,2.27,After
REGRESSION.HCC1395_tumor.L001,AGA,Context,Base Insertion,222590,6.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AGA,Context,Base Deletion,222590,10.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AGC,Context,Base Insertion,193550,0.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AGC,Context,Base Deletion,193550,5.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AGG,Context,Base Insertion,228096,9.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AGG,Context,Base Deletion,228096,6.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AGT,Context,Base Insertion,155664,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AGT,Context,Base Deletion,155664,7.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,AT,Context,Base Substitution,604222,618.22,30.00,27.65,2.35,After
REGRESSION.HCC1395_tumor.L001,ATA,Context,Base Insertion,135001,9.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ATA,Context,Base Deletion,135001,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ATC,Context,Base Insertion,121192,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ATC,Context,Base Deletion,121192,6.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ATG,Context,Base Insertion,175629,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ATG,Context,Base Deletion,175629,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ATT,Context,Base Insertion,183290,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,ATT,Context,Base Deletion,183290,8.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CA,Context,Base Substitution,861161,1755.72,27.00,26.50,0.50,After
REGRESSION.HCC1395_tumor.L001,CAA,Context,Base Insertion,172470,7.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CAA,Context,Base Deletion,172470,11.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CAC,Context,Base Insertion,184712,21.63,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,CAC,Context,Base Deletion,184712,31.28,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,CAG,Context,Base Insertion,293376,8.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CAG,Context,Base Deletion,293376,10.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CAT,Context,Base Insertion,171267,7.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CAT,Context,Base Deletion,171267,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CC,Context,Base Substitution,766432,2435.14,25.00,24.65,0.35,After
REGRESSION.HCC1395_tumor.L001,CCA,Context,Base Insertion,246410,6.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CCA,Context,Base Deletion,246410,6.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CCC,Context,Base Insertion,212774,11.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CCC,Context,Base Deletion,212774,15.63,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,CCG,Context,Base Insertion,53455,2.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CCG,Context,Base Deletion,53455,5.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CCT,Context,Base Insertion,243729,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CCT,Context,Base Deletion,243729,9.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CG,Context,Base Substitution,160000,558.98,25.00,24.97,0.03,After
REGRESSION.HCC1395_tumor.L001,CGA,Context,Base Insertion,56330,3.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CGA,Context,Base Deletion,56330,0.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CGC,Context,Base Insertion,80598,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CGC,Context,Base Deletion,80598,5.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CGG,Context,Base Insertion,97282,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CGG,Context,Base Deletion,97282,9.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CGT,Context,Base Insertion,63503,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CGT,Context,Base Deletion,63503,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CT,Context,Base Substitution,842674,410.63,33.00,29.39,3.61,After
REGRESSION.HCC1395_tumor.L001,CTA,Context,Base Insertion,96879,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CTA,Context,Base Deletion,96879,6.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CTC,Context,Base Insertion,201933,7.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CTC,Context,Base Deletion,201933,20.79,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,CTG,Context,Base Insertion,294390,3.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CTG,Context,Base Deletion,294390,10.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CTT,Context,Base Insertion,211352,5.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,CTT,Context,Base Deletion,211352,8.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GA,Context,Base Substitution,704832,1006.19,28.00,26.98,1.02,After
REGRESSION.HCC1395_tumor.L001,GAA,Context,Base Insertion,210985,4.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GAA,Context,Base Deletion,210985,8.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GAC,Context,Base Insertion,118606,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GAC,Context,Base Deletion,118606,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GAG,Context,Base Insertion,207073,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GAG,Context,Base Deletion,207073,10.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GAT,Context,Base Insertion,125233,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GAT,Context,Base Deletion,125233,1.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GC,Context,Base Substitution,665050,1440.18,27.00,26.08,0.92,After
REGRESSION.HCC1395_tumor.L001,GCA,Context,Base Insertion,205669,4.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GCA,Context,Base Deletion,205669,4.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GCC,Context,Base Insertion,199638,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GCC,Context,Base Deletion,199638,8.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GCG,Context,Base Insertion,48642,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GCG,Context,Base Deletion,48642,6.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GCT,Context,Base Insertion,210833,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GCT,Context,Base Deletion,210833,5.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GG,Context,Base Substitution,791836,736.10,30.00,27.75,2.25,After
REGRESSION.HCC1395_tumor.L001,GGA,Context,Base Insertion,215123,14.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GGA,Context,Base Deletion,215123,14.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GGC,Context,Base Insertion,196555,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GGC,Context,Base Deletion,196555,8.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GGG,Context,Base Insertion,218617,7.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GGG,Context,Base Deletion,218617,30.94,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,GGT,Context,Base Insertion,159064,3.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GGT,Context,Base Deletion,159064,4.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GT,Context,Base Substitution,595094,1024.37,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L001,GTA,Context,Base Insertion,102396,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GTA,Context,Base Deletion,102396,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GTC,Context,Base Insertion,128006,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GTC,Context,Base Deletion,128006,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GTG,Context,Base Insertion,201379,14.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GTG,Context,Base Deletion,201379,37.57,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L001,GTT,Context,Base Insertion,149938,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,GTT,Context,Base Deletion,149938,12.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TA,Context,Base Substitution,485975,1148.45,26.00,25.09,0.91,After
REGRESSION.HCC1395_tumor.L001,TAA,Context,Base Insertion,150097,10.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TAA,Context,Base Deletion,150097,13.89,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,TAC,Context,Base Insertion,94065,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TAC,Context,Base Deletion,94065,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TAG,Context,Base Insertion,97005,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TAG,Context,Base Deletion,97005,0.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TAT,Context,Base Insertion,129179,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TAT,Context,Base Deletion,129179,4.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TC,Context,Base Substitution,650031,1667.30,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L001,TCA,Context,Base Insertion,196038,5.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TCA,Context,Base Deletion,196038,12.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TCC,Context,Base Insertion,202198,30.51,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,TCC,Context,Base Deletion,202198,8.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TCG,Context,Base Insertion,26018,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TCG,Context,Base Deletion,26018,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TCT,Context,Base Insertion,224000,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TCT,Context,Base Deletion,224000,13.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TG,Context,Base Substitution,849286,384.99,33.00,29.43,3.57,After
REGRESSION.HCC1395_tumor.L001,TGA,Context,Base Insertion,205333,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TGA,Context,Base Deletion,205333,3.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TGC,Context,Base Insertion,190109,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TGC,Context,Base Deletion,190109,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TGG,Context,Base Insertion,242007,4.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TGG,Context,Base Deletion,242007,12.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TGT,Context,Base Insertion,213095,14.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TGT,Context,Base Deletion,213095,38.43,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L001,TT,Context,Base Substitution,845408,944.33,29.00,28.24,0.76,After
REGRESSION.HCC1395_tumor.L001,TTA,Context,Base Insertion,148029,4.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TTA,Context,Base Deletion,148029,10.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TTC,Context,Base Insertion,195049,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TTC,Context,Base Deletion,195049,10.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TTG,Context,Base Insertion,171805,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TTG,Context,Base Deletion,171805,8.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,TTT,Context,Base Insertion,295213,58.34,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L001,TTT,Context,Base Deletion,295213,160.68,38.00,45.00,-7.00,After
REGRESSION.HCC1395_tumor.L001,-1,Cycle,Base Substitution,38749,163.62,24.00,23.57,0.43,After
REGRESSION.HCC1395_tumor.L001,-10,Cycle,Base Substitution,39073,57.68,28.00,27.99,0.01,After
REGRESSION.HCC1395_tumor.L001,-10,Cycle,Base Insertion,39073,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-10,Cycle,Base Deletion,39073,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-100,Cycle,Base Substitution,36684,81.26,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L001,-100,Cycle,Base Insertion,36393,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-100,Cycle,Base Deletion,36393,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-101,Cycle,Base Substitution,36589,93.30,26.00,26.63,-0.63,After
REGRESSION.HCC1395_tumor.L001,-101,Cycle,Base Insertion,36285,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-101,Cycle,Base Deletion,36285,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-102,Cycle,Base Substitution,36560,93.25,26.00,26.62,-0.62,After
REGRESSION.HCC1395_tumor.L001,-102,Cycle,Base Insertion,36236,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-102,Cycle,Base Deletion,36236,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-103,Cycle,Base Substitution,36325,89.91,26.00,26.49,-0.49,After
REGRESSION.HCC1395_tumor.L001,-103,Cycle,Base Insertion,36000,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-103,Cycle,Base Deletion,36000,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-104,Cycle,Base Substitution,36258,76.54,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L001,-104,Cycle,Base Insertion,35923,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-104,Cycle,Base Deletion,35923,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-105,Cycle,Base Substitution,36169,76.84,27.00,26.20,0.80,After
REGRESSION.HCC1395_tumor.L001,-105,Cycle,Base Insertion,35825,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-105,Cycle,Base Deletion,35825,2.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-106,Cycle,Base Substitution,36201,81.91,26.00,26.46,-0.46,After
REGRESSION.HCC1395_tumor.L001,-106,Cycle,Base Insertion,35874,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-106,Cycle,Base Deletion,35874,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-107,Cycle,Base Substitution,36008,66.78,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L001,-107,Cycle,Base Insertion,35688,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-107,Cycle,Base Deletion,35688,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-108,Cycle,Base Substitution,36021,84.33,26.00,26.59,-0.59,After
REGRESSION.HCC1395_tumor.L001,-108,Cycle,Base Insertion,35690,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-108,Cycle,Base Deletion,35690,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-109,Cycle,Base Substitution,35897,86.16,26.00,26.59,-0.59,After
REGRESSION.HCC1395_tumor.L001,-109,Cycle,Base Insertion,35578,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-109,Cycle,Base Deletion,35578,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-11,Cycle,Base Substitution,39057,62.51,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L001,-11,Cycle,Base Insertion,39057,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-11,Cycle,Base Deletion,39057,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-110,Cycle,Base Substitution,35886,79.86,26.00,26.38,-0.38,After
REGRESSION.HCC1395_tumor.L001,-110,Cycle,Base Insertion,35542,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-110,Cycle,Base Deletion,35542,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-111,Cycle,Base Substitution,35706,81.13,26.00,26.39,-0.39,After
REGRESSION.HCC1395_tumor.L001,-111,Cycle,Base Insertion,35338,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-111,Cycle,Base Deletion,35338,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-112,Cycle,Base Substitution,35678,65.29,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L001,-112,Cycle,Base Insertion,35299,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-112,Cycle,Base Deletion,35299,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-113,Cycle,Base Substitution,35586,77.34,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L001,-113,Cycle,Base Insertion,35228,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-113,Cycle,Base Deletion,35228,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-114,Cycle,Base Substitution,35470,87.55,26.00,26.35,-0.35,After
REGRESSION.HCC1395_tumor.L001,-114,Cycle,Base Insertion,35124,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-114,Cycle,Base Deletion,35124,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-115,Cycle,Base Substitution,35426,88.34,26.00,26.40,-0.40,After
REGRESSION.HCC1395_tumor.L001,-115,Cycle,Base Insertion,35075,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-115,Cycle,Base Deletion,35075,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-116,Cycle,Base Substitution,35250,80.93,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L001,-116,Cycle,Base Insertion,34895,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-116,Cycle,Base Deletion,34895,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-117,Cycle,Base Substitution,35154,83.70,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L001,-117,Cycle,Base Insertion,34780,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-117,Cycle,Base Deletion,34780,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-118,Cycle,Base Substitution,35159,69.50,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L001,-118,Cycle,Base Insertion,34753,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-118,Cycle,Base Deletion,34753,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-119,Cycle,Base Substitution,35050,74.36,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L001,-119,Cycle,Base Insertion,34658,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-119,Cycle,Base Deletion,34658,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-12,Cycle,Base Substitution,39049,37.37,29.00,27.89,1.11,After
REGRESSION.HCC1395_tumor.L001,-12,Cycle,Base Insertion,39049,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-12,Cycle,Base Deletion,39049,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-120,Cycle,Base Substitution,34908,93.58,26.00,26.38,-0.38,After
REGRESSION.HCC1395_tumor.L001,-120,Cycle,Base Insertion,34553,0.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-120,Cycle,Base Deletion,34553,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-121,Cycle,Base Substitution,34881,84.66,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L001,-121,Cycle,Base Insertion,34512,0.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-121,Cycle,Base Deletion,34512,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-122,Cycle,Base Substitution,34655,76.91,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L001,-122,Cycle,Base Insertion,34300,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-122,Cycle,Base Deletion,34300,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-123,Cycle,Base Substitution,34664,90.86,26.00,25.62,0.38,After
REGRESSION.HCC1395_tumor.L001,-123,Cycle,Base Insertion,34285,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-123,Cycle,Base Deletion,34285,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-124,Cycle,Base Substitution,34544,79.48,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L001,-124,Cycle,Base Insertion,34133,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-124,Cycle,Base Deletion,34133,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-125,Cycle,Base Substitution,34482,80.73,26.00,26.25,-0.25,After
REGRESSION.HCC1395_tumor.L001,-125,Cycle,Base Insertion,34092,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-125,Cycle,Base Deletion,34092,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-126,Cycle,Base Substitution,34427,79.30,26.00,26.33,-0.33,After
REGRESSION.HCC1395_tumor.L001,-126,Cycle,Base Insertion,34030,2.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-126,Cycle,Base Deletion,34030,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-127,Cycle,Base Substitution,34395,87.25,26.00,25.78,0.22,After
REGRESSION.HCC1395_tumor.L001,-127,Cycle,Base Insertion,34008,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-127,Cycle,Base Deletion,34008,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-128,Cycle,Base Substitution,34178,78.02,26.00,26.52,-0.52,After
REGRESSION.HCC1395_tumor.L001,-128,Cycle,Base Insertion,33784,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-128,Cycle,Base Deletion,33784,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-129,Cycle,Base Substitution,34070,93.89,26.00,25.66,0.34,After
REGRESSION.HCC1395_tumor.L001,-129,Cycle,Base Insertion,33691,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-129,Cycle,Base Deletion,33691,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-13,Cycle,Base Substitution,39050,50.68,28.00,27.77,0.23,After
REGRESSION.HCC1395_tumor.L001,-13,Cycle,Base Insertion,39050,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-13,Cycle,Base Deletion,39050,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-130,Cycle,Base Substitution,34014,69.69,27.00,26.27,0.73,After
REGRESSION.HCC1395_tumor.L001,-130,Cycle,Base Insertion,33615,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-130,Cycle,Base Deletion,33615,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-131,Cycle,Base Substitution,33869,90.15,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L001,-131,Cycle,Base Insertion,33468,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-131,Cycle,Base Deletion,33468,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-132,Cycle,Base Substitution,33820,79.94,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L001,-132,Cycle,Base Insertion,33405,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-132,Cycle,Base Deletion,33405,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-133,Cycle,Base Substitution,33690,73.00,27.00,26.31,0.69,After
REGRESSION.HCC1395_tumor.L001,-133,Cycle,Base Insertion,33274,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-133,Cycle,Base Deletion,33274,2.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-134,Cycle,Base Substitution,33564,66.53,27.00,26.31,0.69,After
REGRESSION.HCC1395_tumor.L001,-134,Cycle,Base Insertion,33151,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-134,Cycle,Base Deletion,33151,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-135,Cycle,Base Substitution,33507,77.35,26.00,26.19,-0.19,After
REGRESSION.HCC1395_tumor.L001,-135,Cycle,Base Insertion,33079,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-135,Cycle,Base Deletion,33079,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-136,Cycle,Base Substitution,33293,80.27,26.00,26.22,-0.22,After
REGRESSION.HCC1395_tumor.L001,-136,Cycle,Base Insertion,32845,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-136,Cycle,Base Deletion,32845,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-137,Cycle,Base Substitution,33158,72.09,27.00,26.06,0.94,After
REGRESSION.HCC1395_tumor.L001,-137,Cycle,Base Insertion,32703,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-137,Cycle,Base Deletion,32703,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-138,Cycle,Base Substitution,33106,69.06,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L001,-138,Cycle,Base Insertion,32604,0.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-138,Cycle,Base Deletion,32604,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-139,Cycle,Base Substitution,33050,72.71,27.00,26.07,0.93,After
REGRESSION.HCC1395_tumor.L001,-139,Cycle,Base Insertion,32550,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-139,Cycle,Base Deletion,32550,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-14,Cycle,Base Substitution,39063,61.84,28.00,27.68,0.32,After
REGRESSION.HCC1395_tumor.L001,-14,Cycle,Base Insertion,39063,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-14,Cycle,Base Deletion,39063,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-140,Cycle,Base Substitution,32984,71.67,27.00,26.13,0.87,After
REGRESSION.HCC1395_tumor.L001,-140,Cycle,Base Insertion,32444,0.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-140,Cycle,Base Deletion,32444,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-141,Cycle,Base Substitution,32837,57.28,27.00,26.19,0.81,After
REGRESSION.HCC1395_tumor.L001,-141,Cycle,Base Insertion,32276,0.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-141,Cycle,Base Deletion,32276,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-142,Cycle,Base Substitution,32742,58.33,27.00,26.24,0.76,After
REGRESSION.HCC1395_tumor.L001,-142,Cycle,Base Insertion,32130,0.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-142,Cycle,Base Deletion,32130,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-143,Cycle,Base Substitution,32480,55.96,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L001,-143,Cycle,Base Insertion,31840,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-143,Cycle,Base Deletion,31840,0.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-144,Cycle,Base Substitution,32381,52.91,27.00,26.26,0.74,After
REGRESSION.HCC1395_tumor.L001,-144,Cycle,Base Insertion,31692,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-144,Cycle,Base Deletion,31692,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-145,Cycle,Base Substitution,32248,42.56,28.00,26.52,1.48,After
REGRESSION.HCC1395_tumor.L001,-145,Cycle,Base Insertion,24918,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-145,Cycle,Base Deletion,24918,0.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-146,Cycle,Base Substitution,32051,22.35,28.00,26.20,1.80,After
REGRESSION.HCC1395_tumor.L001,-146,Cycle,Base Insertion,24801,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-146,Cycle,Base Deletion,24801,0.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-147,Cycle,Base Substitution,31914,16.12,27.00,23.13,3.87,After
REGRESSION.HCC1395_tumor.L001,-148,Cycle,Base Substitution,31627,17.87,24.00,16.09,7.91,After
REGRESSION.HCC1395_tumor.L001,-149,Cycle,Base Substitution,19779,22.99,22.00,14.17,7.83,After
REGRESSION.HCC1395_tumor.L001,-15,Cycle,Base Substitution,38947,46.73,28.00,27.81,0.19,After
REGRESSION.HCC1395_tumor.L001,-15,Cycle,Base Insertion,38947,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-15,Cycle,Base Deletion,38947,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-150,Cycle,Base Substitution,6937,14.34,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L001,-16,Cycle,Base Substitution,38990,63.07,28.00,27.76,0.24,After
REGRESSION.HCC1395_tumor.L001,-16,Cycle,Base Insertion,38990,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-16,Cycle,Base Deletion,38990,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-17,Cycle,Base Substitution,39020,60.51,28.00,27.77,0.23,After
REGRESSION.HCC1395_tumor.L001,-17,Cycle,Base Insertion,39019,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-17,Cycle,Base Deletion,39019,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-18,Cycle,Base Substitution,39095,48.95,28.00,27.88,0.12,After
REGRESSION.HCC1395_tumor.L001,-18,Cycle,Base Insertion,39094,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-18,Cycle,Base Deletion,39094,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-19,Cycle,Base Substitution,38847,61.80,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L001,-19,Cycle,Base Insertion,38846,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-19,Cycle,Base Deletion,38846,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-2,Cycle,Base Substitution,39163,129.18,25.00,25.67,-0.67,After
REGRESSION.HCC1395_tumor.L001,-20,Cycle,Base Substitution,39000,46.17,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L001,-20,Cycle,Base Insertion,38999,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-20,Cycle,Base Deletion,38999,4.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-21,Cycle,Base Substitution,38882,56.43,28.00,27.89,0.11,After
REGRESSION.HCC1395_tumor.L001,-21,Cycle,Base Insertion,38882,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-21,Cycle,Base Deletion,38882,3.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-22,Cycle,Base Substitution,38922,56.46,28.00,27.85,0.15,After
REGRESSION.HCC1395_tumor.L001,-22,Cycle,Base Insertion,38921,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-22,Cycle,Base Deletion,38921,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-23,Cycle,Base Substitution,38935,51.67,28.00,27.79,0.21,After
REGRESSION.HCC1395_tumor.L001,-23,Cycle,Base Insertion,38934,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-23,Cycle,Base Deletion,38934,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-24,Cycle,Base Substitution,38931,51.98,28.00,27.82,0.18,After
REGRESSION.HCC1395_tumor.L001,-24,Cycle,Base Insertion,38930,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-24,Cycle,Base Deletion,38930,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-25,Cycle,Base Substitution,38900,58.68,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L001,-25,Cycle,Base Insertion,38899,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-25,Cycle,Base Deletion,38899,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-26,Cycle,Base Substitution,38753,50.85,28.00,26.91,1.09,After
REGRESSION.HCC1395_tumor.L001,-26,Cycle,Base Insertion,38753,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-26,Cycle,Base Deletion,38753,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-27,Cycle,Base Substitution,38894,42.28,29.00,27.20,1.80,After
REGRESSION.HCC1395_tumor.L001,-27,Cycle,Base Insertion,38893,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-27,Cycle,Base Deletion,38893,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-28,Cycle,Base Substitution,38939,69.23,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L001,-28,Cycle,Base Insertion,38935,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-28,Cycle,Base Deletion,38935,4.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-29,Cycle,Base Substitution,38858,39.48,29.00,27.32,1.68,After
REGRESSION.HCC1395_tumor.L001,-29,Cycle,Base Insertion,38853,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-29,Cycle,Base Deletion,38853,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-3,Cycle,Base Substitution,39269,127.62,25.00,26.65,-1.65,After
REGRESSION.HCC1395_tumor.L001,-30,Cycle,Base Substitution,38846,66.87,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L001,-30,Cycle,Base Insertion,38838,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-30,Cycle,Base Deletion,38838,4.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-31,Cycle,Base Substitution,38863,57.81,28.00,27.19,0.81,After
REGRESSION.HCC1395_tumor.L001,-31,Cycle,Base Insertion,38856,2.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-31,Cycle,Base Deletion,38856,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-32,Cycle,Base Substitution,38779,54.90,28.00,26.83,1.17,After
REGRESSION.HCC1395_tumor.L001,-32,Cycle,Base Insertion,38773,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-32,Cycle,Base Deletion,38773,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-33,Cycle,Base Substitution,38789,40.30,29.00,27.37,1.63,After
REGRESSION.HCC1395_tumor.L001,-33,Cycle,Base Insertion,38785,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-33,Cycle,Base Deletion,38785,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-34,Cycle,Base Substitution,38752,49.38,28.00,26.90,1.10,After
REGRESSION.HCC1395_tumor.L001,-34,Cycle,Base Insertion,38745,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-34,Cycle,Base Deletion,38745,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-35,Cycle,Base Substitution,38691,44.67,28.00,27.00,1.00,After
REGRESSION.HCC1395_tumor.L001,-35,Cycle,Base Insertion,38683,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-35,Cycle,Base Deletion,38683,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-36,Cycle,Base Substitution,38804,55.24,28.00,27.19,0.81,After
REGRESSION.HCC1395_tumor.L001,-36,Cycle,Base Insertion,38800,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-36,Cycle,Base Deletion,38800,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-37,Cycle,Base Substitution,38769,50.91,28.00,27.06,0.94,After
REGRESSION.HCC1395_tumor.L001,-37,Cycle,Base Insertion,38765,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-37,Cycle,Base Deletion,38765,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-38,Cycle,Base Substitution,38657,71.82,27.00,27.01,-0.01,After
REGRESSION.HCC1395_tumor.L001,-38,Cycle,Base Insertion,38650,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-38,Cycle,Base Deletion,38650,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-39,Cycle,Base Substitution,38641,47.76,28.00,27.00,1.00,After
REGRESSION.HCC1395_tumor.L001,-39,Cycle,Base Insertion,38636,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-39,Cycle,Base Deletion,38636,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-4,Cycle,Base Substitution,39123,69.65,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L001,-40,Cycle,Base Substitution,38641,54.86,28.00,27.11,0.89,After
REGRESSION.HCC1395_tumor.L001,-40,Cycle,Base Insertion,38636,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-40,Cycle,Base Deletion,38636,4.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-41,Cycle,Base Substitution,38627,47.15,28.00,27.21,0.79,After
REGRESSION.HCC1395_tumor.L001,-41,Cycle,Base Insertion,38620,2.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-41,Cycle,Base Deletion,38620,5.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-42,Cycle,Base Substitution,38698,59.35,28.00,27.28,0.72,After
REGRESSION.HCC1395_tumor.L001,-42,Cycle,Base Insertion,38692,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-42,Cycle,Base Deletion,38692,5.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-43,Cycle,Base Substitution,38700,54.27,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L001,-43,Cycle,Base Insertion,38692,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-43,Cycle,Base Deletion,38692,5.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-44,Cycle,Base Substitution,38724,60.97,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L001,-44,Cycle,Base Insertion,38714,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-44,Cycle,Base Deletion,38714,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-45,Cycle,Base Substitution,38666,61.82,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L001,-45,Cycle,Base Insertion,38653,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-45,Cycle,Base Deletion,38653,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-46,Cycle,Base Substitution,38672,50.84,28.00,26.94,1.06,After
REGRESSION.HCC1395_tumor.L001,-46,Cycle,Base Insertion,38661,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-46,Cycle,Base Deletion,38661,4.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-47,Cycle,Base Substitution,38602,67.11,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L001,-47,Cycle,Base Insertion,38594,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-47,Cycle,Base Deletion,38594,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-48,Cycle,Base Substitution,38563,56.69,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L001,-48,Cycle,Base Insertion,38550,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-48,Cycle,Base Deletion,38550,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-49,Cycle,Base Substitution,38591,58.32,28.00,26.79,1.21,After
REGRESSION.HCC1395_tumor.L001,-49,Cycle,Base Insertion,38574,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-49,Cycle,Base Deletion,38574,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-5,Cycle,Base Substitution,39141,45.62,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L001,-5,Cycle,Base Insertion,39141,0.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-5,Cycle,Base Deletion,39141,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-50,Cycle,Base Substitution,38659,56.66,28.00,26.91,1.09,After
REGRESSION.HCC1395_tumor.L001,-50,Cycle,Base Insertion,38635,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-50,Cycle,Base Deletion,38635,4.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-51,Cycle,Base Substitution,38697,68.71,27.00,27.14,-0.14,After
REGRESSION.HCC1395_tumor.L001,-51,Cycle,Base Insertion,38672,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-51,Cycle,Base Deletion,38672,4.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-52,Cycle,Base Substitution,38572,68.13,27.00,27.02,-0.02,After
REGRESSION.HCC1395_tumor.L001,-52,Cycle,Base Insertion,38548,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-52,Cycle,Base Deletion,38548,5.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-53,Cycle,Base Substitution,38585,60.98,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L001,-53,Cycle,Base Insertion,38564,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-53,Cycle,Base Deletion,38564,4.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-54,Cycle,Base Substitution,38558,67.38,28.00,27.08,0.92,After
REGRESSION.HCC1395_tumor.L001,-54,Cycle,Base Insertion,38532,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-54,Cycle,Base Deletion,38532,4.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-55,Cycle,Base Substitution,38687,75.54,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L001,-55,Cycle,Base Insertion,38657,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-55,Cycle,Base Deletion,38657,4.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-56,Cycle,Base Substitution,38411,69.64,27.00,27.02,-0.02,After
REGRESSION.HCC1395_tumor.L001,-56,Cycle,Base Insertion,38371,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-56,Cycle,Base Deletion,38371,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-57,Cycle,Base Substitution,38559,59.34,28.00,27.05,0.95,After
REGRESSION.HCC1395_tumor.L001,-57,Cycle,Base Insertion,38501,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-57,Cycle,Base Deletion,38501,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-58,Cycle,Base Substitution,38605,53.38,28.00,27.44,0.56,After
REGRESSION.HCC1395_tumor.L001,-58,Cycle,Base Insertion,38550,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-58,Cycle,Base Deletion,38550,3.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-59,Cycle,Base Substitution,38487,61.52,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L001,-59,Cycle,Base Insertion,38415,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-59,Cycle,Base Deletion,38415,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-6,Cycle,Base Substitution,38921,61.79,28.00,27.31,0.69,After
REGRESSION.HCC1395_tumor.L001,-6,Cycle,Base Insertion,38921,0.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-6,Cycle,Base Deletion,38921,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-60,Cycle,Base Substitution,38471,76.34,27.00,27.03,-0.03,After
REGRESSION.HCC1395_tumor.L001,-60,Cycle,Base Insertion,38403,2.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-60,Cycle,Base Deletion,38403,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-61,Cycle,Base Substitution,38320,72.13,27.00,27.01,-0.01,After
REGRESSION.HCC1395_tumor.L001,-61,Cycle,Base Insertion,38248,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-61,Cycle,Base Deletion,38248,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-62,Cycle,Base Substitution,38514,59.13,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L001,-62,Cycle,Base Insertion,38435,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-62,Cycle,Base Deletion,38435,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-63,Cycle,Base Substitution,38318,52.04,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L001,-63,Cycle,Base Insertion,38247,2.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-63,Cycle,Base Deletion,38247,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-64,Cycle,Base Substitution,38254,51.47,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L001,-64,Cycle,Base Insertion,38174,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-64,Cycle,Base Deletion,38174,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-65,Cycle,Base Substitution,38258,74.69,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L001,-65,Cycle,Base Insertion,38171,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-65,Cycle,Base Deletion,38171,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-66,Cycle,Base Substitution,38294,65.62,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L001,-66,Cycle,Base Insertion,38194,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-66,Cycle,Base Deletion,38194,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-67,Cycle,Base Substitution,38242,51.85,28.00,26.89,1.11,After
REGRESSION.HCC1395_tumor.L001,-67,Cycle,Base Insertion,38138,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-67,Cycle,Base Deletion,38138,3.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-68,Cycle,Base Substitution,38200,62.20,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L001,-68,Cycle,Base Insertion,38091,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-68,Cycle,Base Deletion,38091,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-69,Cycle,Base Substitution,38232,68.04,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L001,-69,Cycle,Base Insertion,38118,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-69,Cycle,Base Deletion,38118,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-7,Cycle,Base Substitution,39053,74.40,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L001,-7,Cycle,Base Insertion,39053,0.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-7,Cycle,Base Deletion,39053,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-70,Cycle,Base Substitution,38125,55.96,28.00,27.23,0.77,After
REGRESSION.HCC1395_tumor.L001,-70,Cycle,Base Insertion,38017,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-70,Cycle,Base Deletion,38017,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-71,Cycle,Base Substitution,38110,59.96,28.00,27.07,0.93,After
REGRESSION.HCC1395_tumor.L001,-71,Cycle,Base Insertion,37986,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-71,Cycle,Base Deletion,37986,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-72,Cycle,Base Substitution,38094,63.60,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L001,-72,Cycle,Base Insertion,37967,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-72,Cycle,Base Deletion,37967,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-73,Cycle,Base Substitution,38042,70.31,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L001,-73,Cycle,Base Insertion,37909,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-73,Cycle,Base Deletion,37909,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-74,Cycle,Base Substitution,38018,72.49,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L001,-74,Cycle,Base Insertion,37874,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-74,Cycle,Base Deletion,37874,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-75,Cycle,Base Substitution,38038,76.83,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L001,-75,Cycle,Base Insertion,37889,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-75,Cycle,Base Deletion,37889,4.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-76,Cycle,Base Substitution,37872,80.84,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L001,-76,Cycle,Base Insertion,37723,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-76,Cycle,Base Deletion,37723,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-77,Cycle,Base Substitution,37921,67.44,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L001,-77,Cycle,Base Insertion,37771,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-77,Cycle,Base Deletion,37771,4.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-78,Cycle,Base Substitution,37788,64.47,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L001,-78,Cycle,Base Insertion,37620,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-78,Cycle,Base Deletion,37620,5.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-79,Cycle,Base Substitution,37857,66.53,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L001,-79,Cycle,Base Insertion,37667,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-79,Cycle,Base Deletion,37667,5.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-8,Cycle,Base Substitution,39034,74.60,27.00,27.16,-0.16,After
REGRESSION.HCC1395_tumor.L001,-8,Cycle,Base Insertion,39034,0.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-8,Cycle,Base Deletion,39034,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-80,Cycle,Base Substitution,37729,76.71,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L001,-80,Cycle,Base Insertion,37555,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-80,Cycle,Base Deletion,37555,5.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-81,Cycle,Base Substitution,37719,69.37,27.00,26.96,0.04,After
REGRESSION.HCC1395_tumor.L001,-81,Cycle,Base Insertion,37525,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-81,Cycle,Base Deletion,37525,4.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-82,Cycle,Base Substitution,37722,77.85,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L001,-82,Cycle,Base Insertion,37524,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-82,Cycle,Base Deletion,37524,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-83,Cycle,Base Substitution,37491,74.18,27.00,27.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-83,Cycle,Base Insertion,37296,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-83,Cycle,Base Deletion,37296,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-84,Cycle,Base Substitution,37595,83.17,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L001,-84,Cycle,Base Insertion,37404,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-84,Cycle,Base Deletion,37404,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-85,Cycle,Base Substitution,37500,61.69,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L001,-85,Cycle,Base Insertion,37279,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-85,Cycle,Base Deletion,37279,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-86,Cycle,Base Substitution,37450,78.66,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L001,-86,Cycle,Base Insertion,37246,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-86,Cycle,Base Deletion,37246,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-87,Cycle,Base Substitution,37374,83.12,26.00,26.60,-0.60,After
REGRESSION.HCC1395_tumor.L001,-87,Cycle,Base Insertion,37139,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-87,Cycle,Base Deletion,37139,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-88,Cycle,Base Substitution,37300,73.80,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L001,-88,Cycle,Base Insertion,37084,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-88,Cycle,Base Deletion,37084,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-89,Cycle,Base Substitution,37375,80.72,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L001,-89,Cycle,Base Insertion,37155,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-89,Cycle,Base Deletion,37155,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-9,Cycle,Base Substitution,39231,53.17,28.00,27.28,0.72,After
REGRESSION.HCC1395_tumor.L001,-9,Cycle,Base Insertion,39231,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-9,Cycle,Base Deletion,39231,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-90,Cycle,Base Substitution,37289,80.55,27.00,26.50,0.50,After
REGRESSION.HCC1395_tumor.L001,-90,Cycle,Base Insertion,37046,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-90,Cycle,Base Deletion,37046,2.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-91,Cycle,Base Substitution,37187,71.08,27.00,26.39,0.61,After
REGRESSION.HCC1395_tumor.L001,-91,Cycle,Base Insertion,36953,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-91,Cycle,Base Deletion,36953,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-92,Cycle,Base Substitution,37155,63.59,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L001,-92,Cycle,Base Insertion,36887,0.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-92,Cycle,Base Deletion,36887,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-93,Cycle,Base Substitution,37001,81.23,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L001,-93,Cycle,Base Insertion,36733,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-93,Cycle,Base Deletion,36733,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-94,Cycle,Base Substitution,37170,73.24,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L001,-94,Cycle,Base Insertion,36894,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-94,Cycle,Base Deletion,36894,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-95,Cycle,Base Substitution,36944,80.69,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L001,-95,Cycle,Base Insertion,36637,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-95,Cycle,Base Deletion,36637,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-96,Cycle,Base Substitution,36974,81.91,26.00,26.60,-0.60,After
REGRESSION.HCC1395_tumor.L001,-96,Cycle,Base Insertion,36660,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-96,Cycle,Base Deletion,36660,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-97,Cycle,Base Substitution,36841,72.89,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L001,-97,Cycle,Base Insertion,36554,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-97,Cycle,Base Deletion,36554,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-98,Cycle,Base Substitution,36740,84.85,26.00,26.07,-0.07,After
REGRESSION.HCC1395_tumor.L001,-98,Cycle,Base Insertion,36461,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-98,Cycle,Base Deletion,36461,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-99,Cycle,Base Substitution,36696,86.82,26.00,26.69,-0.69,After
REGRESSION.HCC1395_tumor.L001,-99,Cycle,Base Insertion,36417,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,-99,Cycle,Base Deletion,36417,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,1,Cycle,Base Substitution,38790,83.46,26.00,26.00,0.00,After
REGRESSION.HCC1395_tumor.L001,10,Cycle,Base Substitution,39104,48.54,28.00,27.68,0.32,After
REGRESSION.HCC1395_tumor.L001,10,Cycle,Base Insertion,39104,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,10,Cycle,Base Deletion,39104,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,100,Cycle,Base Substitution,36770,68.68,27.00,27.09,-0.09,After
REGRESSION.HCC1395_tumor.L001,100,Cycle,Base Insertion,36470,0.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,100,Cycle,Base Deletion,36470,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,101,Cycle,Base Substitution,36623,44.17,28.00,26.84,1.16,After
REGRESSION.HCC1395_tumor.L001,101,Cycle,Base Insertion,36296,0.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,101,Cycle,Base Deletion,36296,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,102,Cycle,Base Substitution,36451,81.19,26.00,26.88,-0.88,After
REGRESSION.HCC1395_tumor.L001,102,Cycle,Base Insertion,36127,0.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,102,Cycle,Base Deletion,36127,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,103,Cycle,Base Substitution,36353,50.93,28.00,26.91,1.09,After
REGRESSION.HCC1395_tumor.L001,103,Cycle,Base Insertion,36019,0.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,103,Cycle,Base Deletion,36019,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,104,Cycle,Base Substitution,36375,61.29,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L001,104,Cycle,Base Insertion,36056,0.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,104,Cycle,Base Deletion,36056,3.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,105,Cycle,Base Substitution,36217,59.02,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L001,105,Cycle,Base Insertion,35882,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,105,Cycle,Base Deletion,35882,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,106,Cycle,Base Substitution,36074,69.80,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L001,106,Cycle,Base Insertion,35745,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,106,Cycle,Base Deletion,35745,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,107,Cycle,Base Substitution,36189,66.17,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L001,107,Cycle,Base Insertion,35874,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,107,Cycle,Base Deletion,35874,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,108,Cycle,Base Substitution,36025,86.90,26.00,26.68,-0.68,After
REGRESSION.HCC1395_tumor.L001,108,Cycle,Base Insertion,35689,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,108,Cycle,Base Deletion,35689,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,109,Cycle,Base Substitution,35874,68.08,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L001,109,Cycle,Base Insertion,35545,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,109,Cycle,Base Deletion,35545,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,11,Cycle,Base Substitution,39034,43.11,29.00,27.51,1.49,After
REGRESSION.HCC1395_tumor.L001,11,Cycle,Base Insertion,39034,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,11,Cycle,Base Deletion,39034,2.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,110,Cycle,Base Substitution,35797,57.90,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L001,110,Cycle,Base Insertion,35445,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,110,Cycle,Base Deletion,35445,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,111,Cycle,Base Substitution,35722,69.04,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L001,111,Cycle,Base Insertion,35362,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,111,Cycle,Base Deletion,35362,2.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,112,Cycle,Base Substitution,35744,75.74,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L001,112,Cycle,Base Insertion,35392,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,112,Cycle,Base Deletion,35392,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,113,Cycle,Base Substitution,35710,78.66,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L001,113,Cycle,Base Insertion,35345,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,113,Cycle,Base Deletion,35345,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,114,Cycle,Base Substitution,35396,70.96,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L001,114,Cycle,Base Insertion,35067,1.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,114,Cycle,Base Deletion,35067,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,115,Cycle,Base Substitution,35492,72.20,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L001,115,Cycle,Base Insertion,35149,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,115,Cycle,Base Deletion,35149,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,116,Cycle,Base Substitution,35308,59.98,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L001,116,Cycle,Base Insertion,34945,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,116,Cycle,Base Deletion,34945,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,117,Cycle,Base Substitution,35188,78.72,26.00,26.77,-0.77,After
REGRESSION.HCC1395_tumor.L001,117,Cycle,Base Insertion,34823,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,117,Cycle,Base Deletion,34823,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,118,Cycle,Base Substitution,35134,68.81,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L001,118,Cycle,Base Insertion,34758,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,118,Cycle,Base Deletion,34758,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,119,Cycle,Base Substitution,35064,70.43,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L001,119,Cycle,Base Insertion,34690,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,119,Cycle,Base Deletion,34690,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,12,Cycle,Base Substitution,39124,39.21,29.00,27.60,1.40,After
REGRESSION.HCC1395_tumor.L001,12,Cycle,Base Insertion,39124,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,12,Cycle,Base Deletion,39124,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,120,Cycle,Base Substitution,35031,82.47,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L001,120,Cycle,Base Insertion,34670,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,120,Cycle,Base Deletion,34670,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,121,Cycle,Base Substitution,34886,67.90,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L001,121,Cycle,Base Insertion,34546,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,121,Cycle,Base Deletion,34546,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,122,Cycle,Base Substitution,34799,66.65,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L001,122,Cycle,Base Insertion,34447,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,122,Cycle,Base Deletion,34447,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,123,Cycle,Base Substitution,34805,65.46,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L001,123,Cycle,Base Insertion,34421,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,123,Cycle,Base Deletion,34421,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,124,Cycle,Base Substitution,34695,58.56,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L001,124,Cycle,Base Insertion,34300,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,124,Cycle,Base Deletion,34300,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,125,Cycle,Base Substitution,34561,68.52,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L001,125,Cycle,Base Insertion,34177,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,125,Cycle,Base Deletion,34177,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,126,Cycle,Base Substitution,34357,71.50,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L001,126,Cycle,Base Insertion,33972,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,126,Cycle,Base Deletion,33972,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,127,Cycle,Base Substitution,34352,56.20,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L001,127,Cycle,Base Insertion,33975,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,127,Cycle,Base Deletion,33975,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,128,Cycle,Base Substitution,34263,82.39,26.00,26.63,-0.63,After
REGRESSION.HCC1395_tumor.L001,128,Cycle,Base Insertion,33871,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,128,Cycle,Base Deletion,33871,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,129,Cycle,Base Substitution,34245,63.21,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L001,129,Cycle,Base Insertion,33880,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,129,Cycle,Base Deletion,33880,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,13,Cycle,Base Substitution,39102,40.01,29.00,27.74,1.26,After
REGRESSION.HCC1395_tumor.L001,13,Cycle,Base Insertion,39102,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,13,Cycle,Base Deletion,39102,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,130,Cycle,Base Substitution,34002,70.27,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L001,130,Cycle,Base Insertion,33616,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,130,Cycle,Base Deletion,33616,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,131,Cycle,Base Substitution,33925,64.68,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L001,131,Cycle,Base Insertion,33533,0.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,131,Cycle,Base Deletion,33533,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,132,Cycle,Base Substitution,33814,65.25,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L001,132,Cycle,Base Insertion,33410,0.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,132,Cycle,Base Deletion,33410,2.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,133,Cycle,Base Substitution,33800,78.23,26.00,26.67,-0.67,After
REGRESSION.HCC1395_tumor.L001,133,Cycle,Base Insertion,33409,0.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,133,Cycle,Base Deletion,33409,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,134,Cycle,Base Substitution,33724,75.20,26.00,26.50,-0.50,After
REGRESSION.HCC1395_tumor.L001,134,Cycle,Base Insertion,33329,0.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,134,Cycle,Base Deletion,33329,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,135,Cycle,Base Substitution,33543,73.97,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L001,135,Cycle,Base Insertion,33139,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,135,Cycle,Base Deletion,33139,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,136,Cycle,Base Substitution,33419,48.21,28.00,26.69,1.31,After
REGRESSION.HCC1395_tumor.L001,136,Cycle,Base Insertion,33003,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,136,Cycle,Base Deletion,33003,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,137,Cycle,Base Substitution,33442,65.71,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L001,137,Cycle,Base Insertion,33029,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,137,Cycle,Base Deletion,33029,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,138,Cycle,Base Substitution,33253,71.33,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L001,138,Cycle,Base Insertion,32798,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,138,Cycle,Base Deletion,32798,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,139,Cycle,Base Substitution,33140,73.29,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L001,139,Cycle,Base Insertion,32687,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,139,Cycle,Base Deletion,32687,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,14,Cycle,Base Substitution,39086,44.09,29.00,28.11,0.89,After
REGRESSION.HCC1395_tumor.L001,14,Cycle,Base Insertion,39086,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,14,Cycle,Base Deletion,39086,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,140,Cycle,Base Substitution,33011,64.28,27.00,26.36,0.64,After
REGRESSION.HCC1395_tumor.L001,140,Cycle,Base Insertion,32550,0.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,140,Cycle,Base Deletion,32550,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,141,Cycle,Base Substitution,33034,52.45,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L001,141,Cycle,Base Insertion,32570,0.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,141,Cycle,Base Deletion,32570,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,142,Cycle,Base Substitution,32734,78.43,26.00,26.40,-0.40,After
REGRESSION.HCC1395_tumor.L001,142,Cycle,Base Insertion,32268,0.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,142,Cycle,Base Deletion,32268,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,143,Cycle,Base Substitution,32718,77.88,26.00,25.70,0.30,After
REGRESSION.HCC1395_tumor.L001,143,Cycle,Base Insertion,32265,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,143,Cycle,Base Deletion,32265,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,144,Cycle,Base Substitution,32545,66.90,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L001,144,Cycle,Base Insertion,32099,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,144,Cycle,Base Deletion,32099,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,145,Cycle,Base Substitution,32432,76.11,26.00,26.66,-0.66,After
REGRESSION.HCC1395_tumor.L001,145,Cycle,Base Insertion,31981,0.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,145,Cycle,Base Deletion,31981,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,146,Cycle,Base Substitution,32374,67.09,27.00,26.51,0.49,After
REGRESSION.HCC1395_tumor.L001,146,Cycle,Base Insertion,31972,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,146,Cycle,Base Deletion,31972,0.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,147,Cycle,Base Substitution,32229,63.44,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L001,148,Cycle,Base Substitution,32179,79.21,26.00,26.67,-0.67,After
REGRESSION.HCC1395_tumor.L001,149,Cycle,Base Substitution,32045,81.99,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L001,15,Cycle,Base Substitution,39075,34.31,29.00,27.93,1.07,After
REGRESSION.HCC1395_tumor.L001,15,Cycle,Base Insertion,39075,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,15,Cycle,Base Deletion,39075,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,150,Cycle,Base Substitution,31860,78.16,26.00,26.48,-0.48,After
REGRESSION.HCC1395_tumor.L001,16,Cycle,Base Substitution,38959,38.85,29.00,28.63,0.37,After
REGRESSION.HCC1395_tumor.L001,16,Cycle,Base Insertion,38959,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,16,Cycle,Base Deletion,38959,4.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,17,Cycle,Base Substitution,38797,33.94,29.00,28.67,0.33,After
REGRESSION.HCC1395_tumor.L001,17,Cycle,Base Insertion,38796,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,17,Cycle,Base Deletion,38796,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,18,Cycle,Base Substitution,38964,30.04,30.00,28.53,1.47,After
REGRESSION.HCC1395_tumor.L001,18,Cycle,Base Insertion,38963,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,18,Cycle,Base Deletion,38963,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,19,Cycle,Base Substitution,39020,27.13,30.00,28.68,1.32,After
REGRESSION.HCC1395_tumor.L001,19,Cycle,Base Insertion,39019,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,19,Cycle,Base Deletion,39019,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,2,Cycle,Base Substitution,39209,76.87,27.00,27.19,-0.19,After
REGRESSION.HCC1395_tumor.L001,20,Cycle,Base Substitution,38888,25.18,30.00,28.67,1.33,After
REGRESSION.HCC1395_tumor.L001,20,Cycle,Base Insertion,38887,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,20,Cycle,Base Deletion,38887,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,21,Cycle,Base Substitution,38936,38.08,29.00,28.63,0.37,After
REGRESSION.HCC1395_tumor.L001,21,Cycle,Base Insertion,38936,2.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,21,Cycle,Base Deletion,38936,4.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,22,Cycle,Base Substitution,38905,21.20,31.00,29.13,1.87,After
REGRESSION.HCC1395_tumor.L001,22,Cycle,Base Insertion,38905,2.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,22,Cycle,Base Deletion,38905,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,23,Cycle,Base Substitution,38949,27.85,30.00,28.52,1.48,After
REGRESSION.HCC1395_tumor.L001,23,Cycle,Base Insertion,38949,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,23,Cycle,Base Deletion,38949,5.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,24,Cycle,Base Substitution,38918,25.56,30.00,28.58,1.42,After
REGRESSION.HCC1395_tumor.L001,24,Cycle,Base Insertion,38918,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,24,Cycle,Base Deletion,38918,5.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,25,Cycle,Base Substitution,38890,28.74,30.00,28.83,1.17,After
REGRESSION.HCC1395_tumor.L001,25,Cycle,Base Insertion,38890,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,25,Cycle,Base Deletion,38890,5.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,26,Cycle,Base Substitution,38992,45.37,29.00,27.72,1.28,After
REGRESSION.HCC1395_tumor.L001,26,Cycle,Base Insertion,38992,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,26,Cycle,Base Deletion,38992,4.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,27,Cycle,Base Substitution,38928,29.95,29.00,27.91,1.09,After
REGRESSION.HCC1395_tumor.L001,27,Cycle,Base Insertion,38927,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,27,Cycle,Base Deletion,38927,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,28,Cycle,Base Substitution,38917,43.34,29.00,27.74,1.26,After
REGRESSION.HCC1395_tumor.L001,28,Cycle,Base Insertion,38917,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,28,Cycle,Base Deletion,38917,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,29,Cycle,Base Substitution,38961,38.48,29.00,28.05,0.95,After
REGRESSION.HCC1395_tumor.L001,29,Cycle,Base Insertion,38960,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,29,Cycle,Base Deletion,38960,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,3,Cycle,Base Substitution,39189,102.28,26.00,27.21,-1.21,After
REGRESSION.HCC1395_tumor.L001,30,Cycle,Base Substitution,38899,37.65,29.00,27.95,1.05,After
REGRESSION.HCC1395_tumor.L001,30,Cycle,Base Insertion,38898,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,30,Cycle,Base Deletion,38898,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,31,Cycle,Base Substitution,38835,38.40,29.00,28.03,0.97,After
REGRESSION.HCC1395_tumor.L001,31,Cycle,Base Insertion,38835,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,31,Cycle,Base Deletion,38835,5.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,32,Cycle,Base Substitution,38868,50.94,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L001,32,Cycle,Base Insertion,38866,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,32,Cycle,Base Deletion,38866,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,33,Cycle,Base Substitution,38679,48.89,28.00,27.80,0.20,After
REGRESSION.HCC1395_tumor.L001,33,Cycle,Base Insertion,38677,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,33,Cycle,Base Deletion,38677,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,34,Cycle,Base Substitution,38833,56.09,28.00,27.77,0.23,After
REGRESSION.HCC1395_tumor.L001,34,Cycle,Base Insertion,38831,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,34,Cycle,Base Deletion,38831,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,35,Cycle,Base Substitution,38799,47.48,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L001,35,Cycle,Base Insertion,38795,2.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,35,Cycle,Base Deletion,38795,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,36,Cycle,Base Substitution,38899,49.63,28.00,27.80,0.20,After
REGRESSION.HCC1395_tumor.L001,36,Cycle,Base Insertion,38893,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,36,Cycle,Base Deletion,38893,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,37,Cycle,Base Substitution,38747,40.82,29.00,28.10,0.90,After
REGRESSION.HCC1395_tumor.L001,37,Cycle,Base Insertion,38739,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,37,Cycle,Base Deletion,38739,4.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,38,Cycle,Base Substitution,38878,45.23,29.00,28.06,0.94,After
REGRESSION.HCC1395_tumor.L001,38,Cycle,Base Insertion,38866,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,38,Cycle,Base Deletion,38866,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,39,Cycle,Base Substitution,38814,33.66,29.00,28.17,0.83,After
REGRESSION.HCC1395_tumor.L001,39,Cycle,Base Insertion,38805,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,39,Cycle,Base Deletion,38805,4.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,4,Cycle,Base Substitution,39138,77.83,27.00,27.17,-0.17,After
REGRESSION.HCC1395_tumor.L001,40,Cycle,Base Substitution,38909,40.83,29.00,28.14,0.86,After
REGRESSION.HCC1395_tumor.L001,40,Cycle,Base Insertion,38903,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,40,Cycle,Base Deletion,38903,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,41,Cycle,Base Substitution,38815,56.65,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L001,41,Cycle,Base Insertion,38809,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,41,Cycle,Base Deletion,38809,4.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,42,Cycle,Base Substitution,38712,54.49,28.00,27.81,0.19,After
REGRESSION.HCC1395_tumor.L001,42,Cycle,Base Insertion,38708,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,42,Cycle,Base Deletion,38708,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,43,Cycle,Base Substitution,38699,40.38,29.00,27.70,1.30,After
REGRESSION.HCC1395_tumor.L001,43,Cycle,Base Insertion,38692,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,43,Cycle,Base Deletion,38692,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,44,Cycle,Base Substitution,38859,42.17,29.00,28.35,0.65,After
REGRESSION.HCC1395_tumor.L001,44,Cycle,Base Insertion,38849,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,44,Cycle,Base Deletion,38849,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,45,Cycle,Base Substitution,38585,40.07,29.00,27.89,1.11,After
REGRESSION.HCC1395_tumor.L001,45,Cycle,Base Insertion,38575,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,45,Cycle,Base Deletion,38575,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,46,Cycle,Base Substitution,38675,39.34,29.00,27.88,1.12,After
REGRESSION.HCC1395_tumor.L001,46,Cycle,Base Insertion,38663,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,46,Cycle,Base Deletion,38663,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,47,Cycle,Base Substitution,38632,49.39,29.00,28.10,0.90,After
REGRESSION.HCC1395_tumor.L001,47,Cycle,Base Insertion,38623,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,47,Cycle,Base Deletion,38623,4.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,48,Cycle,Base Substitution,38706,44.45,29.00,28.03,0.97,After
REGRESSION.HCC1395_tumor.L001,48,Cycle,Base Insertion,38692,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,48,Cycle,Base Deletion,38692,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,49,Cycle,Base Substitution,38732,38.25,29.00,28.16,0.84,After
REGRESSION.HCC1395_tumor.L001,49,Cycle,Base Insertion,38715,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,49,Cycle,Base Deletion,38715,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,5,Cycle,Base Substitution,39086,52.16,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L001,5,Cycle,Base Insertion,39086,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,5,Cycle,Base Deletion,39086,0.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,50,Cycle,Base Substitution,38596,48.43,28.00,27.77,0.23,After
REGRESSION.HCC1395_tumor.L001,50,Cycle,Base Insertion,38570,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,50,Cycle,Base Deletion,38570,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,51,Cycle,Base Substitution,38601,53.96,28.00,27.77,0.23,After
REGRESSION.HCC1395_tumor.L001,51,Cycle,Base Insertion,38577,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,51,Cycle,Base Deletion,38577,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,52,Cycle,Base Substitution,38634,46.21,28.00,27.62,0.38,After
REGRESSION.HCC1395_tumor.L001,52,Cycle,Base Insertion,38612,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,52,Cycle,Base Deletion,38612,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,53,Cycle,Base Substitution,38636,46.54,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L001,53,Cycle,Base Insertion,38613,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,53,Cycle,Base Deletion,38613,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,54,Cycle,Base Substitution,38527,46.46,28.00,27.73,0.27,After
REGRESSION.HCC1395_tumor.L001,54,Cycle,Base Insertion,38502,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,54,Cycle,Base Deletion,38502,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,55,Cycle,Base Substitution,38613,41.89,29.00,27.88,1.12,After
REGRESSION.HCC1395_tumor.L001,55,Cycle,Base Insertion,38584,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,55,Cycle,Base Deletion,38584,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,56,Cycle,Base Substitution,38519,50.41,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L001,56,Cycle,Base Insertion,38480,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,56,Cycle,Base Deletion,38480,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,57,Cycle,Base Substitution,38593,76.84,27.00,27.52,-0.52,After
REGRESSION.HCC1395_tumor.L001,57,Cycle,Base Insertion,38542,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,57,Cycle,Base Deletion,38542,5.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,58,Cycle,Base Substitution,38533,43.13,29.00,27.62,1.38,After
REGRESSION.HCC1395_tumor.L001,58,Cycle,Base Insertion,38479,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,58,Cycle,Base Deletion,38479,5.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,59,Cycle,Base Substitution,38540,42.71,29.00,28.08,0.92,After
REGRESSION.HCC1395_tumor.L001,59,Cycle,Base Insertion,38469,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,59,Cycle,Base Deletion,38469,5.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,6,Cycle,Base Substitution,39103,59.83,28.00,27.61,0.39,After
REGRESSION.HCC1395_tumor.L001,6,Cycle,Base Insertion,39103,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,6,Cycle,Base Deletion,39103,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,60,Cycle,Base Substitution,38480,54.72,28.00,27.64,0.36,After
REGRESSION.HCC1395_tumor.L001,60,Cycle,Base Insertion,38414,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,60,Cycle,Base Deletion,38414,5.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,61,Cycle,Base Substitution,38521,52.34,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L001,61,Cycle,Base Insertion,38454,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,61,Cycle,Base Deletion,38454,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,62,Cycle,Base Substitution,38532,49.48,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L001,62,Cycle,Base Insertion,38459,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,62,Cycle,Base Deletion,38459,4.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,63,Cycle,Base Substitution,38436,65.72,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L001,63,Cycle,Base Insertion,38359,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,63,Cycle,Base Deletion,38359,4.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,64,Cycle,Base Substitution,38472,43.35,29.00,27.52,1.48,After
REGRESSION.HCC1395_tumor.L001,64,Cycle,Base Insertion,38382,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,64,Cycle,Base Deletion,38382,5.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,65,Cycle,Base Substitution,38303,49.66,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L001,65,Cycle,Base Insertion,38219,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,65,Cycle,Base Deletion,38219,5.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,66,Cycle,Base Substitution,38220,60.44,28.00,27.52,0.48,After
REGRESSION.HCC1395_tumor.L001,66,Cycle,Base Insertion,38122,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,66,Cycle,Base Deletion,38122,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,67,Cycle,Base Substitution,38396,52.29,28.00,27.62,0.38,After
REGRESSION.HCC1395_tumor.L001,67,Cycle,Base Insertion,38290,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,67,Cycle,Base Deletion,38290,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,68,Cycle,Base Substitution,38350,60.28,28.00,27.83,0.17,After
REGRESSION.HCC1395_tumor.L001,68,Cycle,Base Insertion,38237,1.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,68,Cycle,Base Deletion,38237,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,69,Cycle,Base Substitution,38240,47.06,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L001,69,Cycle,Base Insertion,38117,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,69,Cycle,Base Deletion,38117,4.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,7,Cycle,Base Substitution,39152,46.03,29.00,28.10,0.90,After
REGRESSION.HCC1395_tumor.L001,7,Cycle,Base Insertion,39152,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,7,Cycle,Base Deletion,39152,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,70,Cycle,Base Substitution,38313,53.03,28.00,27.86,0.14,After
REGRESSION.HCC1395_tumor.L001,70,Cycle,Base Insertion,38199,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,70,Cycle,Base Deletion,38199,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,71,Cycle,Base Substitution,38096,49.01,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L001,71,Cycle,Base Insertion,37979,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,71,Cycle,Base Deletion,37979,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,72,Cycle,Base Substitution,38058,56.07,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L001,72,Cycle,Base Insertion,37936,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,72,Cycle,Base Deletion,37936,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,73,Cycle,Base Substitution,38155,71.89,27.00,27.16,-0.16,After
REGRESSION.HCC1395_tumor.L001,73,Cycle,Base Insertion,38017,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,73,Cycle,Base Deletion,38017,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,74,Cycle,Base Substitution,38051,55.60,28.00,27.52,0.48,After
REGRESSION.HCC1395_tumor.L001,74,Cycle,Base Insertion,37911,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,74,Cycle,Base Deletion,37911,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,75,Cycle,Base Substitution,38077,60.77,28.00,27.39,0.61,After
REGRESSION.HCC1395_tumor.L001,75,Cycle,Base Insertion,37926,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,75,Cycle,Base Deletion,37926,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,76,Cycle,Base Substitution,38099,49.52,28.00,27.41,0.59,After
REGRESSION.HCC1395_tumor.L001,76,Cycle,Base Insertion,37938,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,76,Cycle,Base Deletion,37938,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,77,Cycle,Base Substitution,38009,63.92,28.00,27.13,0.87,After
REGRESSION.HCC1395_tumor.L001,77,Cycle,Base Insertion,37852,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,77,Cycle,Base Deletion,37852,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,78,Cycle,Base Substitution,37794,49.91,28.00,27.38,0.62,After
REGRESSION.HCC1395_tumor.L001,78,Cycle,Base Insertion,37619,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,78,Cycle,Base Deletion,37619,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,79,Cycle,Base Substitution,37743,68.38,27.00,27.12,-0.12,After
REGRESSION.HCC1395_tumor.L001,79,Cycle,Base Insertion,37552,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,79,Cycle,Base Deletion,37552,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,8,Cycle,Base Substitution,39148,43.60,29.00,27.80,1.20,After
REGRESSION.HCC1395_tumor.L001,8,Cycle,Base Insertion,39148,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,8,Cycle,Base Deletion,39148,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,80,Cycle,Base Substitution,37821,58.21,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L001,80,Cycle,Base Insertion,37633,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,80,Cycle,Base Deletion,37633,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,81,Cycle,Base Substitution,37800,67.59,27.00,27.35,-0.35,After
REGRESSION.HCC1395_tumor.L001,81,Cycle,Base Insertion,37602,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,81,Cycle,Base Deletion,37602,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,82,Cycle,Base Substitution,37729,57.24,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L001,82,Cycle,Base Insertion,37524,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,82,Cycle,Base Deletion,37524,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,83,Cycle,Base Substitution,37739,77.45,27.00,27.05,-0.05,After
REGRESSION.HCC1395_tumor.L001,83,Cycle,Base Insertion,37541,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,83,Cycle,Base Deletion,37541,4.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,84,Cycle,Base Substitution,37570,70.91,27.00,27.60,-0.60,After
REGRESSION.HCC1395_tumor.L001,84,Cycle,Base Insertion,37348,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,84,Cycle,Base Deletion,37348,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,85,Cycle,Base Substitution,37617,57.52,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L001,85,Cycle,Base Insertion,37388,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,85,Cycle,Base Deletion,37388,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,86,Cycle,Base Substitution,37383,64.02,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L001,86,Cycle,Base Insertion,37168,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,86,Cycle,Base Deletion,37168,3.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,87,Cycle,Base Substitution,37440,57.19,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L001,87,Cycle,Base Insertion,37219,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,87,Cycle,Base Deletion,37219,4.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,88,Cycle,Base Substitution,37378,64.01,28.00,27.13,0.87,After
REGRESSION.HCC1395_tumor.L001,88,Cycle,Base Insertion,37156,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,88,Cycle,Base Deletion,37156,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,89,Cycle,Base Substitution,37449,59.25,28.00,27.15,0.85,After
REGRESSION.HCC1395_tumor.L001,89,Cycle,Base Insertion,37229,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,89,Cycle,Base Deletion,37229,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,9,Cycle,Base Substitution,39166,37.41,29.00,27.59,1.41,After
REGRESSION.HCC1395_tumor.L001,9,Cycle,Base Insertion,39166,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,9,Cycle,Base Deletion,39166,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,90,Cycle,Base Substitution,37387,67.49,27.00,27.06,-0.06,After
REGRESSION.HCC1395_tumor.L001,90,Cycle,Base Insertion,37148,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,90,Cycle,Base Deletion,37148,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,91,Cycle,Base Substitution,37317,60.69,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L001,91,Cycle,Base Insertion,37091,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,91,Cycle,Base Deletion,37091,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,92,Cycle,Base Substitution,37306,77.44,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L001,92,Cycle,Base Insertion,37043,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,92,Cycle,Base Deletion,37043,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,93,Cycle,Base Substitution,37089,63.95,28.00,27.36,0.64,After
REGRESSION.HCC1395_tumor.L001,93,Cycle,Base Insertion,36809,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,93,Cycle,Base Deletion,36809,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,94,Cycle,Base Substitution,37152,67.13,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L001,94,Cycle,Base Insertion,36873,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,94,Cycle,Base Deletion,36873,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,95,Cycle,Base Substitution,37060,68.09,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L001,95,Cycle,Base Insertion,36760,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,95,Cycle,Base Deletion,36760,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,96,Cycle,Base Substitution,37010,72.05,27.00,27.16,-0.16,After
REGRESSION.HCC1395_tumor.L001,96,Cycle,Base Insertion,36709,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,96,Cycle,Base Deletion,36709,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,97,Cycle,Base Substitution,36950,76.24,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L001,97,Cycle,Base Insertion,36661,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,97,Cycle,Base Deletion,36661,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,98,Cycle,Base Substitution,36692,73.00,27.00,27.32,-0.32,After
REGRESSION.HCC1395_tumor.L001,98,Cycle,Base Insertion,36407,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,98,Cycle,Base Deletion,36407,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,99,Cycle,Base Substitution,36705,67.67,27.00,27.09,-0.09,After
REGRESSION.HCC1395_tumor.L001,99,Cycle,Base Insertion,36433,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,99,Cycle,Base Deletion,36433,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L001,10,QualityScore,Base Substitution,26734,2854.95,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L001,11,QualityScore,Base Substitution,15245,1107.94,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L001,12,QualityScore,Base Substitution,11996,719.42,12.00,12.00,0.00,After
REGRESSION.HCC1395_tumor.L001,13,QualityScore,Base Substitution,21104,748.26,14.00,13.00,1.00,After
REGRESSION.HCC1395_tumor.L001,14,QualityScore,Base Substitution,13192,218.95,17.00,14.00,3.00,After
REGRESSION.HCC1395_tumor.L001,15,QualityScore,Base Substitution,17272,13.56,21.00,15.00,6.00,After
REGRESSION.HCC1395_tumor.L001,16,QualityScore,Base Substitution,8211,0.78,20.00,16.00,4.00,After
REGRESSION.HCC1395_tumor.L001,17,QualityScore,Base Substitution,14371,1.31,22.00,17.00,5.00,After
REGRESSION.HCC1395_tumor.L001,21,QualityScore,Base Substitution,103,0.00,21.00,21.00,0.00,After
REGRESSION.HCC1395_tumor.L001,22,QualityScore,Base Substitution,30847,238.81,21.00,22.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,23,QualityScore,Base Substitution,48896,344.64,22.00,23.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,24,QualityScore,Base Substitution,161659,616.09,24.00,24.00,0.00,After
REGRESSION.HCC1395_tumor.L001,25,QualityScore,Base Substitution,99901,139.82,27.00,25.00,2.00,After
REGRESSION.HCC1395_tumor.L001,28,QualityScore,Base Substitution,7743,3.01,28.00,28.00,0.00,After
REGRESSION.HCC1395_tumor.L001,29,QualityScore,Base Substitution,69319,124.14,28.00,29.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,30,QualityScore,Base Substitution,2513041,1539.07,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L001,31,QualityScore,Base Substitution,2884013,1273.09,33.00,31.00,2.00,After
REGRESSION.HCC1395_tumor.L001,32,QualityScore,Base Substitution,4680185,1139.18,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L001,33,QualityScore,Base Substitution,398194,68.81,35.00,33.00,2.00,After
REGRESSION.HCC1395_tumor.L001,45,QualityScore,Base Insertion,11074895,478.23,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,45,QualityScore,Base Deletion,11074895,960.45,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L001,8,QualityScore,Base Substitution,1117,208.43,7.00,8.00,-1.00,After
REGRESSION.HCC1395_tumor.L001,9,QualityScore,Base Substitution,51752,7388.79,8.00,9.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,AA,Context,Base Substitution,845812,1915.58,26.00,25.42,0.58,After
REGRESSION.HCC1395_tumor.L002,AAA,Context,Base Insertion,300711,70.15,42.00,45.00,-3.00,After
REGRESSION.HCC1395_tumor.L002,AAA,Context,Base Deletion,300711,221.20,36.00,45.00,-9.00,After
REGRESSION.HCC1395_tumor.L002,AAC,Context,Base Insertion,133858,3.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AAC,Context,Base Deletion,133858,7.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AAG,Context,Base Insertion,200918,7.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AAG,Context,Base Deletion,200918,8.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AAT,Context,Base Insertion,175873,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AAT,Context,Base Deletion,175873,13.96,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,AC,Context,Base Substitution,536687,1895.30,25.00,24.68,0.32,After
REGRESSION.HCC1395_tumor.L002,ACA,Context,Base Insertion,206755,20.74,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,ACA,Context,Base Deletion,206755,39.49,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L002,ACC,Context,Base Insertion,148448,6.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ACC,Context,Base Deletion,148448,6.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ACG,Context,Base Insertion,31047,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ACG,Context,Base Deletion,31047,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ACT,Context,Base Insertion,159505,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ACT,Context,Base Deletion,159505,11.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AG,Context,Base Substitution,811875,635.09,31.00,28.67,2.33,After
REGRESSION.HCC1395_tumor.L002,AGA,Context,Base Insertion,226389,5.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AGA,Context,Base Deletion,226389,9.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AGC,Context,Base Insertion,194720,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AGC,Context,Base Deletion,194720,9.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AGG,Context,Base Insertion,231032,14.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AGG,Context,Base Deletion,231032,8.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AGT,Context,Base Insertion,155854,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AGT,Context,Base Deletion,155854,4.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,AT,Context,Base Substitution,608287,633.00,30.00,27.55,2.45,After
REGRESSION.HCC1395_tumor.L002,ATA,Context,Base Insertion,135412,7.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ATA,Context,Base Deletion,135412,5.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ATC,Context,Base Insertion,123153,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ATC,Context,Base Deletion,123153,9.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ATG,Context,Base Insertion,176334,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ATG,Context,Base Deletion,176334,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ATT,Context,Base Insertion,183623,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,ATT,Context,Base Deletion,183623,7.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CA,Context,Base Substitution,867696,1909.14,27.00,25.72,1.28,After
REGRESSION.HCC1395_tumor.L002,CAA,Context,Base Insertion,174415,4.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CAA,Context,Base Deletion,174415,14.06,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,CAC,Context,Base Insertion,185985,24.96,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,CAC,Context,Base Deletion,185985,40.64,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L002,CAG,Context,Base Insertion,296431,7.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CAG,Context,Base Deletion,296431,8.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CAT,Context,Base Insertion,172053,8.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CAT,Context,Base Deletion,172053,5.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CC,Context,Base Substitution,772786,2403.17,25.00,24.66,0.34,After
REGRESSION.HCC1395_tumor.L002,CCA,Context,Base Insertion,249053,6.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CCA,Context,Base Deletion,249053,7.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CCC,Context,Base Insertion,213878,13.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CCC,Context,Base Deletion,213878,16.21,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,CCG,Context,Base Insertion,54076,7.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CCG,Context,Base Deletion,54076,6.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CCT,Context,Base Insertion,245666,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CCT,Context,Base Deletion,245666,9.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CG,Context,Base Substitution,162112,564.08,25.00,24.78,0.22,After
REGRESSION.HCC1395_tumor.L002,CGA,Context,Base Insertion,57015,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CGA,Context,Base Deletion,57015,0.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CGC,Context,Base Insertion,81260,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CGC,Context,Base Deletion,81260,8.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CGG,Context,Base Insertion,98058,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CGG,Context,Base Deletion,98058,8.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CGT,Context,Base Insertion,63444,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CGT,Context,Base Deletion,63444,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CT,Context,Base Substitution,849789,407.26,33.00,29.59,3.41,After
REGRESSION.HCC1395_tumor.L002,CTA,Context,Base Insertion,97292,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CTA,Context,Base Deletion,97292,7.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CTC,Context,Base Insertion,205666,5.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CTC,Context,Base Deletion,205666,15.58,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,CTG,Context,Base Insertion,295662,2.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CTG,Context,Base Deletion,295662,13.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CTT,Context,Base Insertion,212109,6.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,CTT,Context,Base Deletion,212109,9.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GA,Context,Base Substitution,712219,1063.41,28.00,26.50,1.50,After
REGRESSION.HCC1395_tumor.L002,GAA,Context,Base Insertion,212008,5.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GAA,Context,Base Deletion,212008,6.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GAC,Context,Base Insertion,119459,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GAC,Context,Base Deletion,119459,7.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GAG,Context,Base Insertion,211040,3.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GAG,Context,Base Deletion,211040,7.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GAT,Context,Base Insertion,127021,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GAT,Context,Base Deletion,127021,4.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GC,Context,Base Substitution,670491,1511.44,26.00,25.89,0.11,After
REGRESSION.HCC1395_tumor.L002,GCA,Context,Base Insertion,207593,5.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GCA,Context,Base Deletion,207593,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GCC,Context,Base Insertion,201931,4.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GCC,Context,Base Deletion,201931,12.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GCG,Context,Base Insertion,49131,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GCG,Context,Base Deletion,49131,6.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GCT,Context,Base Insertion,212290,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GCT,Context,Base Deletion,212290,5.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GG,Context,Base Substitution,798819,730.19,30.00,27.63,2.37,After
REGRESSION.HCC1395_tumor.L002,GGA,Context,Base Insertion,217033,22.44,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,GGA,Context,Base Deletion,217033,14.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GGC,Context,Base Insertion,198736,2.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GGC,Context,Base Deletion,198736,6.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GGG,Context,Base Insertion,220111,9.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GGG,Context,Base Deletion,220111,28.25,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,GGT,Context,Base Insertion,160316,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GGT,Context,Base Deletion,160316,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GT,Context,Base Substitution,596023,1025.01,28.00,26.85,1.15,After
REGRESSION.HCC1395_tumor.L002,GTA,Context,Base Insertion,102374,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GTA,Context,Base Deletion,102374,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GTC,Context,Base Insertion,127749,4.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GTC,Context,Base Deletion,127749,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GTG,Context,Base Insertion,202323,17.38,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,GTG,Context,Base Deletion,202323,32.77,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,GTT,Context,Base Insertion,150389,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,GTT,Context,Base Deletion,150389,11.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TA,Context,Base Substitution,487227,1251.30,26.00,24.88,1.12,After
REGRESSION.HCC1395_tumor.L002,TAA,Context,Base Insertion,151391,11.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TAA,Context,Base Deletion,151391,17.55,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,TAC,Context,Base Insertion,93954,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TAC,Context,Base Deletion,93954,5.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TAG,Context,Base Insertion,97233,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TAG,Context,Base Deletion,97233,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TAT,Context,Base Insertion,128916,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TAT,Context,Base Deletion,128916,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TC,Context,Base Substitution,655582,1671.66,26.00,25.42,0.58,After
REGRESSION.HCC1395_tumor.L002,TCA,Context,Base Insertion,197473,6.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TCA,Context,Base Deletion,197473,11.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TCC,Context,Base Insertion,203498,28.89,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,TCC,Context,Base Deletion,203498,8.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TCG,Context,Base Insertion,26638,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TCG,Context,Base Deletion,26638,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TCT,Context,Base Insertion,226583,7.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TCT,Context,Base Deletion,226583,13.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TG,Context,Base Substitution,853288,369.32,33.00,29.35,3.65,After
REGRESSION.HCC1395_tumor.L002,TGA,Context,Base Insertion,206450,2.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TGA,Context,Base Deletion,206450,3.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TGC,Context,Base Insertion,191449,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TGC,Context,Base Deletion,191449,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TGG,Context,Base Insertion,243818,6.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TGG,Context,Base Deletion,243818,7.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TGT,Context,Base Insertion,212478,16.48,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,TGT,Context,Base Deletion,212478,35.71,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L002,TT,Context,Base Substitution,848969,933.74,30.00,28.22,1.78,After
REGRESSION.HCC1395_tumor.L002,TTA,Context,Base Insertion,148568,10.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TTA,Context,Base Deletion,148568,8.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TTC,Context,Base Insertion,195075,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TTC,Context,Base Deletion,195075,9.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TTG,Context,Base Insertion,172945,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TTG,Context,Base Deletion,172945,5.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,TTT,Context,Base Insertion,297087,64.87,42.00,45.00,-3.00,After
REGRESSION.HCC1395_tumor.L002,TTT,Context,Base Deletion,297087,156.89,38.00,45.00,-7.00,After
REGRESSION.HCC1395_tumor.L002,-1,Cycle,Base Substitution,39032,179.47,23.00,23.56,-0.56,After
REGRESSION.HCC1395_tumor.L002,-10,Cycle,Base Substitution,39233,53.60,28.00,27.35,0.65,After
REGRESSION.HCC1395_tumor.L002,-10,Cycle,Base Insertion,39233,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-10,Cycle,Base Deletion,39233,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-100,Cycle,Base Substitution,36766,82.39,26.00,26.49,-0.49,After
REGRESSION.HCC1395_tumor.L002,-100,Cycle,Base Insertion,36459,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-100,Cycle,Base Deletion,36459,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-101,Cycle,Base Substitution,36716,69.29,27.00,26.30,0.70,After
REGRESSION.HCC1395_tumor.L002,-101,Cycle,Base Insertion,36374,4.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-101,Cycle,Base Deletion,36374,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-102,Cycle,Base Substitution,36609,83.95,26.00,26.31,-0.31,After
REGRESSION.HCC1395_tumor.L002,-102,Cycle,Base Insertion,36296,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-102,Cycle,Base Deletion,36296,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-103,Cycle,Base Substitution,36567,80.29,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L002,-103,Cycle,Base Insertion,36229,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-103,Cycle,Base Deletion,36229,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-104,Cycle,Base Substitution,36664,74.70,27.00,26.45,0.55,After
REGRESSION.HCC1395_tumor.L002,-104,Cycle,Base Insertion,36311,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-104,Cycle,Base Deletion,36311,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-105,Cycle,Base Substitution,36508,58.68,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L002,-105,Cycle,Base Insertion,36191,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-105,Cycle,Base Deletion,36191,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-106,Cycle,Base Substitution,36332,78.27,27.00,26.28,0.72,After
REGRESSION.HCC1395_tumor.L002,-106,Cycle,Base Insertion,36018,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-106,Cycle,Base Deletion,36018,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-107,Cycle,Base Substitution,36264,73.89,27.00,26.44,0.56,After
REGRESSION.HCC1395_tumor.L002,-107,Cycle,Base Insertion,35953,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-107,Cycle,Base Deletion,35953,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-108,Cycle,Base Substitution,36163,88.27,26.00,25.64,0.36,After
REGRESSION.HCC1395_tumor.L002,-108,Cycle,Base Insertion,35869,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-108,Cycle,Base Deletion,35869,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-109,Cycle,Base Substitution,36054,64.70,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L002,-109,Cycle,Base Insertion,35745,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-109,Cycle,Base Deletion,35745,4.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-11,Cycle,Base Substitution,39203,45.32,29.00,27.56,1.44,After
REGRESSION.HCC1395_tumor.L002,-11,Cycle,Base Insertion,39202,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-11,Cycle,Base Deletion,39202,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-110,Cycle,Base Substitution,35991,90.04,26.00,26.19,-0.19,After
REGRESSION.HCC1395_tumor.L002,-110,Cycle,Base Insertion,35659,0.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-110,Cycle,Base Deletion,35659,4.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-111,Cycle,Base Substitution,36016,76.59,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L002,-111,Cycle,Base Insertion,35695,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-111,Cycle,Base Deletion,35695,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-112,Cycle,Base Substitution,35838,91.77,26.00,25.52,0.48,After
REGRESSION.HCC1395_tumor.L002,-112,Cycle,Base Insertion,35509,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-112,Cycle,Base Deletion,35509,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-113,Cycle,Base Substitution,35829,82.61,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L002,-113,Cycle,Base Insertion,35514,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-113,Cycle,Base Deletion,35514,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-114,Cycle,Base Substitution,35678,81.00,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L002,-114,Cycle,Base Insertion,35353,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-114,Cycle,Base Deletion,35353,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-115,Cycle,Base Substitution,35603,74.35,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L002,-115,Cycle,Base Insertion,35271,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-115,Cycle,Base Deletion,35271,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-116,Cycle,Base Substitution,35644,70.99,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L002,-116,Cycle,Base Insertion,35284,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-116,Cycle,Base Deletion,35284,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-117,Cycle,Base Substitution,35319,81.58,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L002,-117,Cycle,Base Insertion,34935,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-117,Cycle,Base Deletion,34935,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-118,Cycle,Base Substitution,35359,79.60,26.00,26.39,-0.39,After
REGRESSION.HCC1395_tumor.L002,-118,Cycle,Base Insertion,34978,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-118,Cycle,Base Deletion,34978,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-119,Cycle,Base Substitution,35193,101.83,26.00,26.16,-0.16,After
REGRESSION.HCC1395_tumor.L002,-119,Cycle,Base Insertion,34799,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-119,Cycle,Base Deletion,34799,2.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-12,Cycle,Base Substitution,39299,59.26,28.00,27.75,0.25,After
REGRESSION.HCC1395_tumor.L002,-12,Cycle,Base Insertion,39298,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-12,Cycle,Base Deletion,39298,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-120,Cycle,Base Substitution,35120,90.74,26.00,26.07,-0.07,After
REGRESSION.HCC1395_tumor.L002,-120,Cycle,Base Insertion,34756,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-120,Cycle,Base Deletion,34756,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-121,Cycle,Base Substitution,35059,86.61,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L002,-121,Cycle,Base Insertion,34708,0.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-121,Cycle,Base Deletion,34708,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-122,Cycle,Base Substitution,35074,70.81,27.00,26.30,0.70,After
REGRESSION.HCC1395_tumor.L002,-122,Cycle,Base Insertion,34698,0.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-122,Cycle,Base Deletion,34698,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-123,Cycle,Base Substitution,34979,72.61,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L002,-123,Cycle,Base Insertion,34610,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-123,Cycle,Base Deletion,34610,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-124,Cycle,Base Substitution,34810,78.11,26.00,26.23,-0.23,After
REGRESSION.HCC1395_tumor.L002,-124,Cycle,Base Insertion,34467,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-124,Cycle,Base Deletion,34467,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-125,Cycle,Base Substitution,34669,73.20,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L002,-125,Cycle,Base Insertion,34298,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-125,Cycle,Base Deletion,34298,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-126,Cycle,Base Substitution,34649,97.23,25.00,25.63,-0.63,After
REGRESSION.HCC1395_tumor.L002,-126,Cycle,Base Insertion,34278,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-126,Cycle,Base Deletion,34278,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-127,Cycle,Base Substitution,34430,95.00,26.00,25.59,0.41,After
REGRESSION.HCC1395_tumor.L002,-127,Cycle,Base Insertion,34066,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-127,Cycle,Base Deletion,34066,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-128,Cycle,Base Substitution,34445,73.59,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L002,-128,Cycle,Base Insertion,34050,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-128,Cycle,Base Deletion,34050,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-129,Cycle,Base Substitution,34334,76.40,27.00,26.12,0.88,After
REGRESSION.HCC1395_tumor.L002,-129,Cycle,Base Insertion,33943,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-129,Cycle,Base Deletion,33943,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-13,Cycle,Base Substitution,39313,61.05,28.00,27.82,0.18,After
REGRESSION.HCC1395_tumor.L002,-13,Cycle,Base Insertion,39313,0.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-13,Cycle,Base Deletion,39313,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-130,Cycle,Base Substitution,34258,69.76,27.00,26.15,0.85,After
REGRESSION.HCC1395_tumor.L002,-130,Cycle,Base Insertion,33891,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-130,Cycle,Base Deletion,33891,2.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-131,Cycle,Base Substitution,34160,81.45,26.00,26.22,-0.22,After
REGRESSION.HCC1395_tumor.L002,-131,Cycle,Base Insertion,33769,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-131,Cycle,Base Deletion,33769,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-132,Cycle,Base Substitution,34136,82.86,26.00,25.91,0.09,After
REGRESSION.HCC1395_tumor.L002,-132,Cycle,Base Insertion,33721,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-132,Cycle,Base Deletion,33721,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-133,Cycle,Base Substitution,33939,68.49,27.00,26.10,0.90,After
REGRESSION.HCC1395_tumor.L002,-133,Cycle,Base Insertion,33524,0.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-133,Cycle,Base Deletion,33524,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-134,Cycle,Base Substitution,33858,80.15,26.00,26.09,-0.09,After
REGRESSION.HCC1395_tumor.L002,-134,Cycle,Base Insertion,33416,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-134,Cycle,Base Deletion,33416,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-135,Cycle,Base Substitution,33718,94.94,25.00,25.53,-0.53,After
REGRESSION.HCC1395_tumor.L002,-135,Cycle,Base Insertion,33288,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-135,Cycle,Base Deletion,33288,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-136,Cycle,Base Substitution,33575,73.36,27.00,26.11,0.89,After
REGRESSION.HCC1395_tumor.L002,-136,Cycle,Base Insertion,33127,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-136,Cycle,Base Deletion,33127,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-137,Cycle,Base Substitution,33610,72.73,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L002,-137,Cycle,Base Insertion,33146,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-137,Cycle,Base Deletion,33146,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-138,Cycle,Base Substitution,33400,91.84,26.00,26.07,-0.07,After
REGRESSION.HCC1395_tumor.L002,-138,Cycle,Base Insertion,32931,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-138,Cycle,Base Deletion,32931,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-139,Cycle,Base Substitution,33301,72.09,26.00,25.89,0.11,After
REGRESSION.HCC1395_tumor.L002,-139,Cycle,Base Insertion,32802,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-139,Cycle,Base Deletion,32802,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-14,Cycle,Base Substitution,39259,57.14,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L002,-14,Cycle,Base Insertion,39258,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-14,Cycle,Base Deletion,39258,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-140,Cycle,Base Substitution,33187,75.20,26.00,25.73,0.27,After
REGRESSION.HCC1395_tumor.L002,-140,Cycle,Base Insertion,32657,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-140,Cycle,Base Deletion,32657,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-141,Cycle,Base Substitution,33205,75.18,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L002,-141,Cycle,Base Insertion,32628,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-141,Cycle,Base Deletion,32628,0.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-142,Cycle,Base Substitution,33022,69.18,27.00,26.16,0.84,After
REGRESSION.HCC1395_tumor.L002,-142,Cycle,Base Insertion,32336,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-142,Cycle,Base Deletion,32336,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-143,Cycle,Base Substitution,32868,50.23,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L002,-143,Cycle,Base Insertion,32144,0.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-143,Cycle,Base Deletion,32144,0.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-144,Cycle,Base Substitution,32745,47.16,28.00,26.75,1.25,After
REGRESSION.HCC1395_tumor.L002,-144,Cycle,Base Insertion,31999,0.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-144,Cycle,Base Deletion,31999,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-145,Cycle,Base Substitution,32651,51.21,27.00,26.23,0.77,After
REGRESSION.HCC1395_tumor.L002,-145,Cycle,Base Insertion,25139,0.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-145,Cycle,Base Deletion,25139,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-146,Cycle,Base Substitution,32344,23.08,28.00,26.15,1.85,After
REGRESSION.HCC1395_tumor.L002,-146,Cycle,Base Insertion,25006,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-146,Cycle,Base Deletion,25006,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-147,Cycle,Base Substitution,32220,17.27,26.00,22.36,3.64,After
REGRESSION.HCC1395_tumor.L002,-148,Cycle,Base Substitution,31921,22.20,23.00,15.18,7.82,After
REGRESSION.HCC1395_tumor.L002,-149,Cycle,Base Substitution,19827,24.44,22.00,14.17,7.83,After
REGRESSION.HCC1395_tumor.L002,-15,Cycle,Base Substitution,39230,62.02,28.00,27.56,0.44,After
REGRESSION.HCC1395_tumor.L002,-15,Cycle,Base Insertion,39230,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-15,Cycle,Base Deletion,39230,4.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-150,Cycle,Base Substitution,6978,12.53,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L002,-16,Cycle,Base Substitution,39312,54.94,28.00,27.86,0.14,After
REGRESSION.HCC1395_tumor.L002,-16,Cycle,Base Insertion,39312,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-16,Cycle,Base Deletion,39312,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-17,Cycle,Base Substitution,39261,62.47,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L002,-17,Cycle,Base Insertion,39261,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-17,Cycle,Base Deletion,39261,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-18,Cycle,Base Substitution,39155,68.12,28.00,27.40,0.60,After
REGRESSION.HCC1395_tumor.L002,-18,Cycle,Base Insertion,39154,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-18,Cycle,Base Deletion,39154,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-19,Cycle,Base Substitution,39258,66.29,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L002,-19,Cycle,Base Insertion,39257,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-19,Cycle,Base Deletion,39257,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-2,Cycle,Base Substitution,39393,140.75,25.00,25.48,-0.48,After
REGRESSION.HCC1395_tumor.L002,-20,Cycle,Base Substitution,39199,54.31,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L002,-20,Cycle,Base Insertion,39197,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-20,Cycle,Base Deletion,39197,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-21,Cycle,Base Substitution,39147,55.24,28.00,27.72,0.28,After
REGRESSION.HCC1395_tumor.L002,-21,Cycle,Base Insertion,39145,0.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-21,Cycle,Base Deletion,39145,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-22,Cycle,Base Substitution,39070,58.40,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L002,-22,Cycle,Base Insertion,39069,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-22,Cycle,Base Deletion,39069,3.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-23,Cycle,Base Substitution,39198,48.04,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L002,-23,Cycle,Base Insertion,39197,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-23,Cycle,Base Deletion,39197,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-24,Cycle,Base Substitution,39192,53.49,28.00,27.51,0.49,After
REGRESSION.HCC1395_tumor.L002,-24,Cycle,Base Insertion,39191,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-24,Cycle,Base Deletion,39191,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-25,Cycle,Base Substitution,39127,57.51,28.00,27.44,0.56,After
REGRESSION.HCC1395_tumor.L002,-25,Cycle,Base Insertion,39126,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-25,Cycle,Base Deletion,39126,4.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-26,Cycle,Base Substitution,39126,49.89,28.00,26.67,1.33,After
REGRESSION.HCC1395_tumor.L002,-26,Cycle,Base Insertion,39125,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-26,Cycle,Base Deletion,39125,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-27,Cycle,Base Substitution,39148,53.63,28.00,26.59,1.41,After
REGRESSION.HCC1395_tumor.L002,-27,Cycle,Base Insertion,39146,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-27,Cycle,Base Deletion,39146,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-28,Cycle,Base Substitution,39099,64.38,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L002,-28,Cycle,Base Insertion,39096,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-28,Cycle,Base Deletion,39096,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-29,Cycle,Base Substitution,39224,64.45,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L002,-29,Cycle,Base Insertion,39220,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-29,Cycle,Base Deletion,39220,4.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-3,Cycle,Base Substitution,39490,137.15,25.00,26.40,-1.40,After
REGRESSION.HCC1395_tumor.L002,-30,Cycle,Base Substitution,39123,59.71,28.00,26.39,1.61,After
REGRESSION.HCC1395_tumor.L002,-30,Cycle,Base Insertion,39118,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-30,Cycle,Base Deletion,39118,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-31,Cycle,Base Substitution,39092,69.44,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L002,-31,Cycle,Base Insertion,39088,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-31,Cycle,Base Deletion,39088,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-32,Cycle,Base Substitution,39180,52.74,28.00,26.76,1.24,After
REGRESSION.HCC1395_tumor.L002,-32,Cycle,Base Insertion,39175,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-32,Cycle,Base Deletion,39175,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-33,Cycle,Base Substitution,39095,61.87,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L002,-33,Cycle,Base Insertion,39089,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-33,Cycle,Base Deletion,39089,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-34,Cycle,Base Substitution,39070,59.63,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L002,-34,Cycle,Base Insertion,39063,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-34,Cycle,Base Deletion,39063,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-35,Cycle,Base Substitution,39082,63.61,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L002,-35,Cycle,Base Insertion,39074,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-35,Cycle,Base Deletion,39074,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-36,Cycle,Base Substitution,39014,54.24,28.00,26.56,1.44,After
REGRESSION.HCC1395_tumor.L002,-36,Cycle,Base Insertion,39010,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-36,Cycle,Base Deletion,39010,5.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-37,Cycle,Base Substitution,39081,60.23,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L002,-37,Cycle,Base Insertion,39073,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-37,Cycle,Base Deletion,39073,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-38,Cycle,Base Substitution,38996,62.84,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L002,-38,Cycle,Base Insertion,38990,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-38,Cycle,Base Deletion,38990,4.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-39,Cycle,Base Substitution,39020,63.69,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L002,-39,Cycle,Base Insertion,39015,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-39,Cycle,Base Deletion,39015,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-4,Cycle,Base Substitution,39430,80.64,27.00,26.09,0.91,After
REGRESSION.HCC1395_tumor.L002,-40,Cycle,Base Substitution,38964,60.78,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L002,-40,Cycle,Base Insertion,38960,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-40,Cycle,Base Deletion,38960,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-41,Cycle,Base Substitution,38963,60.81,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L002,-41,Cycle,Base Insertion,38962,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-41,Cycle,Base Deletion,38962,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-42,Cycle,Base Substitution,38905,54.36,28.00,26.60,1.40,After
REGRESSION.HCC1395_tumor.L002,-42,Cycle,Base Insertion,38904,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-42,Cycle,Base Deletion,38904,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-43,Cycle,Base Substitution,39023,66.41,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L002,-43,Cycle,Base Insertion,39018,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-43,Cycle,Base Deletion,39018,3.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-44,Cycle,Base Substitution,38799,56.63,28.00,26.76,1.24,After
REGRESSION.HCC1395_tumor.L002,-44,Cycle,Base Insertion,38793,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-44,Cycle,Base Deletion,38793,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-45,Cycle,Base Substitution,38971,51.16,28.00,26.90,1.10,After
REGRESSION.HCC1395_tumor.L002,-45,Cycle,Base Insertion,38962,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-45,Cycle,Base Deletion,38962,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-46,Cycle,Base Substitution,38926,64.72,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L002,-46,Cycle,Base Insertion,38915,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-46,Cycle,Base Deletion,38915,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-47,Cycle,Base Substitution,38916,50.78,28.00,27.25,0.75,After
REGRESSION.HCC1395_tumor.L002,-47,Cycle,Base Insertion,38909,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-47,Cycle,Base Deletion,38909,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-48,Cycle,Base Substitution,38831,46.78,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L002,-48,Cycle,Base Insertion,38821,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-48,Cycle,Base Deletion,38821,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-49,Cycle,Base Substitution,38911,68.30,28.00,27.07,0.93,After
REGRESSION.HCC1395_tumor.L002,-49,Cycle,Base Insertion,38896,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-49,Cycle,Base Deletion,38896,5.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-5,Cycle,Base Substitution,39374,65.69,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L002,-5,Cycle,Base Insertion,39374,0.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-5,Cycle,Base Deletion,39374,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-50,Cycle,Base Substitution,38745,65.16,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L002,-50,Cycle,Base Insertion,38716,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-50,Cycle,Base Deletion,38716,5.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-51,Cycle,Base Substitution,38791,55.57,28.00,26.71,1.29,After
REGRESSION.HCC1395_tumor.L002,-51,Cycle,Base Insertion,38755,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-51,Cycle,Base Deletion,38755,4.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-52,Cycle,Base Substitution,38812,64.28,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L002,-52,Cycle,Base Insertion,38774,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-52,Cycle,Base Deletion,38774,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-53,Cycle,Base Substitution,38749,58.03,28.00,26.88,1.12,After
REGRESSION.HCC1395_tumor.L002,-53,Cycle,Base Insertion,38712,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-53,Cycle,Base Deletion,38712,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-54,Cycle,Base Substitution,38822,63.28,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L002,-54,Cycle,Base Insertion,38791,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-54,Cycle,Base Deletion,38791,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-55,Cycle,Base Substitution,38926,63.07,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L002,-55,Cycle,Base Insertion,38891,4.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-55,Cycle,Base Deletion,38891,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-56,Cycle,Base Substitution,38772,67.10,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L002,-56,Cycle,Base Insertion,38734,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-56,Cycle,Base Deletion,38734,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-57,Cycle,Base Substitution,38727,64.55,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L002,-57,Cycle,Base Insertion,38672,2.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-57,Cycle,Base Deletion,38672,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-58,Cycle,Base Substitution,38839,56.64,28.00,26.99,1.01,After
REGRESSION.HCC1395_tumor.L002,-58,Cycle,Base Insertion,38775,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-58,Cycle,Base Deletion,38775,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-59,Cycle,Base Substitution,38785,59.65,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L002,-59,Cycle,Base Insertion,38715,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-59,Cycle,Base Deletion,38715,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-6,Cycle,Base Substitution,39329,68.19,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L002,-6,Cycle,Base Insertion,39329,0.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-6,Cycle,Base Deletion,39329,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-60,Cycle,Base Substitution,38601,65.41,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L002,-60,Cycle,Base Insertion,38529,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-60,Cycle,Base Deletion,38529,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-61,Cycle,Base Substitution,38777,71.30,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L002,-61,Cycle,Base Insertion,38701,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-61,Cycle,Base Deletion,38701,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-62,Cycle,Base Substitution,38606,55.39,28.00,27.20,0.80,After
REGRESSION.HCC1395_tumor.L002,-62,Cycle,Base Insertion,38531,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-62,Cycle,Base Deletion,38531,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-63,Cycle,Base Substitution,38581,58.25,28.00,26.84,1.16,After
REGRESSION.HCC1395_tumor.L002,-63,Cycle,Base Insertion,38513,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-63,Cycle,Base Deletion,38513,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-64,Cycle,Base Substitution,38605,53.75,28.00,26.98,1.02,After
REGRESSION.HCC1395_tumor.L002,-64,Cycle,Base Insertion,38523,2.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-64,Cycle,Base Deletion,38523,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-65,Cycle,Base Substitution,38483,68.58,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L002,-65,Cycle,Base Insertion,38392,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-65,Cycle,Base Deletion,38392,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-66,Cycle,Base Substitution,38463,64.37,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L002,-66,Cycle,Base Insertion,38375,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-66,Cycle,Base Deletion,38375,4.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-67,Cycle,Base Substitution,38478,51.27,28.00,26.88,1.12,After
REGRESSION.HCC1395_tumor.L002,-67,Cycle,Base Insertion,38369,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-67,Cycle,Base Deletion,38369,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-68,Cycle,Base Substitution,38428,71.77,27.00,27.13,-0.13,After
REGRESSION.HCC1395_tumor.L002,-68,Cycle,Base Insertion,38318,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-68,Cycle,Base Deletion,38318,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-69,Cycle,Base Substitution,38459,54.47,28.00,26.68,1.32,After
REGRESSION.HCC1395_tumor.L002,-69,Cycle,Base Insertion,38353,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-69,Cycle,Base Deletion,38353,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-7,Cycle,Base Substitution,39310,65.08,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L002,-7,Cycle,Base Insertion,39310,0.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-7,Cycle,Base Deletion,39310,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-70,Cycle,Base Substitution,38448,63.16,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L002,-70,Cycle,Base Insertion,38328,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-70,Cycle,Base Deletion,38328,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-71,Cycle,Base Substitution,38410,64.85,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L002,-71,Cycle,Base Insertion,38282,2.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-71,Cycle,Base Deletion,38282,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-72,Cycle,Base Substitution,38396,73.72,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L002,-72,Cycle,Base Insertion,38259,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-72,Cycle,Base Deletion,38259,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-73,Cycle,Base Substitution,38400,63.78,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L002,-73,Cycle,Base Insertion,38271,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-73,Cycle,Base Deletion,38271,4.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-74,Cycle,Base Substitution,38191,64.62,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L002,-74,Cycle,Base Insertion,38059,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-74,Cycle,Base Deletion,38059,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-75,Cycle,Base Substitution,38243,62.45,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L002,-75,Cycle,Base Insertion,38093,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-75,Cycle,Base Deletion,38093,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-76,Cycle,Base Substitution,38123,74.90,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L002,-76,Cycle,Base Insertion,37983,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-76,Cycle,Base Deletion,37983,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-77,Cycle,Base Substitution,38170,64.33,28.00,27.06,0.94,After
REGRESSION.HCC1395_tumor.L002,-77,Cycle,Base Insertion,38015,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-77,Cycle,Base Deletion,38015,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-78,Cycle,Base Substitution,38202,75.20,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L002,-78,Cycle,Base Insertion,38032,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-78,Cycle,Base Deletion,38032,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-79,Cycle,Base Substitution,38150,74.54,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L002,-79,Cycle,Base Insertion,37975,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-79,Cycle,Base Deletion,37975,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-8,Cycle,Base Substitution,39242,60.37,28.00,26.97,1.03,After
REGRESSION.HCC1395_tumor.L002,-8,Cycle,Base Insertion,39242,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-8,Cycle,Base Deletion,39242,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-80,Cycle,Base Substitution,38102,80.20,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L002,-80,Cycle,Base Insertion,37907,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-80,Cycle,Base Deletion,37907,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-81,Cycle,Base Substitution,38006,64.79,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L002,-81,Cycle,Base Insertion,37801,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-81,Cycle,Base Deletion,37801,5.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-82,Cycle,Base Substitution,38081,74.65,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L002,-82,Cycle,Base Insertion,37868,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-82,Cycle,Base Deletion,37868,5.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-83,Cycle,Base Substitution,37932,74.71,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L002,-83,Cycle,Base Insertion,37719,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-83,Cycle,Base Deletion,37719,3.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-84,Cycle,Base Substitution,37845,69.34,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L002,-84,Cycle,Base Insertion,37630,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-84,Cycle,Base Deletion,37630,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-85,Cycle,Base Substitution,37786,59.70,27.00,26.50,0.50,After
REGRESSION.HCC1395_tumor.L002,-85,Cycle,Base Insertion,37562,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-85,Cycle,Base Deletion,37562,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-86,Cycle,Base Substitution,37746,79.72,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L002,-86,Cycle,Base Insertion,37519,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-86,Cycle,Base Deletion,37519,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-87,Cycle,Base Substitution,37790,56.45,28.00,26.64,1.36,After
REGRESSION.HCC1395_tumor.L002,-87,Cycle,Base Insertion,37542,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-87,Cycle,Base Deletion,37542,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-88,Cycle,Base Substitution,37760,69.39,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L002,-88,Cycle,Base Insertion,37511,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-88,Cycle,Base Deletion,37511,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-89,Cycle,Base Substitution,37620,71.52,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L002,-89,Cycle,Base Insertion,37364,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-89,Cycle,Base Deletion,37364,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-9,Cycle,Base Substitution,39326,42.54,29.00,27.77,1.23,After
REGRESSION.HCC1395_tumor.L002,-9,Cycle,Base Insertion,39326,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-9,Cycle,Base Deletion,39326,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-90,Cycle,Base Substitution,37377,88.61,26.00,25.71,0.29,After
REGRESSION.HCC1395_tumor.L002,-90,Cycle,Base Insertion,37122,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-90,Cycle,Base Deletion,37122,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-91,Cycle,Base Substitution,37585,63.42,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L002,-91,Cycle,Base Insertion,37332,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-91,Cycle,Base Deletion,37332,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-92,Cycle,Base Substitution,37534,88.56,26.00,25.97,0.03,After
REGRESSION.HCC1395_tumor.L002,-92,Cycle,Base Insertion,37289,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-92,Cycle,Base Deletion,37289,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-93,Cycle,Base Substitution,37328,76.77,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L002,-93,Cycle,Base Insertion,37074,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-93,Cycle,Base Deletion,37074,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-94,Cycle,Base Substitution,37282,91.36,26.00,25.76,0.24,After
REGRESSION.HCC1395_tumor.L002,-94,Cycle,Base Insertion,37015,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-94,Cycle,Base Deletion,37015,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-95,Cycle,Base Substitution,37138,72.03,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L002,-95,Cycle,Base Insertion,36872,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-95,Cycle,Base Deletion,36872,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-96,Cycle,Base Substitution,37141,62.66,27.00,26.34,0.66,After
REGRESSION.HCC1395_tumor.L002,-96,Cycle,Base Insertion,36863,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-96,Cycle,Base Deletion,36863,3.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-97,Cycle,Base Substitution,37010,68.53,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L002,-97,Cycle,Base Insertion,36738,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-97,Cycle,Base Deletion,36738,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-98,Cycle,Base Substitution,36968,80.73,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L002,-98,Cycle,Base Insertion,36668,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-98,Cycle,Base Deletion,36668,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-99,Cycle,Base Substitution,36849,82.36,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L002,-99,Cycle,Base Insertion,36543,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,-99,Cycle,Base Deletion,36543,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,1,Cycle,Base Substitution,39038,77.46,27.00,25.86,1.14,After
REGRESSION.HCC1395_tumor.L002,10,Cycle,Base Substitution,39399,55.68,28.00,27.40,0.60,After
REGRESSION.HCC1395_tumor.L002,10,Cycle,Base Insertion,39399,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,10,Cycle,Base Deletion,39399,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,100,Cycle,Base Substitution,36864,74.79,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L002,100,Cycle,Base Insertion,36555,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,100,Cycle,Base Deletion,36555,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,101,Cycle,Base Substitution,36736,80.21,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L002,101,Cycle,Base Insertion,36412,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,101,Cycle,Base Deletion,36412,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,102,Cycle,Base Substitution,36837,82.12,26.00,26.54,-0.54,After
REGRESSION.HCC1395_tumor.L002,102,Cycle,Base Insertion,36532,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,102,Cycle,Base Deletion,36532,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,103,Cycle,Base Substitution,36648,59.98,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L002,103,Cycle,Base Insertion,36319,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,103,Cycle,Base Deletion,36319,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,104,Cycle,Base Substitution,36567,69.27,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L002,104,Cycle,Base Insertion,36226,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,104,Cycle,Base Deletion,36226,3.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,105,Cycle,Base Substitution,36517,53.98,28.00,26.49,1.51,After
REGRESSION.HCC1395_tumor.L002,105,Cycle,Base Insertion,36193,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,105,Cycle,Base Deletion,36193,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,106,Cycle,Base Substitution,36422,71.38,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L002,106,Cycle,Base Insertion,36096,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,106,Cycle,Base Deletion,36096,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,107,Cycle,Base Substitution,36390,67.32,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L002,107,Cycle,Base Insertion,36092,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,107,Cycle,Base Deletion,36092,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,108,Cycle,Base Substitution,36192,91.18,26.00,26.47,-0.47,After
REGRESSION.HCC1395_tumor.L002,108,Cycle,Base Insertion,35899,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,108,Cycle,Base Deletion,35899,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,109,Cycle,Base Substitution,36179,76.02,27.00,26.44,0.56,After
REGRESSION.HCC1395_tumor.L002,109,Cycle,Base Insertion,35866,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,109,Cycle,Base Deletion,35866,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,11,Cycle,Base Substitution,39329,40.46,29.00,27.48,1.52,After
REGRESSION.HCC1395_tumor.L002,11,Cycle,Base Insertion,39329,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,11,Cycle,Base Deletion,39329,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,110,Cycle,Base Substitution,36094,72.12,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L002,110,Cycle,Base Insertion,35773,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,110,Cycle,Base Deletion,35773,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,111,Cycle,Base Substitution,36066,75.86,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L002,111,Cycle,Base Insertion,35749,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,111,Cycle,Base Deletion,35749,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,112,Cycle,Base Substitution,35871,77.38,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L002,112,Cycle,Base Insertion,35564,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,112,Cycle,Base Deletion,35564,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,113,Cycle,Base Substitution,35751,67.86,27.00,27.02,-0.02,After
REGRESSION.HCC1395_tumor.L002,113,Cycle,Base Insertion,35458,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,113,Cycle,Base Deletion,35458,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,114,Cycle,Base Substitution,35848,80.43,26.00,26.66,-0.66,After
REGRESSION.HCC1395_tumor.L002,114,Cycle,Base Insertion,35530,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,114,Cycle,Base Deletion,35530,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,115,Cycle,Base Substitution,35602,75.90,27.00,26.36,0.64,After
REGRESSION.HCC1395_tumor.L002,115,Cycle,Base Insertion,35278,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,115,Cycle,Base Deletion,35278,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,116,Cycle,Base Substitution,35485,75.50,27.00,26.30,0.70,After
REGRESSION.HCC1395_tumor.L002,116,Cycle,Base Insertion,35125,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,116,Cycle,Base Deletion,35125,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,117,Cycle,Base Substitution,35522,81.33,26.00,25.78,0.22,After
REGRESSION.HCC1395_tumor.L002,117,Cycle,Base Insertion,35147,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,117,Cycle,Base Deletion,35147,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,118,Cycle,Base Substitution,35438,72.81,27.00,26.41,0.59,After
REGRESSION.HCC1395_tumor.L002,118,Cycle,Base Insertion,35057,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,118,Cycle,Base Deletion,35057,3.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,119,Cycle,Base Substitution,35333,65.53,27.00,26.51,0.49,After
REGRESSION.HCC1395_tumor.L002,119,Cycle,Base Insertion,34959,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,119,Cycle,Base Deletion,34959,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,12,Cycle,Base Substitution,39273,42.48,29.00,27.52,1.48,After
REGRESSION.HCC1395_tumor.L002,12,Cycle,Base Insertion,39273,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,12,Cycle,Base Deletion,39273,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,120,Cycle,Base Substitution,35229,71.55,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L002,120,Cycle,Base Insertion,34868,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,120,Cycle,Base Deletion,34868,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,121,Cycle,Base Substitution,35181,88.61,26.00,26.20,-0.20,After
REGRESSION.HCC1395_tumor.L002,121,Cycle,Base Insertion,34844,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,121,Cycle,Base Deletion,34844,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,122,Cycle,Base Substitution,34980,69.22,27.00,26.45,0.55,After
REGRESSION.HCC1395_tumor.L002,122,Cycle,Base Insertion,34622,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,122,Cycle,Base Deletion,34622,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,123,Cycle,Base Substitution,35093,68.30,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L002,123,Cycle,Base Insertion,34751,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,123,Cycle,Base Deletion,34751,3.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,124,Cycle,Base Substitution,34979,83.16,26.00,25.89,0.11,After
REGRESSION.HCC1395_tumor.L002,124,Cycle,Base Insertion,34622,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,124,Cycle,Base Deletion,34622,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,125,Cycle,Base Substitution,34759,83.12,26.00,26.24,-0.24,After
REGRESSION.HCC1395_tumor.L002,125,Cycle,Base Insertion,34396,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,125,Cycle,Base Deletion,34396,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,126,Cycle,Base Substitution,34713,76.37,27.00,26.29,0.71,After
REGRESSION.HCC1395_tumor.L002,126,Cycle,Base Insertion,34364,0.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,126,Cycle,Base Deletion,34364,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,127,Cycle,Base Substitution,34650,61.12,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L002,127,Cycle,Base Insertion,34277,2.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,127,Cycle,Base Deletion,34277,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,128,Cycle,Base Substitution,34435,73.61,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L002,128,Cycle,Base Insertion,34051,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,128,Cycle,Base Deletion,34051,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,129,Cycle,Base Substitution,34467,64.31,27.00,26.31,0.69,After
REGRESSION.HCC1395_tumor.L002,129,Cycle,Base Insertion,34088,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,129,Cycle,Base Deletion,34088,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,13,Cycle,Base Substitution,39330,43.51,29.00,27.88,1.12,After
REGRESSION.HCC1395_tumor.L002,13,Cycle,Base Insertion,39330,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,13,Cycle,Base Deletion,39330,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,130,Cycle,Base Substitution,34436,70.66,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L002,130,Cycle,Base Insertion,34091,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,130,Cycle,Base Deletion,34091,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,131,Cycle,Base Substitution,34293,84.89,26.00,25.70,0.30,After
REGRESSION.HCC1395_tumor.L002,131,Cycle,Base Insertion,33921,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,131,Cycle,Base Deletion,33921,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,132,Cycle,Base Substitution,34159,80.64,26.00,25.81,0.19,After
REGRESSION.HCC1395_tumor.L002,132,Cycle,Base Insertion,33783,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,132,Cycle,Base Deletion,33783,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,133,Cycle,Base Substitution,34121,78.79,26.00,25.83,0.17,After
REGRESSION.HCC1395_tumor.L002,133,Cycle,Base Insertion,33718,2.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,133,Cycle,Base Deletion,33718,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,134,Cycle,Base Substitution,34161,67.99,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L002,134,Cycle,Base Insertion,33738,0.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,134,Cycle,Base Deletion,33738,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,135,Cycle,Base Substitution,33893,80.26,26.00,26.33,-0.33,After
REGRESSION.HCC1395_tumor.L002,135,Cycle,Base Insertion,33474,0.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,135,Cycle,Base Deletion,33474,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,136,Cycle,Base Substitution,33864,62.48,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L002,136,Cycle,Base Insertion,33452,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,136,Cycle,Base Deletion,33452,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,137,Cycle,Base Substitution,33744,80.88,26.00,26.24,-0.24,After
REGRESSION.HCC1395_tumor.L002,137,Cycle,Base Insertion,33310,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,137,Cycle,Base Deletion,33310,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,138,Cycle,Base Substitution,33624,82.52,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L002,138,Cycle,Base Insertion,33212,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,138,Cycle,Base Deletion,33212,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,139,Cycle,Base Substitution,33614,103.04,25.00,25.47,-0.47,After
REGRESSION.HCC1395_tumor.L002,139,Cycle,Base Insertion,33172,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,139,Cycle,Base Deletion,33172,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,14,Cycle,Base Substitution,39279,39.08,29.00,27.38,1.62,After
REGRESSION.HCC1395_tumor.L002,14,Cycle,Base Insertion,39279,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,14,Cycle,Base Deletion,39279,3.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,140,Cycle,Base Substitution,33402,70.05,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L002,140,Cycle,Base Insertion,32980,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,140,Cycle,Base Deletion,32980,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,141,Cycle,Base Substitution,33269,74.43,26.00,26.41,-0.41,After
REGRESSION.HCC1395_tumor.L002,141,Cycle,Base Insertion,32848,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,141,Cycle,Base Deletion,32848,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,142,Cycle,Base Substitution,33192,84.51,26.00,25.73,0.27,After
REGRESSION.HCC1395_tumor.L002,142,Cycle,Base Insertion,32691,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,142,Cycle,Base Deletion,32691,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,143,Cycle,Base Substitution,33027,75.85,26.00,26.31,-0.31,After
REGRESSION.HCC1395_tumor.L002,143,Cycle,Base Insertion,32518,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,143,Cycle,Base Deletion,32518,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,144,Cycle,Base Substitution,32978,82.14,26.00,26.26,-0.26,After
REGRESSION.HCC1395_tumor.L002,144,Cycle,Base Insertion,32454,0.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,144,Cycle,Base Deletion,32454,0.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,145,Cycle,Base Substitution,32784,72.54,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L002,145,Cycle,Base Insertion,32268,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,145,Cycle,Base Deletion,32268,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,146,Cycle,Base Substitution,32647,71.53,27.00,26.36,0.64,After
REGRESSION.HCC1395_tumor.L002,146,Cycle,Base Insertion,32191,0.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,146,Cycle,Base Deletion,32191,0.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,147,Cycle,Base Substitution,32636,77.27,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L002,148,Cycle,Base Substitution,32537,107.56,25.00,26.37,-1.37,After
REGRESSION.HCC1395_tumor.L002,149,Cycle,Base Substitution,32391,86.40,26.00,26.25,-0.25,After
REGRESSION.HCC1395_tumor.L002,15,Cycle,Base Substitution,39300,37.98,29.00,27.85,1.15,After
REGRESSION.HCC1395_tumor.L002,15,Cycle,Base Insertion,39300,2.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,15,Cycle,Base Deletion,39300,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,150,Cycle,Base Substitution,32207,74.18,26.00,26.44,-0.44,After
REGRESSION.HCC1395_tumor.L002,16,Cycle,Base Substitution,39206,32.13,30.00,28.61,1.39,After
REGRESSION.HCC1395_tumor.L002,16,Cycle,Base Insertion,39206,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,16,Cycle,Base Deletion,39206,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,17,Cycle,Base Substitution,39236,35.83,29.00,28.32,0.68,After
REGRESSION.HCC1395_tumor.L002,17,Cycle,Base Insertion,39236,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,17,Cycle,Base Deletion,39236,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,18,Cycle,Base Substitution,39453,24.03,30.00,28.58,1.42,After
REGRESSION.HCC1395_tumor.L002,18,Cycle,Base Insertion,39452,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,18,Cycle,Base Deletion,39452,5.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,19,Cycle,Base Substitution,39081,33.17,30.00,28.66,1.34,After
REGRESSION.HCC1395_tumor.L002,19,Cycle,Base Insertion,39080,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,19,Cycle,Base Deletion,39080,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,2,Cycle,Base Substitution,39515,90.17,26.00,26.98,-0.98,After
REGRESSION.HCC1395_tumor.L002,20,Cycle,Base Substitution,39184,31.17,30.00,28.39,1.61,After
REGRESSION.HCC1395_tumor.L002,20,Cycle,Base Insertion,39183,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,20,Cycle,Base Deletion,39183,4.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,21,Cycle,Base Substitution,39236,37.23,29.00,28.48,0.52,After
REGRESSION.HCC1395_tumor.L002,21,Cycle,Base Insertion,39235,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,21,Cycle,Base Deletion,39235,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,22,Cycle,Base Substitution,39194,33.12,30.00,28.78,1.22,After
REGRESSION.HCC1395_tumor.L002,22,Cycle,Base Insertion,39194,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,22,Cycle,Base Deletion,39194,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,23,Cycle,Base Substitution,39261,24.00,30.00,28.47,1.53,After
REGRESSION.HCC1395_tumor.L002,23,Cycle,Base Insertion,39261,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,23,Cycle,Base Deletion,39261,4.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,24,Cycle,Base Substitution,39133,28.89,30.00,28.61,1.39,After
REGRESSION.HCC1395_tumor.L002,24,Cycle,Base Insertion,39133,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,24,Cycle,Base Deletion,39133,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,25,Cycle,Base Substitution,39129,32.86,30.00,28.62,1.38,After
REGRESSION.HCC1395_tumor.L002,25,Cycle,Base Insertion,39129,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,25,Cycle,Base Deletion,39129,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,26,Cycle,Base Substitution,39248,41.18,29.00,27.65,1.35,After
REGRESSION.HCC1395_tumor.L002,26,Cycle,Base Insertion,39248,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,26,Cycle,Base Deletion,39248,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,27,Cycle,Base Substitution,39221,38.63,29.00,28.02,0.98,After
REGRESSION.HCC1395_tumor.L002,27,Cycle,Base Insertion,39221,1.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,27,Cycle,Base Deletion,39221,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,28,Cycle,Base Substitution,39118,43.38,29.00,28.15,0.85,After
REGRESSION.HCC1395_tumor.L002,28,Cycle,Base Insertion,39118,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,28,Cycle,Base Deletion,39118,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,29,Cycle,Base Substitution,39096,40.18,29.00,28.08,0.92,After
REGRESSION.HCC1395_tumor.L002,29,Cycle,Base Insertion,39095,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,29,Cycle,Base Deletion,39095,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,3,Cycle,Base Substitution,39719,107.25,26.00,26.85,-0.85,After
REGRESSION.HCC1395_tumor.L002,30,Cycle,Base Substitution,39111,36.51,29.00,27.83,1.17,After
REGRESSION.HCC1395_tumor.L002,30,Cycle,Base Insertion,39109,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,30,Cycle,Base Deletion,39109,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,31,Cycle,Base Substitution,39174,35.68,29.00,27.82,1.18,After
REGRESSION.HCC1395_tumor.L002,31,Cycle,Base Insertion,39172,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,31,Cycle,Base Deletion,39172,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,32,Cycle,Base Substitution,39171,61.94,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L002,32,Cycle,Base Insertion,39168,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,32,Cycle,Base Deletion,39168,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,33,Cycle,Base Substitution,39205,40.20,29.00,27.89,1.11,After
REGRESSION.HCC1395_tumor.L002,33,Cycle,Base Insertion,39201,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,33,Cycle,Base Deletion,39201,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,34,Cycle,Base Substitution,39201,46.85,28.00,27.82,0.18,After
REGRESSION.HCC1395_tumor.L002,34,Cycle,Base Insertion,39198,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,34,Cycle,Base Deletion,39198,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,35,Cycle,Base Substitution,39170,49.65,28.00,27.60,0.40,After
REGRESSION.HCC1395_tumor.L002,35,Cycle,Base Insertion,39168,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,35,Cycle,Base Deletion,39168,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,36,Cycle,Base Substitution,38997,59.17,28.00,27.87,0.13,After
REGRESSION.HCC1395_tumor.L002,36,Cycle,Base Insertion,38994,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,36,Cycle,Base Deletion,38994,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,37,Cycle,Base Substitution,39163,45.84,29.00,28.46,0.54,After
REGRESSION.HCC1395_tumor.L002,37,Cycle,Base Insertion,39161,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,37,Cycle,Base Deletion,39161,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,38,Cycle,Base Substitution,39029,34.21,29.00,27.75,1.25,After
REGRESSION.HCC1395_tumor.L002,38,Cycle,Base Insertion,39027,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,38,Cycle,Base Deletion,39027,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,39,Cycle,Base Substitution,39087,44.66,29.00,28.01,0.99,After
REGRESSION.HCC1395_tumor.L002,39,Cycle,Base Insertion,39085,2.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,39,Cycle,Base Deletion,39085,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,4,Cycle,Base Substitution,39478,61.07,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L002,40,Cycle,Base Substitution,39185,44.36,29.00,27.85,1.15,After
REGRESSION.HCC1395_tumor.L002,40,Cycle,Base Insertion,39182,1.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,40,Cycle,Base Deletion,39182,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,41,Cycle,Base Substitution,39032,57.96,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L002,41,Cycle,Base Insertion,39029,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,41,Cycle,Base Deletion,39029,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,42,Cycle,Base Substitution,39118,33.05,29.00,27.68,1.32,After
REGRESSION.HCC1395_tumor.L002,42,Cycle,Base Insertion,39114,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,42,Cycle,Base Deletion,39114,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,43,Cycle,Base Substitution,38883,51.12,28.00,27.59,0.41,After
REGRESSION.HCC1395_tumor.L002,43,Cycle,Base Insertion,38875,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,43,Cycle,Base Deletion,38875,3.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,44,Cycle,Base Substitution,39051,43.33,29.00,27.90,1.10,After
REGRESSION.HCC1395_tumor.L002,44,Cycle,Base Insertion,39041,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,44,Cycle,Base Deletion,39041,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,45,Cycle,Base Substitution,39059,51.14,28.00,27.60,0.40,After
REGRESSION.HCC1395_tumor.L002,45,Cycle,Base Insertion,39046,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,45,Cycle,Base Deletion,39046,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,46,Cycle,Base Substitution,39142,38.06,29.00,27.53,1.47,After
REGRESSION.HCC1395_tumor.L002,46,Cycle,Base Insertion,39129,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,46,Cycle,Base Deletion,39129,5.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,47,Cycle,Base Substitution,39042,56.04,28.00,27.58,0.42,After
REGRESSION.HCC1395_tumor.L002,47,Cycle,Base Insertion,39031,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,47,Cycle,Base Deletion,39031,4.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,48,Cycle,Base Substitution,38908,40.08,29.00,27.62,1.38,After
REGRESSION.HCC1395_tumor.L002,48,Cycle,Base Insertion,38895,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,48,Cycle,Base Deletion,38895,4.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,49,Cycle,Base Substitution,38871,39.53,29.00,27.66,1.34,After
REGRESSION.HCC1395_tumor.L002,49,Cycle,Base Insertion,38851,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,49,Cycle,Base Deletion,38851,5.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,5,Cycle,Base Substitution,39574,44.39,29.00,27.63,1.37,After
REGRESSION.HCC1395_tumor.L002,5,Cycle,Base Insertion,39574,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,5,Cycle,Base Deletion,39574,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,50,Cycle,Base Substitution,38918,45.80,28.00,27.79,0.21,After
REGRESSION.HCC1395_tumor.L002,50,Cycle,Base Insertion,38895,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,50,Cycle,Base Deletion,38895,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,51,Cycle,Base Substitution,38943,56.22,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L002,51,Cycle,Base Insertion,38912,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,51,Cycle,Base Deletion,38912,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,52,Cycle,Base Substitution,38902,52.49,28.00,27.54,0.46,After
REGRESSION.HCC1395_tumor.L002,52,Cycle,Base Insertion,38872,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,52,Cycle,Base Deletion,38872,5.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,53,Cycle,Base Substitution,38978,56.39,28.00,27.64,0.36,After
REGRESSION.HCC1395_tumor.L002,53,Cycle,Base Insertion,38943,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,53,Cycle,Base Deletion,38943,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,54,Cycle,Base Substitution,39033,61.08,28.00,27.90,0.10,After
REGRESSION.HCC1395_tumor.L002,54,Cycle,Base Insertion,39002,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,54,Cycle,Base Deletion,39002,4.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,55,Cycle,Base Substitution,38876,44.48,29.00,27.83,1.17,After
REGRESSION.HCC1395_tumor.L002,55,Cycle,Base Insertion,38841,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,55,Cycle,Base Deletion,38841,4.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,56,Cycle,Base Substitution,38772,51.83,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L002,56,Cycle,Base Insertion,38735,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,56,Cycle,Base Deletion,38735,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,57,Cycle,Base Substitution,38716,61.25,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L002,57,Cycle,Base Insertion,38666,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,57,Cycle,Base Deletion,38666,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,58,Cycle,Base Substitution,38828,42.44,29.00,27.45,1.55,After
REGRESSION.HCC1395_tumor.L002,58,Cycle,Base Insertion,38760,2.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,58,Cycle,Base Deletion,38760,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,59,Cycle,Base Substitution,38772,42.49,29.00,27.50,1.50,After
REGRESSION.HCC1395_tumor.L002,59,Cycle,Base Insertion,38703,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,59,Cycle,Base Deletion,38703,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,6,Cycle,Base Substitution,39450,44.95,29.00,28.12,0.88,After
REGRESSION.HCC1395_tumor.L002,6,Cycle,Base Insertion,39450,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,6,Cycle,Base Deletion,39450,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,60,Cycle,Base Substitution,38799,42.17,29.00,27.81,1.19,After
REGRESSION.HCC1395_tumor.L002,60,Cycle,Base Insertion,38724,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,60,Cycle,Base Deletion,38724,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,61,Cycle,Base Substitution,38688,47.14,28.00,27.61,0.39,After
REGRESSION.HCC1395_tumor.L002,61,Cycle,Base Insertion,38608,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,61,Cycle,Base Deletion,38608,5.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,62,Cycle,Base Substitution,38614,42.32,29.00,27.38,1.62,After
REGRESSION.HCC1395_tumor.L002,62,Cycle,Base Insertion,38532,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,62,Cycle,Base Deletion,38532,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,63,Cycle,Base Substitution,38686,60.87,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L002,63,Cycle,Base Insertion,38612,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,63,Cycle,Base Deletion,38612,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,64,Cycle,Base Substitution,38673,57.17,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L002,64,Cycle,Base Insertion,38593,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,64,Cycle,Base Deletion,38593,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,65,Cycle,Base Substitution,38648,47.93,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L002,65,Cycle,Base Insertion,38553,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,65,Cycle,Base Deletion,38553,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,66,Cycle,Base Substitution,38673,42.27,29.00,27.44,1.56,After
REGRESSION.HCC1395_tumor.L002,66,Cycle,Base Insertion,38581,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,66,Cycle,Base Deletion,38581,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,67,Cycle,Base Substitution,38636,52.96,28.00,27.34,0.66,After
REGRESSION.HCC1395_tumor.L002,67,Cycle,Base Insertion,38534,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,67,Cycle,Base Deletion,38534,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,68,Cycle,Base Substitution,38558,60.14,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L002,68,Cycle,Base Insertion,38447,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,68,Cycle,Base Deletion,38447,5.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,69,Cycle,Base Substitution,38503,46.91,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L002,69,Cycle,Base Insertion,38391,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,69,Cycle,Base Deletion,38391,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,7,Cycle,Base Substitution,39398,48.16,28.00,27.29,0.71,After
REGRESSION.HCC1395_tumor.L002,7,Cycle,Base Insertion,39398,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,7,Cycle,Base Deletion,39398,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,70,Cycle,Base Substitution,38592,49.53,28.00,27.40,0.60,After
REGRESSION.HCC1395_tumor.L002,70,Cycle,Base Insertion,38483,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,70,Cycle,Base Deletion,38483,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,71,Cycle,Base Substitution,38510,59.44,28.00,27.37,0.63,After
REGRESSION.HCC1395_tumor.L002,71,Cycle,Base Insertion,38390,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,71,Cycle,Base Deletion,38390,5.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,72,Cycle,Base Substitution,38462,57.97,28.00,27.31,0.69,After
REGRESSION.HCC1395_tumor.L002,72,Cycle,Base Insertion,38331,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,72,Cycle,Base Deletion,38331,4.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,73,Cycle,Base Substitution,38490,67.63,27.00,27.13,-0.13,After
REGRESSION.HCC1395_tumor.L002,73,Cycle,Base Insertion,38361,2.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,73,Cycle,Base Deletion,38361,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,74,Cycle,Base Substitution,38347,69.05,27.00,27.10,-0.10,After
REGRESSION.HCC1395_tumor.L002,74,Cycle,Base Insertion,38210,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,74,Cycle,Base Deletion,38210,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,75,Cycle,Base Substitution,38408,51.28,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L002,75,Cycle,Base Insertion,38252,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,75,Cycle,Base Deletion,38252,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,76,Cycle,Base Substitution,38331,55.18,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L002,76,Cycle,Base Insertion,38190,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,76,Cycle,Base Deletion,38190,4.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,77,Cycle,Base Substitution,38189,71.64,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L002,77,Cycle,Base Insertion,38033,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,77,Cycle,Base Deletion,38033,4.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,78,Cycle,Base Substitution,38165,61.14,28.00,27.13,0.87,After
REGRESSION.HCC1395_tumor.L002,78,Cycle,Base Insertion,37993,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,78,Cycle,Base Deletion,37993,4.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,79,Cycle,Base Substitution,38156,62.68,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L002,79,Cycle,Base Insertion,37981,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,79,Cycle,Base Deletion,37981,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,8,Cycle,Base Substitution,39420,35.00,29.00,28.07,0.93,After
REGRESSION.HCC1395_tumor.L002,8,Cycle,Base Insertion,39420,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,8,Cycle,Base Deletion,39420,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,80,Cycle,Base Substitution,38050,63.53,28.00,27.15,0.85,After
REGRESSION.HCC1395_tumor.L002,80,Cycle,Base Insertion,37856,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,80,Cycle,Base Deletion,37856,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,81,Cycle,Base Substitution,38049,63.51,28.00,27.14,0.86,After
REGRESSION.HCC1395_tumor.L002,81,Cycle,Base Insertion,37836,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,81,Cycle,Base Deletion,37836,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,82,Cycle,Base Substitution,37946,67.76,27.00,27.11,-0.11,After
REGRESSION.HCC1395_tumor.L002,82,Cycle,Base Insertion,37744,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,82,Cycle,Base Deletion,37744,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,83,Cycle,Base Substitution,37918,51.41,28.00,27.05,0.95,After
REGRESSION.HCC1395_tumor.L002,83,Cycle,Base Insertion,37711,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,83,Cycle,Base Deletion,37711,4.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,84,Cycle,Base Substitution,37930,57.83,28.00,27.04,0.96,After
REGRESSION.HCC1395_tumor.L002,84,Cycle,Base Insertion,37730,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,84,Cycle,Base Deletion,37730,4.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,85,Cycle,Base Substitution,37828,67.93,27.00,26.91,0.09,After
REGRESSION.HCC1395_tumor.L002,85,Cycle,Base Insertion,37610,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,85,Cycle,Base Deletion,37610,5.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,86,Cycle,Base Substitution,37781,66.84,27.00,27.05,-0.05,After
REGRESSION.HCC1395_tumor.L002,86,Cycle,Base Insertion,37557,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,86,Cycle,Base Deletion,37557,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,87,Cycle,Base Substitution,37862,64.11,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L002,87,Cycle,Base Insertion,37625,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,87,Cycle,Base Deletion,37625,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,88,Cycle,Base Substitution,37679,52.64,28.00,27.32,0.68,After
REGRESSION.HCC1395_tumor.L002,88,Cycle,Base Insertion,37432,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,88,Cycle,Base Deletion,37432,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,89,Cycle,Base Substitution,37597,62.47,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L002,89,Cycle,Base Insertion,37344,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,89,Cycle,Base Deletion,37344,4.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,9,Cycle,Base Substitution,39323,30.22,30.00,28.07,1.93,After
REGRESSION.HCC1395_tumor.L002,9,Cycle,Base Insertion,39323,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,9,Cycle,Base Deletion,39323,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,90,Cycle,Base Substitution,37566,63.32,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L002,90,Cycle,Base Insertion,37312,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,90,Cycle,Base Deletion,37312,5.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,91,Cycle,Base Substitution,37401,68.14,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L002,91,Cycle,Base Insertion,37163,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,91,Cycle,Base Deletion,37163,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,92,Cycle,Base Substitution,37389,63.45,28.00,27.07,0.93,After
REGRESSION.HCC1395_tumor.L002,92,Cycle,Base Insertion,37155,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,92,Cycle,Base Deletion,37155,4.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,93,Cycle,Base Substitution,37448,72.54,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L002,93,Cycle,Base Insertion,37196,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,93,Cycle,Base Deletion,37196,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,94,Cycle,Base Substitution,37341,78.48,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L002,94,Cycle,Base Insertion,37089,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,94,Cycle,Base Deletion,37089,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,95,Cycle,Base Substitution,37227,59.06,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L002,95,Cycle,Base Insertion,36978,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,95,Cycle,Base Deletion,36978,4.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,96,Cycle,Base Substitution,37193,67.44,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L002,96,Cycle,Base Insertion,36914,2.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,96,Cycle,Base Deletion,36914,4.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,97,Cycle,Base Substitution,37114,58.18,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L002,97,Cycle,Base Insertion,36849,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,97,Cycle,Base Deletion,36849,4.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,98,Cycle,Base Substitution,37011,59.92,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L002,98,Cycle,Base Insertion,36720,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,98,Cycle,Base Deletion,36720,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,99,Cycle,Base Substitution,36891,64.18,27.00,26.96,0.04,After
REGRESSION.HCC1395_tumor.L002,99,Cycle,Base Insertion,36588,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,99,Cycle,Base Deletion,36588,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L002,10,QualityScore,Base Substitution,15320,1511.30,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L002,11,QualityScore,Base Substitution,15579,1124.36,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L002,12,QualityScore,Base Substitution,20833,1232.85,12.00,12.00,0.00,After
REGRESSION.HCC1395_tumor.L002,13,QualityScore,Base Substitution,7162,77.60,17.00,13.00,4.00,After
REGRESSION.HCC1395_tumor.L002,14,QualityScore,Base Substitution,25028,351.16,18.00,14.00,4.00,After
REGRESSION.HCC1395_tumor.L002,15,QualityScore,Base Substitution,17892,13.85,21.00,15.00,6.00,After
REGRESSION.HCC1395_tumor.L002,16,QualityScore,Base Substitution,14640,3.91,22.00,16.00,6.00,After
REGRESSION.HCC1395_tumor.L002,22,QualityScore,Base Substitution,8173,2.18,24.00,22.00,2.00,After
REGRESSION.HCC1395_tumor.L002,23,QualityScore,Base Substitution,101691,667.03,22.00,23.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,24,QualityScore,Base Substitution,109499,393.31,24.00,24.00,0.00,After
REGRESSION.HCC1395_tumor.L002,25,QualityScore,Base Substitution,128640,206.44,27.00,25.00,2.00,After
REGRESSION.HCC1395_tumor.L002,28,QualityScore,Base Substitution,7958,0.09,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L002,29,QualityScore,Base Substitution,69121,117.35,28.00,29.00,-1.00,After
REGRESSION.HCC1395_tumor.L002,30,QualityScore,Base Substitution,2520772,1549.46,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L002,31,QualityScore,Base Substitution,2900795,1296.10,33.00,31.00,2.00,After
REGRESSION.HCC1395_tumor.L002,32,QualityScore,Base Substitution,4705920,1116.97,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L002,33,QualityScore,Base Substitution,419080,78.76,35.00,33.00,2.00,After
REGRESSION.HCC1395_tumor.L002,45,QualityScore,Base Insertion,11155742,526.57,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L002,45,QualityScore,Base Deletion,11155742,992.82,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L002,7,QualityScore,Base Substitution,562,124.05,7.00,7.00,0.00,After
REGRESSION.HCC1395_tumor.L002,8,QualityScore,Base Substitution,11607,1963.35,8.00,8.00,0.00,After
REGRESSION.HCC1395_tumor.L002,9,QualityScore,Base Substitution,55470,7346.49,9.00,9.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AA,Context,Base Substitution,830015,1886.02,26.00,24.93,1.07,After
REGRESSION.HCC1395_tumor.L003,AAA,Context,Base Insertion,294437,61.67,42.00,45.00,-3.00,After
REGRESSION.HCC1395_tumor.L003,AAA,Context,Base Deletion,294437,185.61,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L003,AAC,Context,Base Insertion,131357,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AAC,Context,Base Deletion,131357,9.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AAG,Context,Base Insertion,198000,7.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AAG,Context,Base Deletion,198000,7.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AAT,Context,Base Insertion,172200,0.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AAT,Context,Base Deletion,172200,14.76,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,AC,Context,Base Substitution,529837,1814.79,25.00,24.72,0.28,After
REGRESSION.HCC1395_tumor.L003,ACA,Context,Base Insertion,204285,16.98,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,ACA,Context,Base Deletion,204285,36.76,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L003,ACC,Context,Base Insertion,146154,10.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ACC,Context,Base Deletion,146154,5.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ACG,Context,Base Insertion,30760,0.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ACG,Context,Base Deletion,30760,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ACT,Context,Base Insertion,157230,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ACT,Context,Base Deletion,157230,11.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AG,Context,Base Substitution,798658,623.03,31.00,28.66,2.34,After
REGRESSION.HCC1395_tumor.L003,AGA,Context,Base Insertion,221496,5.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AGA,Context,Base Deletion,221496,11.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AGC,Context,Base Insertion,192378,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AGC,Context,Base Deletion,192378,5.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AGG,Context,Base Insertion,227410,12.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AGG,Context,Base Deletion,227410,8.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AGT,Context,Base Insertion,153841,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AGT,Context,Base Deletion,153841,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,AT,Context,Base Substitution,599449,626.26,30.00,27.54,2.46,After
REGRESSION.HCC1395_tumor.L003,ATA,Context,Base Insertion,134243,8.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ATA,Context,Base Deletion,134243,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ATC,Context,Base Insertion,120439,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ATC,Context,Base Deletion,120439,8.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ATG,Context,Base Insertion,173808,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ATG,Context,Base Deletion,173808,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ATT,Context,Base Insertion,181306,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,ATT,Context,Base Deletion,181306,9.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CA,Context,Base Substitution,853460,1832.72,27.00,26.34,0.66,After
REGRESSION.HCC1395_tumor.L003,CAA,Context,Base Insertion,170570,8.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CAA,Context,Base Deletion,170570,12.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CAC,Context,Base Insertion,183584,21.60,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,CAC,Context,Base Deletion,183584,35.79,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L003,CAG,Context,Base Insertion,291397,9.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CAG,Context,Base Deletion,291397,11.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CAT,Context,Base Insertion,170052,7.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CAT,Context,Base Deletion,170052,7.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CC,Context,Base Substitution,763422,2440.09,25.00,24.57,0.43,After
REGRESSION.HCC1395_tumor.L003,CCA,Context,Base Insertion,244335,7.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CCA,Context,Base Deletion,244335,8.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CCC,Context,Base Insertion,211971,14.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CCC,Context,Base Deletion,211971,18.73,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,CCG,Context,Base Insertion,54011,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CCG,Context,Base Deletion,54011,6.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CCT,Context,Base Insertion,242654,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CCT,Context,Base Deletion,242654,11.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CG,Context,Base Substitution,161584,514.61,25.00,24.72,0.28,After
REGRESSION.HCC1395_tumor.L003,CGA,Context,Base Insertion,56435,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CGA,Context,Base Deletion,56435,0.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CGC,Context,Base Insertion,80444,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CGC,Context,Base Deletion,80444,5.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CGG,Context,Base Insertion,98622,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CGG,Context,Base Deletion,98622,11.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CGT,Context,Base Insertion,62481,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CGT,Context,Base Deletion,62481,3.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CT,Context,Base Substitution,838043,366.30,33.00,29.56,3.44,After
REGRESSION.HCC1395_tumor.L003,CTA,Context,Base Insertion,96706,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CTA,Context,Base Deletion,96706,7.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CTC,Context,Base Insertion,201653,8.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CTC,Context,Base Deletion,201653,17.82,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,CTG,Context,Base Insertion,291422,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CTG,Context,Base Deletion,291422,14.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CTT,Context,Base Insertion,209943,10.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,CTT,Context,Base Deletion,209943,9.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GA,Context,Base Substitution,699237,997.52,28.00,26.53,1.47,After
REGRESSION.HCC1395_tumor.L003,GAA,Context,Base Insertion,208454,6.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GAA,Context,Base Deletion,208454,8.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GAC,Context,Base Insertion,117756,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GAC,Context,Base Deletion,117756,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GAG,Context,Base Insertion,206323,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GAG,Context,Base Deletion,206323,12.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GAT,Context,Base Insertion,124909,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GAT,Context,Base Deletion,124909,5.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GC,Context,Base Substitution,662504,1474.41,27.00,25.89,1.11,After
REGRESSION.HCC1395_tumor.L003,GCA,Context,Base Insertion,203822,5.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GCA,Context,Base Deletion,203822,7.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GCC,Context,Base Insertion,199092,3.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GCC,Context,Base Deletion,199092,9.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GCG,Context,Base Insertion,49199,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GCG,Context,Base Deletion,49199,7.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GCT,Context,Base Insertion,209447,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GCT,Context,Base Deletion,209447,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GG,Context,Base Substitution,790411,772.63,30.00,27.63,2.37,After
REGRESSION.HCC1395_tumor.L003,GGA,Context,Base Insertion,213714,22.99,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,GGA,Context,Base Deletion,213714,14.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GGC,Context,Base Insertion,196981,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GGC,Context,Base Deletion,196981,9.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GGG,Context,Base Insertion,218744,14.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GGG,Context,Base Deletion,218744,33.87,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,GGT,Context,Base Insertion,158324,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GGT,Context,Base Deletion,158324,5.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GT,Context,Base Substitution,588011,1072.05,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L003,GTA,Context,Base Insertion,101708,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GTA,Context,Base Deletion,101708,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GTC,Context,Base Insertion,126274,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GTC,Context,Base Deletion,126274,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GTG,Context,Base Insertion,198920,12.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GTG,Context,Base Deletion,198920,34.02,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L003,GTT,Context,Base Insertion,148567,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,GTT,Context,Base Deletion,148567,14.64,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,TA,Context,Base Substitution,483554,1177.89,26.00,25.01,0.99,After
REGRESSION.HCC1395_tumor.L003,TAA,Context,Base Insertion,149452,9.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TAA,Context,Base Deletion,149452,14.39,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,TAC,Context,Base Insertion,93808,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TAC,Context,Base Deletion,93808,4.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TAG,Context,Base Insertion,96871,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TAG,Context,Base Deletion,96871,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TAT,Context,Base Insertion,127891,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TAT,Context,Base Deletion,127891,4.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TC,Context,Base Substitution,645667,1618.44,26.00,26.08,-0.08,After
REGRESSION.HCC1395_tumor.L003,TCA,Context,Base Insertion,194416,6.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TCA,Context,Base Deletion,194416,13.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TCC,Context,Base Insertion,201084,32.38,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,TCC,Context,Base Deletion,201084,11.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TCG,Context,Base Insertion,26395,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TCG,Context,Base Deletion,26395,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TCT,Context,Base Insertion,222978,5.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TCT,Context,Base Deletion,222978,12.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TG,Context,Base Substitution,840148,365.69,33.00,29.35,3.65,After
REGRESSION.HCC1395_tumor.L003,TGA,Context,Base Insertion,202185,4.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TGA,Context,Base Deletion,202185,6.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TGC,Context,Base Insertion,188532,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TGC,Context,Base Deletion,188532,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TGG,Context,Base Insertion,239925,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TGG,Context,Base Deletion,239925,8.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TGT,Context,Base Insertion,209491,13.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TGT,Context,Base Deletion,209491,36.84,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L003,TT,Context,Base Substitution,839713,921.15,30.00,28.18,1.82,After
REGRESSION.HCC1395_tumor.L003,TTA,Context,Base Insertion,147288,5.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TTA,Context,Base Deletion,147288,7.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TTC,Context,Base Insertion,193404,6.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TTC,Context,Base Deletion,193404,11.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TTG,Context,Base Insertion,170028,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TTG,Context,Base Deletion,170028,8.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,TTT,Context,Base Insertion,294229,62.75,42.00,45.00,-3.00,After
REGRESSION.HCC1395_tumor.L003,TTT,Context,Base Deletion,294229,166.00,38.00,45.00,-7.00,After
REGRESSION.HCC1395_tumor.L003,-1,Cycle,Base Substitution,38382,137.75,24.00,24.13,-0.13,After
REGRESSION.HCC1395_tumor.L003,-10,Cycle,Base Substitution,38641,50.24,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L003,-10,Cycle,Base Insertion,38641,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-10,Cycle,Base Deletion,38641,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-100,Cycle,Base Substitution,36302,90.84,26.00,26.02,-0.02,After
REGRESSION.HCC1395_tumor.L003,-100,Cycle,Base Insertion,36003,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-100,Cycle,Base Deletion,36003,5.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-101,Cycle,Base Substitution,36277,96.97,26.00,25.61,0.39,After
REGRESSION.HCC1395_tumor.L003,-101,Cycle,Base Insertion,35971,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-101,Cycle,Base Deletion,35971,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-102,Cycle,Base Substitution,36110,78.77,27.00,26.36,0.64,After
REGRESSION.HCC1395_tumor.L003,-102,Cycle,Base Insertion,35811,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-102,Cycle,Base Deletion,35811,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-103,Cycle,Base Substitution,36087,68.28,27.00,26.34,0.66,After
REGRESSION.HCC1395_tumor.L003,-103,Cycle,Base Insertion,35781,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-103,Cycle,Base Deletion,35781,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-104,Cycle,Base Substitution,35959,73.00,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L003,-104,Cycle,Base Insertion,35659,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-104,Cycle,Base Deletion,35659,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-105,Cycle,Base Substitution,35836,91.70,26.00,26.35,-0.35,After
REGRESSION.HCC1395_tumor.L003,-105,Cycle,Base Insertion,35516,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-105,Cycle,Base Deletion,35516,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-106,Cycle,Base Substitution,35788,92.67,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L003,-106,Cycle,Base Insertion,35470,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-106,Cycle,Base Deletion,35470,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-107,Cycle,Base Substitution,35762,79.65,26.00,26.22,-0.22,After
REGRESSION.HCC1395_tumor.L003,-107,Cycle,Base Insertion,35447,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-107,Cycle,Base Deletion,35447,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-108,Cycle,Base Substitution,35694,79.69,26.00,26.35,-0.35,After
REGRESSION.HCC1395_tumor.L003,-108,Cycle,Base Insertion,35364,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-108,Cycle,Base Deletion,35364,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-109,Cycle,Base Substitution,35664,86.40,26.00,25.72,0.28,After
REGRESSION.HCC1395_tumor.L003,-109,Cycle,Base Insertion,35336,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-109,Cycle,Base Deletion,35336,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-11,Cycle,Base Substitution,38739,40.73,29.00,27.83,1.17,After
REGRESSION.HCC1395_tumor.L003,-11,Cycle,Base Insertion,38739,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-11,Cycle,Base Deletion,38739,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-110,Cycle,Base Substitution,35554,95.04,26.00,25.63,0.37,After
REGRESSION.HCC1395_tumor.L003,-110,Cycle,Base Insertion,35228,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-110,Cycle,Base Deletion,35228,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-111,Cycle,Base Substitution,35393,89.10,26.00,25.73,0.27,After
REGRESSION.HCC1395_tumor.L003,-111,Cycle,Base Insertion,35069,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-111,Cycle,Base Deletion,35069,4.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-112,Cycle,Base Substitution,35343,76.40,27.00,26.21,0.79,After
REGRESSION.HCC1395_tumor.L003,-112,Cycle,Base Insertion,35019,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-112,Cycle,Base Deletion,35019,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-113,Cycle,Base Substitution,35305,82.05,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L003,-113,Cycle,Base Insertion,34975,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-113,Cycle,Base Deletion,34975,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-114,Cycle,Base Substitution,35200,88.36,26.00,26.52,-0.52,After
REGRESSION.HCC1395_tumor.L003,-114,Cycle,Base Insertion,34874,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-114,Cycle,Base Deletion,34874,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-115,Cycle,Base Substitution,34992,87.12,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L003,-115,Cycle,Base Insertion,34639,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-115,Cycle,Base Deletion,34639,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-116,Cycle,Base Substitution,35043,84.68,26.00,25.56,0.44,After
REGRESSION.HCC1395_tumor.L003,-116,Cycle,Base Insertion,34701,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-116,Cycle,Base Deletion,34701,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-117,Cycle,Base Substitution,34776,96.47,26.00,26.13,-0.13,After
REGRESSION.HCC1395_tumor.L003,-117,Cycle,Base Insertion,34429,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-117,Cycle,Base Deletion,34429,3.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-118,Cycle,Base Substitution,34706,77.21,26.00,26.53,-0.53,After
REGRESSION.HCC1395_tumor.L003,-118,Cycle,Base Insertion,34347,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-118,Cycle,Base Deletion,34347,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-119,Cycle,Base Substitution,34654,87.10,26.00,26.50,-0.50,After
REGRESSION.HCC1395_tumor.L003,-119,Cycle,Base Insertion,34304,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-119,Cycle,Base Deletion,34304,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-12,Cycle,Base Substitution,38828,61.86,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L003,-12,Cycle,Base Insertion,38828,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-12,Cycle,Base Deletion,38828,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-120,Cycle,Base Substitution,34673,79.88,26.00,26.29,-0.29,After
REGRESSION.HCC1395_tumor.L003,-120,Cycle,Base Insertion,34330,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-120,Cycle,Base Deletion,34330,4.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-121,Cycle,Base Substitution,34630,79.63,26.00,26.12,-0.12,After
REGRESSION.HCC1395_tumor.L003,-121,Cycle,Base Insertion,34265,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-121,Cycle,Base Deletion,34265,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-122,Cycle,Base Substitution,34531,98.03,26.00,26.23,-0.23,After
REGRESSION.HCC1395_tumor.L003,-122,Cycle,Base Insertion,34168,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-122,Cycle,Base Deletion,34168,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-123,Cycle,Base Substitution,34284,67.31,27.00,25.99,1.01,After
REGRESSION.HCC1395_tumor.L003,-123,Cycle,Base Insertion,33912,0.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-123,Cycle,Base Deletion,33912,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-124,Cycle,Base Substitution,34154,81.20,26.00,25.99,0.01,After
REGRESSION.HCC1395_tumor.L003,-124,Cycle,Base Insertion,33773,0.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-124,Cycle,Base Deletion,33773,3.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-125,Cycle,Base Substitution,34295,79.06,26.00,26.03,-0.03,After
REGRESSION.HCC1395_tumor.L003,-125,Cycle,Base Insertion,33901,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-125,Cycle,Base Deletion,33901,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-126,Cycle,Base Substitution,34183,71.53,27.00,26.29,0.71,After
REGRESSION.HCC1395_tumor.L003,-126,Cycle,Base Insertion,33780,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-126,Cycle,Base Deletion,33780,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-127,Cycle,Base Substitution,34085,54.31,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L003,-127,Cycle,Base Insertion,33687,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-127,Cycle,Base Deletion,33687,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-128,Cycle,Base Substitution,33940,89.36,26.00,25.54,0.46,After
REGRESSION.HCC1395_tumor.L003,-128,Cycle,Base Insertion,33548,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-128,Cycle,Base Deletion,33548,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-129,Cycle,Base Substitution,33848,87.70,26.00,26.02,-0.02,After
REGRESSION.HCC1395_tumor.L003,-129,Cycle,Base Insertion,33450,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-129,Cycle,Base Deletion,33450,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-13,Cycle,Base Substitution,38795,44.66,29.00,27.72,1.28,After
REGRESSION.HCC1395_tumor.L003,-13,Cycle,Base Insertion,38795,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-13,Cycle,Base Deletion,38795,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-130,Cycle,Base Substitution,33820,74.27,27.00,26.16,0.84,After
REGRESSION.HCC1395_tumor.L003,-130,Cycle,Base Insertion,33427,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-130,Cycle,Base Deletion,33427,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-131,Cycle,Base Substitution,33589,74.23,26.00,25.92,0.08,After
REGRESSION.HCC1395_tumor.L003,-131,Cycle,Base Insertion,33209,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-131,Cycle,Base Deletion,33209,2.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-132,Cycle,Base Substitution,33671,71.26,27.00,26.18,0.82,After
REGRESSION.HCC1395_tumor.L003,-132,Cycle,Base Insertion,33251,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-132,Cycle,Base Deletion,33251,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-133,Cycle,Base Substitution,33502,94.71,26.00,26.04,-0.04,After
REGRESSION.HCC1395_tumor.L003,-133,Cycle,Base Insertion,33066,2.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-133,Cycle,Base Deletion,33066,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-134,Cycle,Base Substitution,33336,69.57,27.00,26.21,0.79,After
REGRESSION.HCC1395_tumor.L003,-134,Cycle,Base Insertion,32899,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-134,Cycle,Base Deletion,32899,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-135,Cycle,Base Substitution,33252,87.16,26.00,25.63,0.37,After
REGRESSION.HCC1395_tumor.L003,-135,Cycle,Base Insertion,32820,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-135,Cycle,Base Deletion,32820,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-136,Cycle,Base Substitution,33223,73.87,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L003,-136,Cycle,Base Insertion,32759,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-136,Cycle,Base Deletion,32759,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-137,Cycle,Base Substitution,33087,93.51,25.00,25.60,-0.60,After
REGRESSION.HCC1395_tumor.L003,-137,Cycle,Base Insertion,32626,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-137,Cycle,Base Deletion,32626,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-138,Cycle,Base Substitution,32974,70.70,27.00,26.15,0.85,After
REGRESSION.HCC1395_tumor.L003,-138,Cycle,Base Insertion,32489,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-138,Cycle,Base Deletion,32489,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-139,Cycle,Base Substitution,32779,61.64,27.00,26.25,0.75,After
REGRESSION.HCC1395_tumor.L003,-139,Cycle,Base Insertion,32269,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-139,Cycle,Base Deletion,32269,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-14,Cycle,Base Substitution,38752,47.69,28.00,27.73,0.27,After
REGRESSION.HCC1395_tumor.L003,-14,Cycle,Base Insertion,38752,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-14,Cycle,Base Deletion,38752,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-140,Cycle,Base Substitution,32703,67.77,27.00,26.36,0.64,After
REGRESSION.HCC1395_tumor.L003,-140,Cycle,Base Insertion,32204,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-140,Cycle,Base Deletion,32204,2.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-141,Cycle,Base Substitution,32567,68.20,27.00,26.16,0.84,After
REGRESSION.HCC1395_tumor.L003,-141,Cycle,Base Insertion,32020,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-141,Cycle,Base Deletion,32020,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-142,Cycle,Base Substitution,32486,53.85,27.00,26.28,0.72,After
REGRESSION.HCC1395_tumor.L003,-142,Cycle,Base Insertion,31889,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-142,Cycle,Base Deletion,31889,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-143,Cycle,Base Substitution,32471,60.70,27.00,26.26,0.74,After
REGRESSION.HCC1395_tumor.L003,-143,Cycle,Base Insertion,31816,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-143,Cycle,Base Deletion,31816,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-144,Cycle,Base Substitution,32188,51.03,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L003,-144,Cycle,Base Insertion,31465,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-144,Cycle,Base Deletion,31465,0.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-145,Cycle,Base Substitution,32006,45.63,28.00,26.24,1.76,After
REGRESSION.HCC1395_tumor.L003,-145,Cycle,Base Insertion,24790,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-145,Cycle,Base Deletion,24790,0.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-146,Cycle,Base Substitution,31874,28.13,28.00,26.07,1.93,After
REGRESSION.HCC1395_tumor.L003,-146,Cycle,Base Insertion,24722,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-146,Cycle,Base Deletion,24722,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-147,Cycle,Base Substitution,31686,16.77,26.00,22.36,3.64,After
REGRESSION.HCC1395_tumor.L003,-148,Cycle,Base Substitution,31474,29.90,23.00,15.12,7.88,After
REGRESSION.HCC1395_tumor.L003,-149,Cycle,Base Substitution,19653,26.57,21.00,14.16,6.84,After
REGRESSION.HCC1395_tumor.L003,-15,Cycle,Base Substitution,38836,58.96,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L003,-15,Cycle,Base Insertion,38836,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-15,Cycle,Base Deletion,38836,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-150,Cycle,Base Substitution,6919,18.78,26.00,26.31,-0.31,After
REGRESSION.HCC1395_tumor.L003,-16,Cycle,Base Substitution,38738,56.01,28.00,27.62,0.38,After
REGRESSION.HCC1395_tumor.L003,-16,Cycle,Base Insertion,38738,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-16,Cycle,Base Deletion,38738,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-17,Cycle,Base Substitution,38876,57.48,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L003,-17,Cycle,Base Insertion,38876,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-17,Cycle,Base Deletion,38876,4.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-18,Cycle,Base Substitution,38742,65.63,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L003,-18,Cycle,Base Insertion,38742,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-18,Cycle,Base Deletion,38742,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-19,Cycle,Base Substitution,38694,64.44,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L003,-19,Cycle,Base Insertion,38694,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-19,Cycle,Base Deletion,38694,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-2,Cycle,Base Substitution,38976,129.54,25.00,25.59,-0.59,After
REGRESSION.HCC1395_tumor.L003,-20,Cycle,Base Substitution,38771,62.92,28.00,27.58,0.42,After
REGRESSION.HCC1395_tumor.L003,-20,Cycle,Base Insertion,38770,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-20,Cycle,Base Deletion,38770,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-21,Cycle,Base Substitution,38674,43.91,29.00,27.76,1.24,After
REGRESSION.HCC1395_tumor.L003,-21,Cycle,Base Insertion,38674,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-21,Cycle,Base Deletion,38674,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-22,Cycle,Base Substitution,38689,56.56,28.00,27.73,0.27,After
REGRESSION.HCC1395_tumor.L003,-22,Cycle,Base Insertion,38689,2.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-22,Cycle,Base Deletion,38689,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-23,Cycle,Base Substitution,38791,43.55,29.00,27.63,1.37,After
REGRESSION.HCC1395_tumor.L003,-23,Cycle,Base Insertion,38791,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-23,Cycle,Base Deletion,38791,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-24,Cycle,Base Substitution,38796,49.73,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L003,-24,Cycle,Base Insertion,38796,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-24,Cycle,Base Deletion,38796,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-25,Cycle,Base Substitution,38719,46.64,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L003,-25,Cycle,Base Insertion,38719,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-25,Cycle,Base Deletion,38719,4.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-26,Cycle,Base Substitution,38597,60.84,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L003,-26,Cycle,Base Insertion,38597,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-26,Cycle,Base Deletion,38597,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-27,Cycle,Base Substitution,38599,49.61,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L003,-27,Cycle,Base Insertion,38596,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-27,Cycle,Base Deletion,38596,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-28,Cycle,Base Substitution,38591,81.75,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L003,-28,Cycle,Base Insertion,38589,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-28,Cycle,Base Deletion,38589,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-29,Cycle,Base Substitution,38570,63.18,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L003,-29,Cycle,Base Insertion,38566,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-29,Cycle,Base Deletion,38566,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-3,Cycle,Base Substitution,38934,134.46,25.00,26.47,-1.47,After
REGRESSION.HCC1395_tumor.L003,-30,Cycle,Base Substitution,38569,58.61,28.00,26.60,1.40,After
REGRESSION.HCC1395_tumor.L003,-30,Cycle,Base Insertion,38562,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-30,Cycle,Base Deletion,38562,4.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-31,Cycle,Base Substitution,38634,64.92,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L003,-31,Cycle,Base Insertion,38628,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-31,Cycle,Base Deletion,38628,5.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-32,Cycle,Base Substitution,38678,52.69,28.00,26.53,1.47,After
REGRESSION.HCC1395_tumor.L003,-32,Cycle,Base Insertion,38670,0.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-32,Cycle,Base Deletion,38670,5.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-33,Cycle,Base Substitution,38553,50.16,28.00,26.92,1.08,After
REGRESSION.HCC1395_tumor.L003,-33,Cycle,Base Insertion,38546,0.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-33,Cycle,Base Deletion,38546,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-34,Cycle,Base Substitution,38470,45.14,28.00,26.72,1.28,After
REGRESSION.HCC1395_tumor.L003,-34,Cycle,Base Insertion,38468,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-34,Cycle,Base Deletion,38468,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-35,Cycle,Base Substitution,38569,53.05,28.00,27.00,1.00,After
REGRESSION.HCC1395_tumor.L003,-35,Cycle,Base Insertion,38566,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-35,Cycle,Base Deletion,38566,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-36,Cycle,Base Substitution,38568,57.31,28.00,26.62,1.38,After
REGRESSION.HCC1395_tumor.L003,-36,Cycle,Base Insertion,38565,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-36,Cycle,Base Deletion,38565,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-37,Cycle,Base Substitution,38393,66.50,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L003,-37,Cycle,Base Insertion,38391,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-37,Cycle,Base Deletion,38391,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-38,Cycle,Base Substitution,38569,62.32,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L003,-38,Cycle,Base Insertion,38567,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-38,Cycle,Base Deletion,38567,3.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-39,Cycle,Base Substitution,38496,53.91,28.00,26.60,1.40,After
REGRESSION.HCC1395_tumor.L003,-39,Cycle,Base Insertion,38492,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-39,Cycle,Base Deletion,38492,4.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-4,Cycle,Base Substitution,38803,84.13,27.00,26.18,0.82,After
REGRESSION.HCC1395_tumor.L003,-40,Cycle,Base Substitution,38562,68.36,27.00,26.51,0.49,After
REGRESSION.HCC1395_tumor.L003,-40,Cycle,Base Insertion,38559,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-40,Cycle,Base Deletion,38559,5.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-41,Cycle,Base Substitution,38369,59.51,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L003,-41,Cycle,Base Insertion,38366,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-41,Cycle,Base Deletion,38366,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-42,Cycle,Base Substitution,38281,36.59,29.00,27.57,1.43,After
REGRESSION.HCC1395_tumor.L003,-42,Cycle,Base Insertion,38276,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-42,Cycle,Base Deletion,38276,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-43,Cycle,Base Substitution,38499,58.84,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L003,-43,Cycle,Base Insertion,38494,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-43,Cycle,Base Deletion,38494,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-44,Cycle,Base Substitution,38444,49.24,28.00,27.08,0.92,After
REGRESSION.HCC1395_tumor.L003,-44,Cycle,Base Insertion,38440,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-44,Cycle,Base Deletion,38440,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-45,Cycle,Base Substitution,38564,53.83,28.00,26.83,1.17,After
REGRESSION.HCC1395_tumor.L003,-45,Cycle,Base Insertion,38558,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-45,Cycle,Base Deletion,38558,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-46,Cycle,Base Substitution,38358,41.05,28.00,26.87,1.13,After
REGRESSION.HCC1395_tumor.L003,-46,Cycle,Base Insertion,38353,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-46,Cycle,Base Deletion,38353,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-47,Cycle,Base Substitution,38420,68.44,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L003,-47,Cycle,Base Insertion,38414,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-47,Cycle,Base Deletion,38414,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-48,Cycle,Base Substitution,38427,49.77,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L003,-48,Cycle,Base Insertion,38418,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-48,Cycle,Base Deletion,38418,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-49,Cycle,Base Substitution,38368,57.61,28.00,26.82,1.18,After
REGRESSION.HCC1395_tumor.L003,-49,Cycle,Base Insertion,38354,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-49,Cycle,Base Deletion,38354,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-5,Cycle,Base Substitution,38932,61.84,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L003,-5,Cycle,Base Insertion,38932,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-5,Cycle,Base Deletion,38932,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-50,Cycle,Base Substitution,38403,62.77,28.00,27.12,0.88,After
REGRESSION.HCC1395_tumor.L003,-50,Cycle,Base Insertion,38391,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-50,Cycle,Base Deletion,38391,3.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-51,Cycle,Base Substitution,38287,56.37,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L003,-51,Cycle,Base Insertion,38265,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-51,Cycle,Base Deletion,38265,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-52,Cycle,Base Substitution,38299,53.01,28.00,26.76,1.24,After
REGRESSION.HCC1395_tumor.L003,-52,Cycle,Base Insertion,38276,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-52,Cycle,Base Deletion,38276,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-53,Cycle,Base Substitution,38177,44.58,28.00,26.92,1.08,After
REGRESSION.HCC1395_tumor.L003,-53,Cycle,Base Insertion,38151,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-53,Cycle,Base Deletion,38151,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-54,Cycle,Base Substitution,38242,68.54,27.00,27.04,-0.04,After
REGRESSION.HCC1395_tumor.L003,-54,Cycle,Base Insertion,38208,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-54,Cycle,Base Deletion,38208,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-55,Cycle,Base Substitution,38301,66.00,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L003,-55,Cycle,Base Insertion,38265,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-55,Cycle,Base Deletion,38265,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-56,Cycle,Base Substitution,38173,62.20,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L003,-56,Cycle,Base Insertion,38134,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-56,Cycle,Base Deletion,38134,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-57,Cycle,Base Substitution,38249,52.22,28.00,26.93,1.07,After
REGRESSION.HCC1395_tumor.L003,-57,Cycle,Base Insertion,38200,2.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-57,Cycle,Base Deletion,38200,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-58,Cycle,Base Substitution,38231,55.10,28.00,26.98,1.02,After
REGRESSION.HCC1395_tumor.L003,-58,Cycle,Base Insertion,38178,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-58,Cycle,Base Deletion,38178,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-59,Cycle,Base Substitution,38411,66.10,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L003,-59,Cycle,Base Insertion,38352,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-59,Cycle,Base Deletion,38352,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-6,Cycle,Base Substitution,38787,76.00,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L003,-6,Cycle,Base Insertion,38787,0.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-6,Cycle,Base Deletion,38787,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-60,Cycle,Base Substitution,38263,81.11,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L003,-60,Cycle,Base Insertion,38202,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-60,Cycle,Base Deletion,38202,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-61,Cycle,Base Substitution,37992,53.30,28.00,27.24,0.76,After
REGRESSION.HCC1395_tumor.L003,-61,Cycle,Base Insertion,37930,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-61,Cycle,Base Deletion,37930,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-62,Cycle,Base Substitution,38063,59.00,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L003,-62,Cycle,Base Insertion,37999,0.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-62,Cycle,Base Deletion,37999,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-63,Cycle,Base Substitution,38183,65.90,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L003,-63,Cycle,Base Insertion,38111,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-63,Cycle,Base Deletion,38111,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-64,Cycle,Base Substitution,38217,69.92,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L003,-64,Cycle,Base Insertion,38139,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-64,Cycle,Base Deletion,38139,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-65,Cycle,Base Substitution,38182,66.34,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L003,-65,Cycle,Base Insertion,38088,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-65,Cycle,Base Deletion,38088,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-66,Cycle,Base Substitution,38311,72.03,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L003,-66,Cycle,Base Insertion,38214,2.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-66,Cycle,Base Deletion,38214,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-67,Cycle,Base Substitution,38028,60.56,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L003,-67,Cycle,Base Insertion,37938,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-67,Cycle,Base Deletion,37938,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-68,Cycle,Base Substitution,38085,66.52,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L003,-68,Cycle,Base Insertion,37983,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-68,Cycle,Base Deletion,37983,4.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-69,Cycle,Base Substitution,38045,66.99,27.00,27.00,-0.00,After
REGRESSION.HCC1395_tumor.L003,-69,Cycle,Base Insertion,37939,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-69,Cycle,Base Deletion,37939,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-7,Cycle,Base Substitution,38732,83.33,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L003,-7,Cycle,Base Insertion,38732,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-7,Cycle,Base Deletion,38732,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-70,Cycle,Base Substitution,38107,71.52,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L003,-70,Cycle,Base Insertion,37997,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-70,Cycle,Base Deletion,37997,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-71,Cycle,Base Substitution,38059,80.63,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L003,-71,Cycle,Base Insertion,37926,2.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-71,Cycle,Base Deletion,37926,4.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-72,Cycle,Base Substitution,37907,69.60,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L003,-72,Cycle,Base Insertion,37766,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-72,Cycle,Base Deletion,37766,4.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-73,Cycle,Base Substitution,37873,60.73,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L003,-73,Cycle,Base Insertion,37721,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-73,Cycle,Base Deletion,37721,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-74,Cycle,Base Substitution,37932,62.85,28.00,27.00,1.00,After
REGRESSION.HCC1395_tumor.L003,-74,Cycle,Base Insertion,37769,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-74,Cycle,Base Deletion,37769,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-75,Cycle,Base Substitution,37854,63.63,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L003,-75,Cycle,Base Insertion,37688,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-75,Cycle,Base Deletion,37688,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-76,Cycle,Base Substitution,37819,73.87,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L003,-76,Cycle,Base Insertion,37642,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-76,Cycle,Base Deletion,37642,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-77,Cycle,Base Substitution,37762,73.15,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L003,-77,Cycle,Base Insertion,37586,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-77,Cycle,Base Deletion,37586,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-78,Cycle,Base Substitution,37611,87.78,26.00,26.77,-0.77,After
REGRESSION.HCC1395_tumor.L003,-78,Cycle,Base Insertion,37436,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-78,Cycle,Base Deletion,37436,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-79,Cycle,Base Substitution,37624,75.87,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L003,-79,Cycle,Base Insertion,37443,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-79,Cycle,Base Deletion,37443,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-8,Cycle,Base Substitution,38852,66.61,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L003,-8,Cycle,Base Insertion,38852,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-8,Cycle,Base Deletion,38852,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-80,Cycle,Base Substitution,37519,67.25,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L003,-80,Cycle,Base Insertion,37342,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-80,Cycle,Base Deletion,37342,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-81,Cycle,Base Substitution,37601,72.20,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L003,-81,Cycle,Base Insertion,37418,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-81,Cycle,Base Deletion,37418,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-82,Cycle,Base Substitution,37466,74.03,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L003,-82,Cycle,Base Insertion,37265,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-82,Cycle,Base Deletion,37265,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-83,Cycle,Base Substitution,37387,68.69,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L003,-83,Cycle,Base Insertion,37170,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-83,Cycle,Base Deletion,37170,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-84,Cycle,Base Substitution,37384,72.65,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L003,-84,Cycle,Base Insertion,37165,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-84,Cycle,Base Deletion,37165,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-85,Cycle,Base Substitution,37358,86.25,26.00,26.69,-0.69,After
REGRESSION.HCC1395_tumor.L003,-85,Cycle,Base Insertion,37154,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-85,Cycle,Base Deletion,37154,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-86,Cycle,Base Substitution,37073,89.29,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L003,-86,Cycle,Base Insertion,36861,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-86,Cycle,Base Deletion,36861,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-87,Cycle,Base Substitution,37287,76.01,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L003,-87,Cycle,Base Insertion,37062,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-87,Cycle,Base Deletion,37062,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-88,Cycle,Base Substitution,37243,75.56,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L003,-88,Cycle,Base Insertion,37006,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-88,Cycle,Base Deletion,37006,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-89,Cycle,Base Substitution,37090,90.61,26.00,26.44,-0.44,After
REGRESSION.HCC1395_tumor.L003,-89,Cycle,Base Insertion,36845,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-89,Cycle,Base Deletion,36845,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-9,Cycle,Base Substitution,38803,53.49,28.00,27.24,0.76,After
REGRESSION.HCC1395_tumor.L003,-9,Cycle,Base Insertion,38803,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-9,Cycle,Base Deletion,38803,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-90,Cycle,Base Substitution,37080,62.79,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L003,-90,Cycle,Base Insertion,36834,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-90,Cycle,Base Deletion,36834,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-91,Cycle,Base Substitution,36928,84.23,26.00,26.65,-0.65,After
REGRESSION.HCC1395_tumor.L003,-91,Cycle,Base Insertion,36675,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-91,Cycle,Base Deletion,36675,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-92,Cycle,Base Substitution,36808,77.40,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L003,-92,Cycle,Base Insertion,36539,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-92,Cycle,Base Deletion,36539,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-93,Cycle,Base Substitution,36876,92.51,26.00,25.87,0.13,After
REGRESSION.HCC1395_tumor.L003,-93,Cycle,Base Insertion,36618,1.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-93,Cycle,Base Deletion,36618,4.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-94,Cycle,Base Substitution,36690,70.98,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L003,-94,Cycle,Base Insertion,36426,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-94,Cycle,Base Deletion,36426,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-95,Cycle,Base Substitution,36682,78.10,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L003,-95,Cycle,Base Insertion,36414,4.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-95,Cycle,Base Deletion,36414,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-96,Cycle,Base Substitution,36617,96.86,26.00,26.47,-0.47,After
REGRESSION.HCC1395_tumor.L003,-96,Cycle,Base Insertion,36337,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-96,Cycle,Base Deletion,36337,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-97,Cycle,Base Substitution,36471,84.26,26.00,26.53,-0.53,After
REGRESSION.HCC1395_tumor.L003,-97,Cycle,Base Insertion,36159,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-97,Cycle,Base Deletion,36159,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-98,Cycle,Base Substitution,36596,75.83,27.00,26.31,0.69,After
REGRESSION.HCC1395_tumor.L003,-98,Cycle,Base Insertion,36288,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-98,Cycle,Base Deletion,36288,4.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-99,Cycle,Base Substitution,36350,80.22,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L003,-99,Cycle,Base Insertion,36050,2.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,-99,Cycle,Base Deletion,36050,4.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,1,Cycle,Base Substitution,38410,90.67,26.00,25.92,0.08,After
REGRESSION.HCC1395_tumor.L003,10,Cycle,Base Substitution,38769,46.93,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L003,10,Cycle,Base Insertion,38769,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,10,Cycle,Base Deletion,38769,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,100,Cycle,Base Substitution,36310,68.77,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L003,100,Cycle,Base Insertion,36013,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,100,Cycle,Base Deletion,36013,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,101,Cycle,Base Substitution,36371,57.76,27.00,26.91,0.09,After
REGRESSION.HCC1395_tumor.L003,101,Cycle,Base Insertion,36079,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,101,Cycle,Base Deletion,36079,4.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,102,Cycle,Base Substitution,36305,62.62,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L003,102,Cycle,Base Insertion,36002,2.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,102,Cycle,Base Deletion,36002,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,103,Cycle,Base Substitution,36162,52.52,28.00,26.69,1.31,After
REGRESSION.HCC1395_tumor.L003,103,Cycle,Base Insertion,35855,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,103,Cycle,Base Deletion,35855,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,104,Cycle,Base Substitution,36234,60.07,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L003,104,Cycle,Base Insertion,35930,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,104,Cycle,Base Deletion,35930,4.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,105,Cycle,Base Substitution,36105,72.49,27.00,27.00,-0.00,After
REGRESSION.HCC1395_tumor.L003,105,Cycle,Base Insertion,35799,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,105,Cycle,Base Deletion,35799,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,106,Cycle,Base Substitution,35855,63.72,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L003,106,Cycle,Base Insertion,35535,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,106,Cycle,Base Deletion,35535,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,107,Cycle,Base Substitution,35905,76.55,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L003,107,Cycle,Base Insertion,35590,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,107,Cycle,Base Deletion,35590,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,108,Cycle,Base Substitution,35688,71.64,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L003,108,Cycle,Base Insertion,35347,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,108,Cycle,Base Deletion,35347,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,109,Cycle,Base Substitution,35791,58.34,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L003,109,Cycle,Base Insertion,35460,2.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,109,Cycle,Base Deletion,35460,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,11,Cycle,Base Substitution,38693,40.66,29.00,27.60,1.40,After
REGRESSION.HCC1395_tumor.L003,11,Cycle,Base Insertion,38693,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,11,Cycle,Base Deletion,38693,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,110,Cycle,Base Substitution,35551,91.00,26.00,25.88,0.12,After
REGRESSION.HCC1395_tumor.L003,110,Cycle,Base Insertion,35218,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,110,Cycle,Base Deletion,35218,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,111,Cycle,Base Substitution,35436,66.46,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L003,111,Cycle,Base Insertion,35102,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,111,Cycle,Base Deletion,35102,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,112,Cycle,Base Substitution,35331,62.35,27.00,26.91,0.09,After
REGRESSION.HCC1395_tumor.L003,112,Cycle,Base Insertion,35017,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,112,Cycle,Base Deletion,35017,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,113,Cycle,Base Substitution,35429,62.71,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L003,113,Cycle,Base Insertion,35113,1.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,113,Cycle,Base Deletion,35113,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,114,Cycle,Base Substitution,35243,61.22,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L003,114,Cycle,Base Insertion,34922,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,114,Cycle,Base Deletion,34922,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,115,Cycle,Base Substitution,35224,79.74,26.00,26.54,-0.54,After
REGRESSION.HCC1395_tumor.L003,115,Cycle,Base Insertion,34880,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,115,Cycle,Base Deletion,34880,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,116,Cycle,Base Substitution,35071,70.53,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L003,116,Cycle,Base Insertion,34733,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,116,Cycle,Base Deletion,34733,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,117,Cycle,Base Substitution,35144,76.90,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L003,117,Cycle,Base Insertion,34788,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,117,Cycle,Base Deletion,34788,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,118,Cycle,Base Substitution,34908,57.74,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L003,118,Cycle,Base Insertion,34552,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,118,Cycle,Base Deletion,34552,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,119,Cycle,Base Substitution,34865,63.69,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L003,119,Cycle,Base Insertion,34492,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,119,Cycle,Base Deletion,34492,4.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,12,Cycle,Base Substitution,38668,42.83,29.00,27.87,1.13,After
REGRESSION.HCC1395_tumor.L003,12,Cycle,Base Insertion,38668,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,12,Cycle,Base Deletion,38668,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,120,Cycle,Base Substitution,34744,60.97,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L003,120,Cycle,Base Insertion,34387,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,120,Cycle,Base Deletion,34387,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,121,Cycle,Base Substitution,34647,66.44,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L003,121,Cycle,Base Insertion,34283,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,121,Cycle,Base Deletion,34283,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,122,Cycle,Base Substitution,34681,65.01,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L003,122,Cycle,Base Insertion,34321,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,122,Cycle,Base Deletion,34321,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,123,Cycle,Base Substitution,34494,73.86,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L003,123,Cycle,Base Insertion,34136,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,123,Cycle,Base Deletion,34136,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,124,Cycle,Base Substitution,34373,64.75,27.00,25.88,1.12,After
REGRESSION.HCC1395_tumor.L003,124,Cycle,Base Insertion,33984,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,124,Cycle,Base Deletion,33984,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,125,Cycle,Base Substitution,34248,56.37,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L003,125,Cycle,Base Insertion,33868,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,125,Cycle,Base Deletion,33868,2.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,126,Cycle,Base Substitution,34308,67.30,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L003,126,Cycle,Base Insertion,33918,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,126,Cycle,Base Deletion,33918,2.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,127,Cycle,Base Substitution,34213,61.15,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L003,127,Cycle,Base Insertion,33829,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,127,Cycle,Base Deletion,33829,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,128,Cycle,Base Substitution,34035,67.58,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L003,128,Cycle,Base Insertion,33662,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,128,Cycle,Base Deletion,33662,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,129,Cycle,Base Substitution,33984,79.36,26.00,26.06,-0.06,After
REGRESSION.HCC1395_tumor.L003,129,Cycle,Base Insertion,33620,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,129,Cycle,Base Deletion,33620,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,13,Cycle,Base Substitution,38748,33.48,30.00,28.08,1.92,After
REGRESSION.HCC1395_tumor.L003,13,Cycle,Base Insertion,38748,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,13,Cycle,Base Deletion,38748,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,130,Cycle,Base Substitution,33869,66.71,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L003,130,Cycle,Base Insertion,33492,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,130,Cycle,Base Deletion,33492,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,131,Cycle,Base Substitution,33759,72.40,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L003,131,Cycle,Base Insertion,33386,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,131,Cycle,Base Deletion,33386,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,132,Cycle,Base Substitution,33798,59.68,27.00,26.50,0.50,After
REGRESSION.HCC1395_tumor.L003,132,Cycle,Base Insertion,33421,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,132,Cycle,Base Deletion,33421,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,133,Cycle,Base Substitution,33555,77.26,26.00,26.53,-0.53,After
REGRESSION.HCC1395_tumor.L003,133,Cycle,Base Insertion,33147,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,133,Cycle,Base Deletion,33147,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,134,Cycle,Base Substitution,33504,79.51,26.00,25.85,0.15,After
REGRESSION.HCC1395_tumor.L003,134,Cycle,Base Insertion,33082,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,134,Cycle,Base Deletion,33082,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,135,Cycle,Base Substitution,33252,69.50,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L003,135,Cycle,Base Insertion,32822,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,135,Cycle,Base Deletion,32822,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,136,Cycle,Base Substitution,33296,71.79,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L003,136,Cycle,Base Insertion,32860,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,136,Cycle,Base Deletion,32860,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,137,Cycle,Base Substitution,33233,62.23,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L003,137,Cycle,Base Insertion,32795,0.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,137,Cycle,Base Deletion,32795,2.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,138,Cycle,Base Substitution,33145,78.32,26.00,26.48,-0.48,After
REGRESSION.HCC1395_tumor.L003,138,Cycle,Base Insertion,32726,0.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,138,Cycle,Base Deletion,32726,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,139,Cycle,Base Substitution,32995,69.23,27.00,26.50,0.50,After
REGRESSION.HCC1395_tumor.L003,139,Cycle,Base Insertion,32579,0.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,139,Cycle,Base Deletion,32579,3.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,14,Cycle,Base Substitution,38643,38.05,29.00,27.81,1.19,After
REGRESSION.HCC1395_tumor.L003,14,Cycle,Base Insertion,38643,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,14,Cycle,Base Deletion,38643,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,140,Cycle,Base Substitution,32902,70.64,27.00,26.07,0.93,After
REGRESSION.HCC1395_tumor.L003,140,Cycle,Base Insertion,32501,0.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,140,Cycle,Base Deletion,32501,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,141,Cycle,Base Substitution,32821,67.36,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L003,141,Cycle,Base Insertion,32414,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,141,Cycle,Base Deletion,32414,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,142,Cycle,Base Substitution,32700,76.89,26.00,26.71,-0.71,After
REGRESSION.HCC1395_tumor.L003,142,Cycle,Base Insertion,32240,0.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,142,Cycle,Base Deletion,32240,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,143,Cycle,Base Substitution,32642,78.80,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L003,143,Cycle,Base Insertion,32199,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,143,Cycle,Base Deletion,32199,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,144,Cycle,Base Substitution,32539,63.52,27.00,26.33,0.67,After
REGRESSION.HCC1395_tumor.L003,144,Cycle,Base Insertion,32067,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,144,Cycle,Base Deletion,32067,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,145,Cycle,Base Substitution,32347,55.73,27.00,26.33,0.67,After
REGRESSION.HCC1395_tumor.L003,145,Cycle,Base Insertion,31887,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,145,Cycle,Base Deletion,31887,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,146,Cycle,Base Substitution,32215,86.27,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L003,146,Cycle,Base Insertion,31781,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,146,Cycle,Base Deletion,31781,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,147,Cycle,Base Substitution,32135,77.24,26.00,26.39,-0.39,After
REGRESSION.HCC1395_tumor.L003,148,Cycle,Base Substitution,32055,83.83,26.00,26.63,-0.63,After
REGRESSION.HCC1395_tumor.L003,149,Cycle,Base Substitution,31879,90.02,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L003,15,Cycle,Base Substitution,38843,36.03,29.00,27.71,1.29,After
REGRESSION.HCC1395_tumor.L003,15,Cycle,Base Insertion,38843,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,15,Cycle,Base Deletion,38843,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,150,Cycle,Base Substitution,31896,73.99,26.00,26.57,-0.57,After
REGRESSION.HCC1395_tumor.L003,16,Cycle,Base Substitution,38766,31.47,30.00,28.65,1.35,After
REGRESSION.HCC1395_tumor.L003,16,Cycle,Base Insertion,38766,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,16,Cycle,Base Deletion,38766,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,17,Cycle,Base Substitution,38773,27.91,30.00,28.58,1.42,After
REGRESSION.HCC1395_tumor.L003,17,Cycle,Base Insertion,38773,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,17,Cycle,Base Deletion,38773,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,18,Cycle,Base Substitution,38762,22.03,30.00,28.64,1.36,After
REGRESSION.HCC1395_tumor.L003,18,Cycle,Base Insertion,38762,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,18,Cycle,Base Deletion,38762,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,19,Cycle,Base Substitution,38664,28.99,30.00,28.34,1.66,After
REGRESSION.HCC1395_tumor.L003,19,Cycle,Base Insertion,38664,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,19,Cycle,Base Deletion,38664,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,2,Cycle,Base Substitution,38902,85.21,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L003,20,Cycle,Base Substitution,38651,18.80,30.00,28.62,1.38,After
REGRESSION.HCC1395_tumor.L003,20,Cycle,Base Insertion,38651,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,20,Cycle,Base Deletion,38651,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,21,Cycle,Base Substitution,38634,34.76,29.00,28.82,0.18,After
REGRESSION.HCC1395_tumor.L003,21,Cycle,Base Insertion,38634,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,21,Cycle,Base Deletion,38634,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,22,Cycle,Base Substitution,38610,28.89,30.00,28.32,1.68,After
REGRESSION.HCC1395_tumor.L003,22,Cycle,Base Insertion,38609,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,22,Cycle,Base Deletion,38609,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,23,Cycle,Base Substitution,38701,24.84,30.00,28.52,1.48,After
REGRESSION.HCC1395_tumor.L003,23,Cycle,Base Insertion,38700,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,23,Cycle,Base Deletion,38700,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,24,Cycle,Base Substitution,38579,29.76,30.00,28.50,1.50,After
REGRESSION.HCC1395_tumor.L003,24,Cycle,Base Insertion,38578,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,24,Cycle,Base Deletion,38578,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,25,Cycle,Base Substitution,38572,31.75,30.00,28.49,1.51,After
REGRESSION.HCC1395_tumor.L003,25,Cycle,Base Insertion,38571,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,25,Cycle,Base Deletion,38571,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,26,Cycle,Base Substitution,38546,43.66,29.00,27.65,1.35,After
REGRESSION.HCC1395_tumor.L003,26,Cycle,Base Insertion,38546,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,26,Cycle,Base Deletion,38546,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,27,Cycle,Base Substitution,38360,41.41,29.00,27.73,1.27,After
REGRESSION.HCC1395_tumor.L003,27,Cycle,Base Insertion,38358,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,27,Cycle,Base Deletion,38358,2.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,28,Cycle,Base Substitution,38446,45.88,28.00,27.74,0.26,After
REGRESSION.HCC1395_tumor.L003,28,Cycle,Base Insertion,38445,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,28,Cycle,Base Deletion,38445,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,29,Cycle,Base Substitution,38606,33.05,30.00,28.37,1.63,After
REGRESSION.HCC1395_tumor.L003,29,Cycle,Base Insertion,38601,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,29,Cycle,Base Deletion,38601,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,3,Cycle,Base Substitution,38892,105.83,26.00,27.36,-1.36,After
REGRESSION.HCC1395_tumor.L003,30,Cycle,Base Substitution,38599,48.00,28.00,27.73,0.27,After
REGRESSION.HCC1395_tumor.L003,30,Cycle,Base Insertion,38590,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,30,Cycle,Base Deletion,38590,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,31,Cycle,Base Substitution,38592,44.54,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L003,31,Cycle,Base Insertion,38583,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,31,Cycle,Base Deletion,38583,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,32,Cycle,Base Substitution,38589,60.53,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L003,32,Cycle,Base Insertion,38579,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,32,Cycle,Base Deletion,38579,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,33,Cycle,Base Substitution,38523,36.52,29.00,28.45,0.55,After
REGRESSION.HCC1395_tumor.L003,33,Cycle,Base Insertion,38517,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,33,Cycle,Base Deletion,38517,4.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,34,Cycle,Base Substitution,38501,40.43,29.00,27.79,1.21,After
REGRESSION.HCC1395_tumor.L003,34,Cycle,Base Insertion,38497,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,34,Cycle,Base Deletion,38497,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,35,Cycle,Base Substitution,38544,38.14,29.00,27.63,1.37,After
REGRESSION.HCC1395_tumor.L003,35,Cycle,Base Insertion,38540,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,35,Cycle,Base Deletion,38540,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,36,Cycle,Base Substitution,38388,53.53,28.00,28.12,-0.12,After
REGRESSION.HCC1395_tumor.L003,36,Cycle,Base Insertion,38385,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,36,Cycle,Base Deletion,38385,4.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,37,Cycle,Base Substitution,38408,40.38,29.00,27.90,1.10,After
REGRESSION.HCC1395_tumor.L003,37,Cycle,Base Insertion,38404,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,37,Cycle,Base Deletion,38404,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,38,Cycle,Base Substitution,38429,50.01,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L003,38,Cycle,Base Insertion,38427,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,38,Cycle,Base Deletion,38427,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,39,Cycle,Base Substitution,38480,38.07,29.00,27.55,1.45,After
REGRESSION.HCC1395_tumor.L003,39,Cycle,Base Insertion,38478,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,39,Cycle,Base Deletion,38478,5.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,4,Cycle,Base Substitution,38764,78.06,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L003,40,Cycle,Base Substitution,38385,41.91,29.00,27.90,1.10,After
REGRESSION.HCC1395_tumor.L003,40,Cycle,Base Insertion,38383,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,40,Cycle,Base Deletion,38383,5.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,41,Cycle,Base Substitution,38425,48.38,29.00,28.05,0.95,After
REGRESSION.HCC1395_tumor.L003,41,Cycle,Base Insertion,38424,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,41,Cycle,Base Deletion,38424,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,42,Cycle,Base Substitution,38366,35.81,29.00,28.18,0.82,After
REGRESSION.HCC1395_tumor.L003,42,Cycle,Base Insertion,38365,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,42,Cycle,Base Deletion,38365,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,43,Cycle,Base Substitution,38488,44.39,29.00,28.14,0.86,After
REGRESSION.HCC1395_tumor.L003,43,Cycle,Base Insertion,38486,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,43,Cycle,Base Deletion,38486,4.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,44,Cycle,Base Substitution,38482,42.89,29.00,28.04,0.96,After
REGRESSION.HCC1395_tumor.L003,44,Cycle,Base Insertion,38479,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,44,Cycle,Base Deletion,38479,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,45,Cycle,Base Substitution,38409,33.96,29.00,28.03,0.97,After
REGRESSION.HCC1395_tumor.L003,45,Cycle,Base Insertion,38401,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,45,Cycle,Base Deletion,38401,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,46,Cycle,Base Substitution,38419,31.64,30.00,28.33,1.67,After
REGRESSION.HCC1395_tumor.L003,46,Cycle,Base Insertion,38410,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,46,Cycle,Base Deletion,38410,4.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,47,Cycle,Base Substitution,38429,44.14,29.00,27.64,1.36,After
REGRESSION.HCC1395_tumor.L003,47,Cycle,Base Insertion,38419,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,47,Cycle,Base Deletion,38419,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,48,Cycle,Base Substitution,38407,50.64,28.00,27.60,0.40,After
REGRESSION.HCC1395_tumor.L003,48,Cycle,Base Insertion,38395,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,48,Cycle,Base Deletion,38395,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,49,Cycle,Base Substitution,38424,37.22,29.00,27.94,1.06,After
REGRESSION.HCC1395_tumor.L003,49,Cycle,Base Insertion,38412,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,49,Cycle,Base Deletion,38412,5.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,5,Cycle,Base Substitution,38866,54.09,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L003,5,Cycle,Base Insertion,38866,0.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,5,Cycle,Base Deletion,38866,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,50,Cycle,Base Substitution,38344,43.33,29.00,27.66,1.34,After
REGRESSION.HCC1395_tumor.L003,50,Cycle,Base Insertion,38330,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,50,Cycle,Base Deletion,38330,5.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,51,Cycle,Base Substitution,38271,53.49,28.00,27.60,0.40,After
REGRESSION.HCC1395_tumor.L003,51,Cycle,Base Insertion,38253,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,51,Cycle,Base Deletion,38253,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,52,Cycle,Base Substitution,38500,48.42,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L003,52,Cycle,Base Insertion,38480,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,52,Cycle,Base Deletion,38480,5.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,53,Cycle,Base Substitution,38306,45.09,28.00,27.76,0.24,After
REGRESSION.HCC1395_tumor.L003,53,Cycle,Base Insertion,38279,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,53,Cycle,Base Deletion,38279,5.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,54,Cycle,Base Substitution,38279,39.34,29.00,27.72,1.28,After
REGRESSION.HCC1395_tumor.L003,54,Cycle,Base Insertion,38245,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,54,Cycle,Base Deletion,38245,5.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,55,Cycle,Base Substitution,38329,40.39,29.00,27.75,1.25,After
REGRESSION.HCC1395_tumor.L003,55,Cycle,Base Insertion,38295,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,55,Cycle,Base Deletion,38295,5.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,56,Cycle,Base Substitution,38296,56.14,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L003,56,Cycle,Base Insertion,38257,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,56,Cycle,Base Deletion,38257,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,57,Cycle,Base Substitution,38295,54.97,28.00,27.41,0.59,After
REGRESSION.HCC1395_tumor.L003,57,Cycle,Base Insertion,38237,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,57,Cycle,Base Deletion,38237,4.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,58,Cycle,Base Substitution,38182,45.10,28.00,27.68,0.32,After
REGRESSION.HCC1395_tumor.L003,58,Cycle,Base Insertion,38116,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,58,Cycle,Base Deletion,38116,4.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,59,Cycle,Base Substitution,38165,43.77,29.00,27.59,1.41,After
REGRESSION.HCC1395_tumor.L003,59,Cycle,Base Insertion,38097,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,59,Cycle,Base Deletion,38097,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,6,Cycle,Base Substitution,38727,51.64,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L003,6,Cycle,Base Insertion,38727,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,6,Cycle,Base Deletion,38727,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,60,Cycle,Base Substitution,38186,44.08,29.00,27.66,1.34,After
REGRESSION.HCC1395_tumor.L003,60,Cycle,Base Insertion,38121,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,60,Cycle,Base Deletion,38121,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,61,Cycle,Base Substitution,38119,48.97,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L003,61,Cycle,Base Insertion,38056,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,61,Cycle,Base Deletion,38056,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,62,Cycle,Base Substitution,38148,53.49,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L003,62,Cycle,Base Insertion,38085,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,62,Cycle,Base Deletion,38085,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,63,Cycle,Base Substitution,38188,43.25,29.00,27.68,1.32,After
REGRESSION.HCC1395_tumor.L003,63,Cycle,Base Insertion,38125,2.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,63,Cycle,Base Deletion,38125,4.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,64,Cycle,Base Substitution,38120,48.02,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L003,64,Cycle,Base Insertion,38037,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,64,Cycle,Base Deletion,38037,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,65,Cycle,Base Substitution,38188,45.45,28.00,27.60,0.40,After
REGRESSION.HCC1395_tumor.L003,65,Cycle,Base Insertion,38100,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,65,Cycle,Base Deletion,38100,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,66,Cycle,Base Substitution,38112,43.18,29.00,27.62,1.38,After
REGRESSION.HCC1395_tumor.L003,66,Cycle,Base Insertion,38017,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,66,Cycle,Base Deletion,38017,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,67,Cycle,Base Substitution,38145,41.72,29.00,27.96,1.04,After
REGRESSION.HCC1395_tumor.L003,67,Cycle,Base Insertion,38048,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,67,Cycle,Base Deletion,38048,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,68,Cycle,Base Substitution,37935,52.48,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L003,68,Cycle,Base Insertion,37835,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,68,Cycle,Base Deletion,37835,4.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,69,Cycle,Base Substitution,37907,58.14,28.00,27.42,0.58,After
REGRESSION.HCC1395_tumor.L003,69,Cycle,Base Insertion,37804,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,69,Cycle,Base Deletion,37804,6.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,7,Cycle,Base Substitution,38753,49.04,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L003,7,Cycle,Base Insertion,38753,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,7,Cycle,Base Deletion,38753,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,70,Cycle,Base Substitution,37987,64.48,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L003,70,Cycle,Base Insertion,37878,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,70,Cycle,Base Deletion,37878,5.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,71,Cycle,Base Substitution,38003,39.39,29.00,27.37,1.63,After
REGRESSION.HCC1395_tumor.L003,71,Cycle,Base Insertion,37878,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,71,Cycle,Base Deletion,37878,5.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,72,Cycle,Base Substitution,37943,54.20,28.00,27.33,0.67,After
REGRESSION.HCC1395_tumor.L003,72,Cycle,Base Insertion,37810,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,72,Cycle,Base Deletion,37810,4.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,73,Cycle,Base Substitution,37835,60.62,28.00,27.44,0.56,After
REGRESSION.HCC1395_tumor.L003,73,Cycle,Base Insertion,37688,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,73,Cycle,Base Deletion,37688,4.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,74,Cycle,Base Substitution,37848,48.00,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L003,74,Cycle,Base Insertion,37687,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,74,Cycle,Base Deletion,37687,6.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,75,Cycle,Base Substitution,37836,63.27,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L003,75,Cycle,Base Insertion,37672,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,75,Cycle,Base Deletion,37672,4.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,76,Cycle,Base Substitution,37783,57.68,28.00,27.22,0.78,After
REGRESSION.HCC1395_tumor.L003,76,Cycle,Base Insertion,37610,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,76,Cycle,Base Deletion,37610,4.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,77,Cycle,Base Substitution,37675,64.80,28.00,27.32,0.68,After
REGRESSION.HCC1395_tumor.L003,77,Cycle,Base Insertion,37499,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,77,Cycle,Base Deletion,37499,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,78,Cycle,Base Substitution,37649,57.50,28.00,27.30,0.70,After
REGRESSION.HCC1395_tumor.L003,78,Cycle,Base Insertion,37476,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,78,Cycle,Base Deletion,37476,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,79,Cycle,Base Substitution,37558,57.31,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L003,79,Cycle,Base Insertion,37378,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,79,Cycle,Base Deletion,37378,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,8,Cycle,Base Substitution,38835,44.43,29.00,27.43,1.57,After
REGRESSION.HCC1395_tumor.L003,8,Cycle,Base Insertion,38835,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,8,Cycle,Base Deletion,38835,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,80,Cycle,Base Substitution,37537,57.12,28.00,27.10,0.90,After
REGRESSION.HCC1395_tumor.L003,80,Cycle,Base Insertion,37358,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,80,Cycle,Base Deletion,37358,4.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,81,Cycle,Base Substitution,37529,51.11,28.00,27.06,0.94,After
REGRESSION.HCC1395_tumor.L003,81,Cycle,Base Insertion,37349,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,81,Cycle,Base Deletion,37349,4.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,82,Cycle,Base Substitution,37442,64.07,28.00,27.25,0.75,After
REGRESSION.HCC1395_tumor.L003,82,Cycle,Base Insertion,37262,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,82,Cycle,Base Deletion,37262,4.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,83,Cycle,Base Substitution,37394,60.46,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L003,83,Cycle,Base Insertion,37183,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,83,Cycle,Base Deletion,37183,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,84,Cycle,Base Substitution,37426,55.62,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L003,84,Cycle,Base Insertion,37219,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,84,Cycle,Base Deletion,37219,3.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,85,Cycle,Base Substitution,37346,62.65,27.00,26.91,0.09,After
REGRESSION.HCC1395_tumor.L003,85,Cycle,Base Insertion,37131,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,85,Cycle,Base Deletion,37131,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,86,Cycle,Base Substitution,37295,67.65,27.00,27.32,-0.32,After
REGRESSION.HCC1395_tumor.L003,86,Cycle,Base Insertion,37083,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,86,Cycle,Base Deletion,37083,4.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,87,Cycle,Base Substitution,37112,56.00,28.00,27.12,0.88,After
REGRESSION.HCC1395_tumor.L003,87,Cycle,Base Insertion,36894,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,87,Cycle,Base Deletion,36894,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,88,Cycle,Base Substitution,37191,55.70,28.00,27.15,0.85,After
REGRESSION.HCC1395_tumor.L003,88,Cycle,Base Insertion,36960,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,88,Cycle,Base Deletion,36960,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,89,Cycle,Base Substitution,37154,57.87,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L003,89,Cycle,Base Insertion,36918,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,89,Cycle,Base Deletion,36918,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,9,Cycle,Base Substitution,38845,43.40,29.00,27.66,1.34,After
REGRESSION.HCC1395_tumor.L003,9,Cycle,Base Insertion,38845,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,9,Cycle,Base Deletion,38845,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,90,Cycle,Base Substitution,37089,56.00,28.00,27.07,0.93,After
REGRESSION.HCC1395_tumor.L003,90,Cycle,Base Insertion,36852,2.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,90,Cycle,Base Deletion,36852,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,91,Cycle,Base Substitution,36911,55.88,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L003,91,Cycle,Base Insertion,36659,4.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,91,Cycle,Base Deletion,36659,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,92,Cycle,Base Substitution,36848,63.01,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L003,92,Cycle,Base Insertion,36587,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,92,Cycle,Base Deletion,36587,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,93,Cycle,Base Substitution,36868,63.63,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L003,93,Cycle,Base Insertion,36603,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,93,Cycle,Base Deletion,36603,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,94,Cycle,Base Substitution,36797,74.12,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L003,94,Cycle,Base Insertion,36518,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,94,Cycle,Base Deletion,36518,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,95,Cycle,Base Substitution,36778,59.49,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L003,95,Cycle,Base Insertion,36498,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,95,Cycle,Base Deletion,36498,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,96,Cycle,Base Substitution,36681,62.66,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L003,96,Cycle,Base Insertion,36402,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,96,Cycle,Base Deletion,36402,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,97,Cycle,Base Substitution,36641,66.87,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L003,97,Cycle,Base Insertion,36342,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,97,Cycle,Base Deletion,36342,2.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,98,Cycle,Base Substitution,36532,70.06,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L003,98,Cycle,Base Insertion,36236,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,98,Cycle,Base Deletion,36236,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,99,Cycle,Base Substitution,36351,67.82,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L003,99,Cycle,Base Insertion,36065,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,99,Cycle,Base Deletion,36065,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L003,10,QualityScore,Base Substitution,14154,1499.70,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L003,11,QualityScore,Base Substitution,13819,1046.67,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L003,12,QualityScore,Base Substitution,22096,1265.39,12.00,12.00,0.00,After
REGRESSION.HCC1395_tumor.L003,13,QualityScore,Base Substitution,6726,76.29,17.00,13.00,4.00,After
REGRESSION.HCC1395_tumor.L003,14,QualityScore,Base Substitution,24896,327.60,18.00,14.00,4.00,After
REGRESSION.HCC1395_tumor.L003,15,QualityScore,Base Substitution,17604,9.10,22.00,15.00,7.00,After
REGRESSION.HCC1395_tumor.L003,16,QualityScore,Base Substitution,14390,1.93,22.00,16.00,6.00,After
REGRESSION.HCC1395_tumor.L003,22,QualityScore,Base Substitution,8053,2.08,24.00,22.00,2.00,After
REGRESSION.HCC1395_tumor.L003,23,QualityScore,Base Substitution,109879,673.79,22.00,23.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,24,QualityScore,Base Substitution,97758,386.35,24.00,24.00,0.00,After
REGRESSION.HCC1395_tumor.L003,25,QualityScore,Base Substitution,125211,236.12,27.00,25.00,2.00,After
REGRESSION.HCC1395_tumor.L003,28,QualityScore,Base Substitution,7790,2.44,28.00,28.00,0.00,After
REGRESSION.HCC1395_tumor.L003,29,QualityScore,Base Substitution,58084,97.26,28.00,29.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,30,QualityScore,Base Substitution,2492060,1496.05,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L003,31,QualityScore,Base Substitution,2859735,1269.27,33.00,31.00,2.00,After
REGRESSION.HCC1395_tumor.L003,32,QualityScore,Base Substitution,4660782,1093.66,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L003,33,QualityScore,Base Substitution,400024,55.19,36.00,33.00,3.00,After
REGRESSION.HCC1395_tumor.L003,45,QualityScore,Base Insertion,11000515,501.11,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,45,QualityScore,Base Deletion,11000515,1002.56,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L003,8,QualityScore,Base Substitution,4584,837.73,7.00,8.00,-1.00,After
REGRESSION.HCC1395_tumor.L003,9,QualityScore,Base Substitution,62870,8355.47,9.00,9.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AA,Context,Base Substitution,835630,1815.91,27.00,25.50,1.50,After
REGRESSION.HCC1395_tumor.L004,AAA,Context,Base Insertion,297690,58.58,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L004,AAA,Context,Base Deletion,297690,212.15,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L004,AAC,Context,Base Insertion,132645,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AAC,Context,Base Deletion,132645,7.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AAG,Context,Base Insertion,197770,7.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AAG,Context,Base Deletion,197770,8.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AAT,Context,Base Insertion,174136,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AAT,Context,Base Deletion,174136,12.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AC,Context,Base Substitution,530214,1873.51,25.00,24.76,0.24,After
REGRESSION.HCC1395_tumor.L004,ACA,Context,Base Insertion,204085,18.96,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,ACA,Context,Base Deletion,204085,40.28,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L004,ACC,Context,Base Insertion,146004,7.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ACC,Context,Base Deletion,146004,6.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ACG,Context,Base Insertion,30444,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ACG,Context,Base Deletion,30444,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ACT,Context,Base Insertion,158368,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ACT,Context,Base Deletion,158368,15.24,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,AG,Context,Base Substitution,797101,606.74,31.00,28.75,2.25,After
REGRESSION.HCC1395_tumor.L004,AGA,Context,Base Insertion,221341,5.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AGA,Context,Base Deletion,221341,11.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AGC,Context,Base Insertion,190941,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AGC,Context,Base Deletion,190941,5.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AGG,Context,Base Insertion,225895,14.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AGG,Context,Base Deletion,225895,7.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AGT,Context,Base Insertion,154922,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AGT,Context,Base Deletion,154922,5.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,AT,Context,Base Substitution,601377,641.18,30.00,27.65,2.35,After
REGRESSION.HCC1395_tumor.L004,ATA,Context,Base Insertion,134757,8.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ATA,Context,Base Deletion,134757,5.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ATC,Context,Base Insertion,120917,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ATC,Context,Base Deletion,120917,5.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ATG,Context,Base Insertion,173871,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ATG,Context,Base Deletion,173871,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ATT,Context,Base Insertion,182114,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,ATT,Context,Base Deletion,182114,7.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CA,Context,Base Substitution,852688,1787.78,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L004,CAA,Context,Base Insertion,171940,6.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CAA,Context,Base Deletion,171940,11.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CAC,Context,Base Insertion,182812,21.67,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,CAC,Context,Base Deletion,182812,39.32,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L004,CAG,Context,Base Insertion,290431,9.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CAG,Context,Base Deletion,290431,11.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CAT,Context,Base Insertion,169504,7.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CAT,Context,Base Deletion,169504,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CC,Context,Base Substitution,759676,2407.13,25.00,24.69,0.31,After
REGRESSION.HCC1395_tumor.L004,CCA,Context,Base Insertion,243339,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CCA,Context,Base Deletion,243339,8.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CCC,Context,Base Insertion,210468,16.46,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,CCC,Context,Base Deletion,210468,18.25,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,CCG,Context,Base Insertion,53550,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CCG,Context,Base Deletion,53550,7.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CCT,Context,Base Insertion,242078,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CCT,Context,Base Deletion,242078,12.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CG,Context,Base Substitution,159892,504.12,25.00,25.53,-0.53,After
REGRESSION.HCC1395_tumor.L004,CGA,Context,Base Insertion,55665,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CGA,Context,Base Deletion,55665,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CGC,Context,Base Insertion,79656,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CGC,Context,Base Deletion,79656,6.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CGG,Context,Base Insertion,96983,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CGG,Context,Base Deletion,96983,8.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CGT,Context,Base Insertion,62461,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CGT,Context,Base Deletion,62461,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CT,Context,Base Substitution,836906,407.40,33.00,29.40,3.60,After
REGRESSION.HCC1395_tumor.L004,CTA,Context,Base Insertion,96579,0.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CTA,Context,Base Deletion,96579,8.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CTC,Context,Base Insertion,200945,6.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CTC,Context,Base Deletion,200945,19.70,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,CTG,Context,Base Insertion,292660,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CTG,Context,Base Deletion,292660,13.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CTT,Context,Base Insertion,209162,6.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,CTT,Context,Base Deletion,209162,9.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GA,Context,Base Substitution,700242,997.47,28.00,26.99,1.01,After
REGRESSION.HCC1395_tumor.L004,GAA,Context,Base Insertion,208455,6.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GAA,Context,Base Deletion,208455,9.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GAC,Context,Base Insertion,118023,2.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GAC,Context,Base Deletion,118023,7.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GAG,Context,Base Insertion,206900,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GAG,Context,Base Deletion,206900,11.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GAT,Context,Base Insertion,124686,0.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GAT,Context,Base Deletion,124686,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GC,Context,Base Substitution,658158,1458.12,27.00,26.02,0.98,After
REGRESSION.HCC1395_tumor.L004,GCA,Context,Base Insertion,203520,8.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GCA,Context,Base Deletion,203520,5.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GCC,Context,Base Insertion,197882,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GCC,Context,Base Deletion,197882,10.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GCG,Context,Base Insertion,48765,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GCG,Context,Base Deletion,48765,4.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GCT,Context,Base Insertion,207794,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GCT,Context,Base Deletion,207794,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GG,Context,Base Substitution,785379,747.10,30.00,27.76,2.24,After
REGRESSION.HCC1395_tumor.L004,GGA,Context,Base Insertion,213689,15.81,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,GGA,Context,Base Deletion,213689,13.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GGC,Context,Base Insertion,195091,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GGC,Context,Base Deletion,195091,4.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GGG,Context,Base Insertion,217103,12.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GGG,Context,Base Deletion,217103,30.10,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,GGT,Context,Base Insertion,157078,2.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GGT,Context,Base Deletion,157078,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GT,Context,Base Substitution,588344,1053.44,27.00,27.00,-0.00,After
REGRESSION.HCC1395_tumor.L004,GTA,Context,Base Insertion,101343,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GTA,Context,Base Deletion,101343,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GTC,Context,Base Insertion,126499,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GTC,Context,Base Deletion,126499,5.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GTG,Context,Base Insertion,199006,15.51,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,GTG,Context,Base Deletion,199006,35.94,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L004,GTT,Context,Base Insertion,149272,4.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,GTT,Context,Base Deletion,149272,13.25,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,TA,Context,Base Substitution,483865,1132.34,26.00,25.56,0.44,After
REGRESSION.HCC1395_tumor.L004,TAA,Context,Base Insertion,150347,10.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TAA,Context,Base Deletion,150347,15.62,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,TAC,Context,Base Insertion,93406,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TAC,Context,Base Deletion,93406,5.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TAG,Context,Base Insertion,95785,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TAG,Context,Base Deletion,95785,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TAT,Context,Base Insertion,128821,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TAT,Context,Base Deletion,128821,4.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TC,Context,Base Substitution,645390,1632.58,26.00,25.60,0.40,After
REGRESSION.HCC1395_tumor.L004,TCA,Context,Base Insertion,195144,5.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TCA,Context,Base Deletion,195144,15.23,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,TCC,Context,Base Insertion,200299,36.22,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L004,TCC,Context,Base Deletion,200299,9.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TCG,Context,Base Insertion,25987,0.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TCG,Context,Base Deletion,25987,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TCT,Context,Base Insertion,222943,6.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TCT,Context,Base Deletion,222943,15.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TG,Context,Base Substitution,841752,349.23,33.00,29.45,3.55,After
REGRESSION.HCC1395_tumor.L004,TGA,Context,Base Insertion,204154,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TGA,Context,Base Deletion,204154,4.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TGC,Context,Base Insertion,188351,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TGC,Context,Base Deletion,188351,6.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TGG,Context,Base Insertion,239513,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TGG,Context,Base Deletion,239513,7.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TGT,Context,Base Insertion,210096,17.07,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,TGT,Context,Base Deletion,210096,38.86,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L004,TT,Context,Base Substitution,841252,915.06,30.00,28.29,1.71,After
REGRESSION.HCC1395_tumor.L004,TTA,Context,Base Insertion,147555,5.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TTA,Context,Base Deletion,147555,9.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TTC,Context,Base Insertion,193087,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TTC,Context,Base Deletion,193087,12.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TTG,Context,Base Insertion,170311,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TTG,Context,Base Deletion,170311,7.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,TTT,Context,Base Insertion,295042,58.28,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L004,TTT,Context,Base Deletion,295042,170.31,38.00,45.00,-7.00,After
REGRESSION.HCC1395_tumor.L004,-1,Cycle,Base Substitution,38400,154.19,24.00,23.44,0.56,After
REGRESSION.HCC1395_tumor.L004,-10,Cycle,Base Substitution,38700,43.82,29.00,27.65,1.35,After
REGRESSION.HCC1395_tumor.L004,-10,Cycle,Base Insertion,38700,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-10,Cycle,Base Deletion,38700,2.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-100,Cycle,Base Substitution,36327,77.24,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L004,-100,Cycle,Base Insertion,36049,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-100,Cycle,Base Deletion,36049,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-101,Cycle,Base Substitution,36237,75.47,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L004,-101,Cycle,Base Insertion,35937,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-101,Cycle,Base Deletion,35937,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-102,Cycle,Base Substitution,36346,83.04,26.00,26.89,-0.89,After
REGRESSION.HCC1395_tumor.L004,-102,Cycle,Base Insertion,36024,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-102,Cycle,Base Deletion,36024,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-103,Cycle,Base Substitution,36293,67.25,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L004,-103,Cycle,Base Insertion,35944,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-103,Cycle,Base Deletion,35944,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-104,Cycle,Base Substitution,36068,93.86,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L004,-104,Cycle,Base Insertion,35729,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-104,Cycle,Base Deletion,35729,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-105,Cycle,Base Substitution,36047,86.07,26.00,26.58,-0.58,After
REGRESSION.HCC1395_tumor.L004,-105,Cycle,Base Insertion,35730,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-105,Cycle,Base Deletion,35730,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-106,Cycle,Base Substitution,35953,80.27,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L004,-106,Cycle,Base Insertion,35624,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-106,Cycle,Base Deletion,35624,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-107,Cycle,Base Substitution,35697,77.94,27.00,26.39,0.61,After
REGRESSION.HCC1395_tumor.L004,-107,Cycle,Base Insertion,35387,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-107,Cycle,Base Deletion,35387,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-108,Cycle,Base Substitution,35697,72.11,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L004,-108,Cycle,Base Insertion,35384,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-108,Cycle,Base Deletion,35384,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-109,Cycle,Base Substitution,35613,84.37,26.00,26.45,-0.45,After
REGRESSION.HCC1395_tumor.L004,-109,Cycle,Base Insertion,35286,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-109,Cycle,Base Deletion,35286,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-11,Cycle,Base Substitution,38633,47.59,28.00,27.61,0.39,After
REGRESSION.HCC1395_tumor.L004,-11,Cycle,Base Insertion,38632,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-11,Cycle,Base Deletion,38632,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-110,Cycle,Base Substitution,35493,79.85,26.00,26.41,-0.41,After
REGRESSION.HCC1395_tumor.L004,-110,Cycle,Base Insertion,35144,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-110,Cycle,Base Deletion,35144,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-111,Cycle,Base Substitution,35501,81.54,26.00,26.65,-0.65,After
REGRESSION.HCC1395_tumor.L004,-111,Cycle,Base Insertion,35157,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-111,Cycle,Base Deletion,35157,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-112,Cycle,Base Substitution,35401,87.58,26.00,26.28,-0.28,After
REGRESSION.HCC1395_tumor.L004,-112,Cycle,Base Insertion,35071,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-112,Cycle,Base Deletion,35071,4.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-113,Cycle,Base Substitution,35196,75.22,27.00,26.30,0.70,After
REGRESSION.HCC1395_tumor.L004,-113,Cycle,Base Insertion,34847,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-113,Cycle,Base Deletion,34847,5.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-114,Cycle,Base Substitution,35262,76.58,27.00,26.44,0.56,After
REGRESSION.HCC1395_tumor.L004,-114,Cycle,Base Insertion,34933,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-114,Cycle,Base Deletion,34933,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-115,Cycle,Base Substitution,35076,84.52,26.00,26.47,-0.47,After
REGRESSION.HCC1395_tumor.L004,-115,Cycle,Base Insertion,34726,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-115,Cycle,Base Deletion,34726,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-116,Cycle,Base Substitution,35083,76.16,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L004,-116,Cycle,Base Insertion,34749,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-116,Cycle,Base Deletion,34749,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-117,Cycle,Base Substitution,34835,93.43,26.00,26.41,-0.41,After
REGRESSION.HCC1395_tumor.L004,-117,Cycle,Base Insertion,34499,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-117,Cycle,Base Deletion,34499,3.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-118,Cycle,Base Substitution,34891,82.62,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L004,-118,Cycle,Base Insertion,34573,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-118,Cycle,Base Deletion,34573,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-119,Cycle,Base Substitution,34925,97.20,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L004,-119,Cycle,Base Insertion,34603,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-119,Cycle,Base Deletion,34603,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-12,Cycle,Base Substitution,38731,47.71,28.00,27.74,0.26,After
REGRESSION.HCC1395_tumor.L004,-12,Cycle,Base Insertion,38730,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-12,Cycle,Base Deletion,38730,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-120,Cycle,Base Substitution,34722,88.57,26.00,26.41,-0.41,After
REGRESSION.HCC1395_tumor.L004,-120,Cycle,Base Insertion,34382,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-120,Cycle,Base Deletion,34382,2.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-121,Cycle,Base Substitution,34563,67.39,27.00,26.39,0.61,After
REGRESSION.HCC1395_tumor.L004,-121,Cycle,Base Insertion,34212,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-121,Cycle,Base Deletion,34212,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-122,Cycle,Base Substitution,34623,92.29,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L004,-122,Cycle,Base Insertion,34248,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-122,Cycle,Base Deletion,34248,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-123,Cycle,Base Substitution,34483,87.16,26.00,26.26,-0.26,After
REGRESSION.HCC1395_tumor.L004,-123,Cycle,Base Insertion,34070,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-123,Cycle,Base Deletion,34070,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-124,Cycle,Base Substitution,34429,79.89,26.00,26.41,-0.41,After
REGRESSION.HCC1395_tumor.L004,-124,Cycle,Base Insertion,34009,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-124,Cycle,Base Deletion,34009,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-125,Cycle,Base Substitution,34220,78.51,26.00,26.35,-0.35,After
REGRESSION.HCC1395_tumor.L004,-125,Cycle,Base Insertion,33795,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-125,Cycle,Base Deletion,33795,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-126,Cycle,Base Substitution,34172,81.70,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L004,-126,Cycle,Base Insertion,33742,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-126,Cycle,Base Deletion,33742,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-127,Cycle,Base Substitution,34114,78.16,26.00,26.44,-0.44,After
REGRESSION.HCC1395_tumor.L004,-127,Cycle,Base Insertion,33690,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-127,Cycle,Base Deletion,33690,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-128,Cycle,Base Substitution,33945,79.16,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L004,-128,Cycle,Base Insertion,33534,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-128,Cycle,Base Deletion,33534,2.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-129,Cycle,Base Substitution,33862,89.89,26.00,26.40,-0.40,After
REGRESSION.HCC1395_tumor.L004,-129,Cycle,Base Insertion,33429,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-129,Cycle,Base Deletion,33429,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-13,Cycle,Base Substitution,38700,54.55,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L004,-13,Cycle,Base Insertion,38699,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-13,Cycle,Base Deletion,38699,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-130,Cycle,Base Substitution,33747,78.56,26.00,26.04,-0.04,After
REGRESSION.HCC1395_tumor.L004,-130,Cycle,Base Insertion,33354,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-130,Cycle,Base Deletion,33354,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-131,Cycle,Base Substitution,33609,68.22,27.00,26.27,0.73,After
REGRESSION.HCC1395_tumor.L004,-131,Cycle,Base Insertion,33207,2.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-131,Cycle,Base Deletion,33207,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-132,Cycle,Base Substitution,33581,67.76,27.00,26.33,0.67,After
REGRESSION.HCC1395_tumor.L004,-132,Cycle,Base Insertion,33168,0.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-132,Cycle,Base Deletion,33168,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-133,Cycle,Base Substitution,33444,85.24,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L004,-133,Cycle,Base Insertion,33030,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-133,Cycle,Base Deletion,33030,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-134,Cycle,Base Substitution,33409,71.45,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L004,-134,Cycle,Base Insertion,32983,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-134,Cycle,Base Deletion,32983,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-135,Cycle,Base Substitution,33218,80.50,26.00,26.48,-0.48,After
REGRESSION.HCC1395_tumor.L004,-135,Cycle,Base Insertion,32792,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-135,Cycle,Base Deletion,32792,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-136,Cycle,Base Substitution,33136,73.52,26.00,26.41,-0.41,After
REGRESSION.HCC1395_tumor.L004,-136,Cycle,Base Insertion,32717,0.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-136,Cycle,Base Deletion,32717,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-137,Cycle,Base Substitution,33071,78.75,26.00,26.49,-0.49,After
REGRESSION.HCC1395_tumor.L004,-137,Cycle,Base Insertion,32633,0.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-137,Cycle,Base Deletion,32633,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-138,Cycle,Base Substitution,32897,70.45,27.00,26.28,0.72,After
REGRESSION.HCC1395_tumor.L004,-138,Cycle,Base Insertion,32476,0.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-138,Cycle,Base Deletion,32476,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-139,Cycle,Base Substitution,32836,85.36,26.00,26.01,-0.01,After
REGRESSION.HCC1395_tumor.L004,-139,Cycle,Base Insertion,32375,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-139,Cycle,Base Deletion,32375,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-14,Cycle,Base Substitution,38628,55.77,28.00,27.88,0.12,After
REGRESSION.HCC1395_tumor.L004,-14,Cycle,Base Insertion,38627,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-14,Cycle,Base Deletion,38627,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-140,Cycle,Base Substitution,32670,71.08,27.00,26.22,0.78,After
REGRESSION.HCC1395_tumor.L004,-140,Cycle,Base Insertion,32182,0.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-140,Cycle,Base Deletion,32182,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-141,Cycle,Base Substitution,32577,79.58,26.00,26.41,-0.41,After
REGRESSION.HCC1395_tumor.L004,-141,Cycle,Base Insertion,32045,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-141,Cycle,Base Deletion,32045,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-142,Cycle,Base Substitution,32579,67.99,27.00,26.38,0.62,After
REGRESSION.HCC1395_tumor.L004,-142,Cycle,Base Insertion,31981,0.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-142,Cycle,Base Deletion,31981,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-143,Cycle,Base Substitution,32332,79.26,26.00,26.29,-0.29,After
REGRESSION.HCC1395_tumor.L004,-143,Cycle,Base Insertion,31686,0.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-143,Cycle,Base Deletion,31686,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-144,Cycle,Base Substitution,32254,71.91,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L004,-144,Cycle,Base Insertion,31565,0.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-144,Cycle,Base Deletion,31565,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-145,Cycle,Base Substitution,32211,58.05,27.00,26.22,0.78,After
REGRESSION.HCC1395_tumor.L004,-145,Cycle,Base Insertion,24817,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-145,Cycle,Base Deletion,24817,0.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-146,Cycle,Base Substitution,32029,22.92,28.00,26.11,1.89,After
REGRESSION.HCC1395_tumor.L004,-146,Cycle,Base Insertion,24770,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-146,Cycle,Base Deletion,24770,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-147,Cycle,Base Substitution,31809,19.76,26.00,22.36,3.64,After
REGRESSION.HCC1395_tumor.L004,-148,Cycle,Base Substitution,31532,26.02,24.00,16.13,7.87,After
REGRESSION.HCC1395_tumor.L004,-149,Cycle,Base Substitution,19716,27.84,21.00,14.18,6.82,After
REGRESSION.HCC1395_tumor.L004,-15,Cycle,Base Substitution,38726,36.05,29.00,27.89,1.11,After
REGRESSION.HCC1395_tumor.L004,-15,Cycle,Base Insertion,38726,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-15,Cycle,Base Deletion,38726,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-150,Cycle,Base Substitution,6853,23.87,25.00,25.86,-0.86,After
REGRESSION.HCC1395_tumor.L004,-16,Cycle,Base Substitution,38757,55.77,28.00,27.83,0.17,After
REGRESSION.HCC1395_tumor.L004,-16,Cycle,Base Insertion,38757,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-16,Cycle,Base Deletion,38757,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-17,Cycle,Base Substitution,38665,49.25,28.00,27.80,0.20,After
REGRESSION.HCC1395_tumor.L004,-17,Cycle,Base Insertion,38665,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-17,Cycle,Base Deletion,38665,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-18,Cycle,Base Substitution,38513,53.45,28.00,27.92,0.08,After
REGRESSION.HCC1395_tumor.L004,-18,Cycle,Base Insertion,38513,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-18,Cycle,Base Deletion,38513,5.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-19,Cycle,Base Substitution,38588,63.62,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L004,-19,Cycle,Base Insertion,38588,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-19,Cycle,Base Deletion,38588,4.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-2,Cycle,Base Substitution,38820,122.32,25.00,25.73,-0.73,After
REGRESSION.HCC1395_tumor.L004,-20,Cycle,Base Substitution,38599,65.46,28.00,27.99,0.01,After
REGRESSION.HCC1395_tumor.L004,-20,Cycle,Base Insertion,38599,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-20,Cycle,Base Deletion,38599,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-21,Cycle,Base Substitution,38589,45.95,28.00,27.83,0.17,After
REGRESSION.HCC1395_tumor.L004,-21,Cycle,Base Insertion,38589,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-21,Cycle,Base Deletion,38589,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-22,Cycle,Base Substitution,38635,42.22,29.00,27.91,1.09,After
REGRESSION.HCC1395_tumor.L004,-22,Cycle,Base Insertion,38635,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-22,Cycle,Base Deletion,38635,4.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-23,Cycle,Base Substitution,38689,59.42,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L004,-23,Cycle,Base Insertion,38689,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-23,Cycle,Base Deletion,38689,4.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-24,Cycle,Base Substitution,38576,51.19,28.00,27.79,0.21,After
REGRESSION.HCC1395_tumor.L004,-24,Cycle,Base Insertion,38576,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-24,Cycle,Base Deletion,38576,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-25,Cycle,Base Substitution,38523,50.05,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L004,-25,Cycle,Base Insertion,38523,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-25,Cycle,Base Deletion,38523,4.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-26,Cycle,Base Substitution,38518,50.37,28.00,26.85,1.15,After
REGRESSION.HCC1395_tumor.L004,-26,Cycle,Base Insertion,38518,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-26,Cycle,Base Deletion,38518,4.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-27,Cycle,Base Substitution,38592,53.73,28.00,26.84,1.16,After
REGRESSION.HCC1395_tumor.L004,-27,Cycle,Base Insertion,38592,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-27,Cycle,Base Deletion,38592,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-28,Cycle,Base Substitution,38512,57.30,28.00,27.06,0.94,After
REGRESSION.HCC1395_tumor.L004,-28,Cycle,Base Insertion,38510,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-28,Cycle,Base Deletion,38510,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-29,Cycle,Base Substitution,38591,61.26,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L004,-29,Cycle,Base Insertion,38586,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-29,Cycle,Base Deletion,38586,4.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-3,Cycle,Base Substitution,38904,133.12,25.00,26.18,-1.18,After
REGRESSION.HCC1395_tumor.L004,-30,Cycle,Base Substitution,38626,58.07,28.00,26.94,1.06,After
REGRESSION.HCC1395_tumor.L004,-30,Cycle,Base Insertion,38620,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-30,Cycle,Base Deletion,38620,5.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-31,Cycle,Base Substitution,38503,65.59,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L004,-31,Cycle,Base Insertion,38498,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-31,Cycle,Base Deletion,38498,5.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-32,Cycle,Base Substitution,38609,44.53,28.00,27.38,0.62,After
REGRESSION.HCC1395_tumor.L004,-32,Cycle,Base Insertion,38605,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-32,Cycle,Base Deletion,38605,5.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-33,Cycle,Base Substitution,38455,46.89,28.00,26.86,1.14,After
REGRESSION.HCC1395_tumor.L004,-33,Cycle,Base Insertion,38452,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-33,Cycle,Base Deletion,38452,4.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-34,Cycle,Base Substitution,38460,41.53,29.00,27.06,1.94,After
REGRESSION.HCC1395_tumor.L004,-34,Cycle,Base Insertion,38458,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-34,Cycle,Base Deletion,38458,4.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-35,Cycle,Base Substitution,38525,60.62,28.00,27.19,0.81,After
REGRESSION.HCC1395_tumor.L004,-35,Cycle,Base Insertion,38521,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-35,Cycle,Base Deletion,38521,4.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-36,Cycle,Base Substitution,38535,57.18,28.00,26.79,1.21,After
REGRESSION.HCC1395_tumor.L004,-36,Cycle,Base Insertion,38529,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-36,Cycle,Base Deletion,38529,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-37,Cycle,Base Substitution,38387,61.26,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L004,-37,Cycle,Base Insertion,38381,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-37,Cycle,Base Deletion,38381,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-38,Cycle,Base Substitution,38417,58.84,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L004,-38,Cycle,Base Insertion,38411,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-38,Cycle,Base Deletion,38411,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-39,Cycle,Base Substitution,38442,67.44,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L004,-39,Cycle,Base Insertion,38437,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-39,Cycle,Base Deletion,38437,4.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-4,Cycle,Base Substitution,38798,89.32,26.00,26.14,-0.14,After
REGRESSION.HCC1395_tumor.L004,-40,Cycle,Base Substitution,38394,58.30,28.00,26.97,1.03,After
REGRESSION.HCC1395_tumor.L004,-40,Cycle,Base Insertion,38388,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-40,Cycle,Base Deletion,38388,4.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-41,Cycle,Base Substitution,38328,67.55,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L004,-41,Cycle,Base Insertion,38323,3.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-41,Cycle,Base Deletion,38323,4.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-42,Cycle,Base Substitution,38262,68.18,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L004,-42,Cycle,Base Insertion,38259,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-42,Cycle,Base Deletion,38259,4.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-43,Cycle,Base Substitution,38295,43.97,29.00,27.36,1.64,After
REGRESSION.HCC1395_tumor.L004,-43,Cycle,Base Insertion,38288,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-43,Cycle,Base Deletion,38288,4.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-44,Cycle,Base Substitution,38313,50.61,28.00,26.98,1.02,After
REGRESSION.HCC1395_tumor.L004,-44,Cycle,Base Insertion,38307,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-44,Cycle,Base Deletion,38307,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-45,Cycle,Base Substitution,38341,44.25,28.00,26.91,1.09,After
REGRESSION.HCC1395_tumor.L004,-45,Cycle,Base Insertion,38336,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-45,Cycle,Base Deletion,38336,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-46,Cycle,Base Substitution,38298,46.50,28.00,27.30,0.70,After
REGRESSION.HCC1395_tumor.L004,-46,Cycle,Base Insertion,38295,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-46,Cycle,Base Deletion,38295,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-47,Cycle,Base Substitution,38275,61.70,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L004,-47,Cycle,Base Insertion,38266,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-47,Cycle,Base Deletion,38266,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-48,Cycle,Base Substitution,38318,58.72,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L004,-48,Cycle,Base Insertion,38308,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-48,Cycle,Base Deletion,38308,4.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-49,Cycle,Base Substitution,38355,54.83,28.00,26.83,1.17,After
REGRESSION.HCC1395_tumor.L004,-49,Cycle,Base Insertion,38344,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-49,Cycle,Base Deletion,38344,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-5,Cycle,Base Substitution,38884,56.81,28.00,27.12,0.88,After
REGRESSION.HCC1395_tumor.L004,-5,Cycle,Base Insertion,38884,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-5,Cycle,Base Deletion,38884,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-50,Cycle,Base Substitution,38298,52.56,28.00,26.99,1.01,After
REGRESSION.HCC1395_tumor.L004,-50,Cycle,Base Insertion,38282,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-50,Cycle,Base Deletion,38282,4.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-51,Cycle,Base Substitution,38187,60.98,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L004,-51,Cycle,Base Insertion,38176,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-51,Cycle,Base Deletion,38176,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-52,Cycle,Base Substitution,38143,53.63,28.00,26.88,1.12,After
REGRESSION.HCC1395_tumor.L004,-52,Cycle,Base Insertion,38130,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-52,Cycle,Base Deletion,38130,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-53,Cycle,Base Substitution,38298,47.40,28.00,27.23,0.77,After
REGRESSION.HCC1395_tumor.L004,-53,Cycle,Base Insertion,38280,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-53,Cycle,Base Deletion,38280,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-54,Cycle,Base Substitution,38208,66.40,27.00,26.91,0.09,After
REGRESSION.HCC1395_tumor.L004,-54,Cycle,Base Insertion,38183,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-54,Cycle,Base Deletion,38183,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-55,Cycle,Base Substitution,38125,68.85,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L004,-55,Cycle,Base Insertion,38090,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-55,Cycle,Base Deletion,38090,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-56,Cycle,Base Substitution,38265,64.43,28.00,27.24,0.76,After
REGRESSION.HCC1395_tumor.L004,-56,Cycle,Base Insertion,38213,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-56,Cycle,Base Deletion,38213,4.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-57,Cycle,Base Substitution,38165,58.44,28.00,27.04,0.96,After
REGRESSION.HCC1395_tumor.L004,-57,Cycle,Base Insertion,38104,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-57,Cycle,Base Deletion,38104,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-58,Cycle,Base Substitution,38244,60.09,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L004,-58,Cycle,Base Insertion,38179,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-58,Cycle,Base Deletion,38179,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-59,Cycle,Base Substitution,38215,69.40,27.00,27.00,-0.00,After
REGRESSION.HCC1395_tumor.L004,-59,Cycle,Base Insertion,38151,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-59,Cycle,Base Deletion,38151,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-6,Cycle,Base Substitution,38727,70.18,27.00,26.96,0.04,After
REGRESSION.HCC1395_tumor.L004,-6,Cycle,Base Insertion,38727,0.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-6,Cycle,Base Deletion,38727,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-60,Cycle,Base Substitution,38163,50.88,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L004,-60,Cycle,Base Insertion,38099,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-60,Cycle,Base Deletion,38099,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-61,Cycle,Base Substitution,38093,58.46,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L004,-61,Cycle,Base Insertion,38026,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-61,Cycle,Base Deletion,38026,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-62,Cycle,Base Substitution,38194,80.23,27.00,26.38,0.62,After
REGRESSION.HCC1395_tumor.L004,-62,Cycle,Base Insertion,38129,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-62,Cycle,Base Deletion,38129,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-63,Cycle,Base Substitution,38122,69.10,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L004,-63,Cycle,Base Insertion,38051,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-63,Cycle,Base Deletion,38051,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-64,Cycle,Base Substitution,38151,50.12,28.00,27.34,0.66,After
REGRESSION.HCC1395_tumor.L004,-64,Cycle,Base Insertion,38079,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-64,Cycle,Base Deletion,38079,4.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-65,Cycle,Base Substitution,38202,62.38,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L004,-65,Cycle,Base Insertion,38128,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-65,Cycle,Base Deletion,38128,5.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-66,Cycle,Base Substitution,38137,63.93,28.00,27.20,0.80,After
REGRESSION.HCC1395_tumor.L004,-66,Cycle,Base Insertion,38062,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-66,Cycle,Base Deletion,38062,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-67,Cycle,Base Substitution,38112,63.81,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L004,-67,Cycle,Base Insertion,38008,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-67,Cycle,Base Deletion,38008,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-68,Cycle,Base Substitution,38063,73.37,27.00,27.02,-0.02,After
REGRESSION.HCC1395_tumor.L004,-68,Cycle,Base Insertion,37947,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-68,Cycle,Base Deletion,37947,3.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-69,Cycle,Base Substitution,38017,69.07,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L004,-69,Cycle,Base Insertion,37903,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-69,Cycle,Base Deletion,37903,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-7,Cycle,Base Substitution,38556,71.26,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L004,-7,Cycle,Base Insertion,38556,0.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-7,Cycle,Base Deletion,38556,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-70,Cycle,Base Substitution,37988,77.09,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L004,-70,Cycle,Base Insertion,37872,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-70,Cycle,Base Deletion,37872,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-71,Cycle,Base Substitution,37970,76.28,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L004,-71,Cycle,Base Insertion,37857,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-71,Cycle,Base Deletion,37857,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-72,Cycle,Base Substitution,37890,67.41,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L004,-72,Cycle,Base Insertion,37763,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-72,Cycle,Base Deletion,37763,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-73,Cycle,Base Substitution,37894,66.36,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L004,-73,Cycle,Base Insertion,37746,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-73,Cycle,Base Deletion,37746,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-74,Cycle,Base Substitution,37768,65.10,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L004,-74,Cycle,Base Insertion,37598,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-74,Cycle,Base Deletion,37598,4.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-75,Cycle,Base Substitution,37924,62.25,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L004,-75,Cycle,Base Insertion,37751,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-75,Cycle,Base Deletion,37751,5.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-76,Cycle,Base Substitution,37882,54.61,28.00,26.94,1.06,After
REGRESSION.HCC1395_tumor.L004,-76,Cycle,Base Insertion,37723,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-76,Cycle,Base Deletion,37723,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-77,Cycle,Base Substitution,37597,64.98,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L004,-77,Cycle,Base Insertion,37443,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-77,Cycle,Base Deletion,37443,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-78,Cycle,Base Substitution,37568,61.64,28.00,27.24,0.76,After
REGRESSION.HCC1395_tumor.L004,-78,Cycle,Base Insertion,37403,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-78,Cycle,Base Deletion,37403,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-79,Cycle,Base Substitution,37645,76.33,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L004,-79,Cycle,Base Insertion,37467,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-79,Cycle,Base Deletion,37467,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-8,Cycle,Base Substitution,38677,67.79,27.00,27.16,-0.16,After
REGRESSION.HCC1395_tumor.L004,-8,Cycle,Base Insertion,38677,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-8,Cycle,Base Deletion,38677,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-80,Cycle,Base Substitution,37505,67.97,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L004,-80,Cycle,Base Insertion,37332,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-80,Cycle,Base Deletion,37332,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-81,Cycle,Base Substitution,37579,68.55,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L004,-81,Cycle,Base Insertion,37387,0.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-81,Cycle,Base Deletion,37387,3.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-82,Cycle,Base Substitution,37358,74.74,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L004,-82,Cycle,Base Insertion,37155,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-82,Cycle,Base Deletion,37155,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-83,Cycle,Base Substitution,37415,63.62,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L004,-83,Cycle,Base Insertion,37223,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-83,Cycle,Base Deletion,37223,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-84,Cycle,Base Substitution,37373,78.22,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L004,-84,Cycle,Base Insertion,37160,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-84,Cycle,Base Deletion,37160,3.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-85,Cycle,Base Substitution,37395,79.87,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L004,-85,Cycle,Base Insertion,37167,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-85,Cycle,Base Deletion,37167,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-86,Cycle,Base Substitution,37341,74.54,27.00,26.39,0.61,After
REGRESSION.HCC1395_tumor.L004,-86,Cycle,Base Insertion,37108,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-86,Cycle,Base Deletion,37108,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-87,Cycle,Base Substitution,37202,57.71,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L004,-87,Cycle,Base Insertion,36956,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-87,Cycle,Base Deletion,36956,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-88,Cycle,Base Substitution,37199,78.84,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L004,-88,Cycle,Base Insertion,36950,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-88,Cycle,Base Deletion,36950,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-89,Cycle,Base Substitution,37163,77.39,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L004,-89,Cycle,Base Insertion,36913,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-89,Cycle,Base Deletion,36913,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-9,Cycle,Base Substitution,38787,55.52,28.00,27.52,0.48,After
REGRESSION.HCC1395_tumor.L004,-9,Cycle,Base Insertion,38787,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-9,Cycle,Base Deletion,38787,2.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-90,Cycle,Base Substitution,37047,69.40,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L004,-90,Cycle,Base Insertion,36789,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-90,Cycle,Base Deletion,36789,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-91,Cycle,Base Substitution,36972,67.09,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L004,-91,Cycle,Base Insertion,36731,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-91,Cycle,Base Deletion,36731,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-92,Cycle,Base Substitution,36814,84.68,26.00,26.87,-0.87,After
REGRESSION.HCC1395_tumor.L004,-92,Cycle,Base Insertion,36584,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-92,Cycle,Base Deletion,36584,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-93,Cycle,Base Substitution,36871,72.75,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L004,-93,Cycle,Base Insertion,36632,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-93,Cycle,Base Deletion,36632,3.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-94,Cycle,Base Substitution,36831,87.12,26.00,26.02,-0.02,After
REGRESSION.HCC1395_tumor.L004,-94,Cycle,Base Insertion,36593,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-94,Cycle,Base Deletion,36593,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-95,Cycle,Base Substitution,36775,84.08,26.00,26.50,-0.50,After
REGRESSION.HCC1395_tumor.L004,-95,Cycle,Base Insertion,36499,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-95,Cycle,Base Deletion,36499,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-96,Cycle,Base Substitution,36702,82.29,26.00,26.58,-0.58,After
REGRESSION.HCC1395_tumor.L004,-96,Cycle,Base Insertion,36414,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-96,Cycle,Base Deletion,36414,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-97,Cycle,Base Substitution,36545,88.29,26.00,26.52,-0.52,After
REGRESSION.HCC1395_tumor.L004,-97,Cycle,Base Insertion,36262,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-97,Cycle,Base Deletion,36262,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-98,Cycle,Base Substitution,36427,86.50,26.00,26.57,-0.57,After
REGRESSION.HCC1395_tumor.L004,-98,Cycle,Base Insertion,36132,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-98,Cycle,Base Deletion,36132,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-99,Cycle,Base Substitution,36496,76.38,27.00,26.41,0.59,After
REGRESSION.HCC1395_tumor.L004,-99,Cycle,Base Insertion,36219,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,-99,Cycle,Base Deletion,36219,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,1,Cycle,Base Substitution,38400,69.44,27.00,26.15,0.85,After
REGRESSION.HCC1395_tumor.L004,10,Cycle,Base Substitution,38783,47.12,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L004,10,Cycle,Base Insertion,38783,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,10,Cycle,Base Deletion,38783,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,100,Cycle,Base Substitution,36466,65.27,27.00,27.02,-0.02,After
REGRESSION.HCC1395_tumor.L004,100,Cycle,Base Insertion,36187,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,100,Cycle,Base Deletion,36187,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,101,Cycle,Base Substitution,36335,67.43,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L004,101,Cycle,Base Insertion,36031,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,101,Cycle,Base Deletion,36031,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,102,Cycle,Base Substitution,36133,54.62,28.00,27.24,0.76,After
REGRESSION.HCC1395_tumor.L004,102,Cycle,Base Insertion,35809,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,102,Cycle,Base Deletion,35809,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,103,Cycle,Base Substitution,36133,51.16,28.00,27.22,0.78,After
REGRESSION.HCC1395_tumor.L004,103,Cycle,Base Insertion,35803,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,103,Cycle,Base Deletion,35803,3.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,104,Cycle,Base Substitution,36172,64.24,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L004,104,Cycle,Base Insertion,35845,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,104,Cycle,Base Deletion,35845,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,105,Cycle,Base Substitution,35964,64.12,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L004,105,Cycle,Base Insertion,35652,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,105,Cycle,Base Deletion,35652,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,106,Cycle,Base Substitution,35892,77.03,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L004,106,Cycle,Base Insertion,35588,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,106,Cycle,Base Deletion,35588,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,107,Cycle,Base Substitution,35843,74.15,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L004,107,Cycle,Base Insertion,35521,0.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,107,Cycle,Base Deletion,35521,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,108,Cycle,Base Substitution,35662,90.32,26.00,26.20,-0.20,After
REGRESSION.HCC1395_tumor.L004,108,Cycle,Base Insertion,35338,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,108,Cycle,Base Deletion,35338,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,109,Cycle,Base Substitution,35711,65.84,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L004,109,Cycle,Base Insertion,35386,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,109,Cycle,Base Deletion,35386,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,11,Cycle,Base Substitution,38826,36.54,29.00,27.77,1.23,After
REGRESSION.HCC1395_tumor.L004,11,Cycle,Base Insertion,38826,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,11,Cycle,Base Deletion,38826,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,110,Cycle,Base Substitution,35583,71.30,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L004,110,Cycle,Base Insertion,35232,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,110,Cycle,Base Deletion,35232,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,111,Cycle,Base Substitution,35439,65.27,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L004,111,Cycle,Base Insertion,35103,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,111,Cycle,Base Deletion,35103,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,112,Cycle,Base Substitution,35343,55.89,28.00,27.00,1.00,After
REGRESSION.HCC1395_tumor.L004,112,Cycle,Base Insertion,35012,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,112,Cycle,Base Deletion,35012,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,113,Cycle,Base Substitution,35335,54.99,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L004,113,Cycle,Base Insertion,34977,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,113,Cycle,Base Deletion,34977,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,114,Cycle,Base Substitution,35300,57.95,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L004,114,Cycle,Base Insertion,34959,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,114,Cycle,Base Deletion,34959,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,115,Cycle,Base Substitution,35156,71.28,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L004,115,Cycle,Base Insertion,34819,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,115,Cycle,Base Deletion,34819,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,116,Cycle,Base Substitution,35101,72.35,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L004,116,Cycle,Base Insertion,34773,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,116,Cycle,Base Deletion,34773,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,117,Cycle,Base Substitution,34975,75.05,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L004,117,Cycle,Base Insertion,34644,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,117,Cycle,Base Deletion,34644,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,118,Cycle,Base Substitution,34906,59.17,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L004,118,Cycle,Base Insertion,34587,0.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,118,Cycle,Base Deletion,34587,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,119,Cycle,Base Substitution,34812,89.06,26.00,26.72,-0.72,After
REGRESSION.HCC1395_tumor.L004,119,Cycle,Base Insertion,34496,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,119,Cycle,Base Deletion,34496,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,12,Cycle,Base Substitution,38645,37.39,29.00,28.21,0.79,After
REGRESSION.HCC1395_tumor.L004,12,Cycle,Base Insertion,38645,2.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,12,Cycle,Base Deletion,38645,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,120,Cycle,Base Substitution,34798,60.28,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L004,120,Cycle,Base Insertion,34457,0.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,120,Cycle,Base Deletion,34457,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,121,Cycle,Base Substitution,34574,62.73,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L004,121,Cycle,Base Insertion,34221,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,121,Cycle,Base Deletion,34221,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,122,Cycle,Base Substitution,34459,79.24,26.00,26.09,-0.09,After
REGRESSION.HCC1395_tumor.L004,122,Cycle,Base Insertion,34079,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,122,Cycle,Base Deletion,34079,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,123,Cycle,Base Substitution,34454,84.35,26.00,26.79,-0.79,After
REGRESSION.HCC1395_tumor.L004,123,Cycle,Base Insertion,34059,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,123,Cycle,Base Deletion,34059,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,124,Cycle,Base Substitution,34500,68.82,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L004,124,Cycle,Base Insertion,34085,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,124,Cycle,Base Deletion,34085,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,125,Cycle,Base Substitution,34380,75.23,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L004,125,Cycle,Base Insertion,33966,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,125,Cycle,Base Deletion,33966,4.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,126,Cycle,Base Substitution,34283,77.28,26.00,26.07,-0.07,After
REGRESSION.HCC1395_tumor.L004,126,Cycle,Base Insertion,33876,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,126,Cycle,Base Deletion,33876,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,127,Cycle,Base Substitution,34207,69.10,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L004,127,Cycle,Base Insertion,33810,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,127,Cycle,Base Deletion,33810,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,128,Cycle,Base Substitution,34080,58.53,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L004,128,Cycle,Base Insertion,33674,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,128,Cycle,Base Deletion,33674,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,129,Cycle,Base Substitution,33933,70.14,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L004,129,Cycle,Base Insertion,33538,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,129,Cycle,Base Deletion,33538,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,13,Cycle,Base Substitution,38676,55.06,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L004,13,Cycle,Base Insertion,38676,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,13,Cycle,Base Deletion,38676,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,130,Cycle,Base Substitution,33882,68.36,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L004,130,Cycle,Base Insertion,33480,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,130,Cycle,Base Deletion,33480,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,131,Cycle,Base Substitution,33629,67.14,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L004,131,Cycle,Base Insertion,33226,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,131,Cycle,Base Deletion,33226,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,132,Cycle,Base Substitution,33541,54.89,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L004,132,Cycle,Base Insertion,33134,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,132,Cycle,Base Deletion,33134,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,133,Cycle,Base Substitution,33475,65.54,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L004,133,Cycle,Base Insertion,33071,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,133,Cycle,Base Deletion,33071,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,134,Cycle,Base Substitution,33470,67.52,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L004,134,Cycle,Base Insertion,33048,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,134,Cycle,Base Deletion,33048,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,135,Cycle,Base Substitution,33315,76.61,26.00,26.61,-0.61,After
REGRESSION.HCC1395_tumor.L004,135,Cycle,Base Insertion,32903,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,135,Cycle,Base Deletion,32903,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,136,Cycle,Base Substitution,33288,60.12,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L004,136,Cycle,Base Insertion,32870,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,136,Cycle,Base Deletion,32870,2.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,137,Cycle,Base Substitution,33255,59.01,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L004,137,Cycle,Base Insertion,32842,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,137,Cycle,Base Deletion,32842,2.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,138,Cycle,Base Substitution,33048,66.42,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L004,138,Cycle,Base Insertion,32647,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,138,Cycle,Base Deletion,32647,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,139,Cycle,Base Substitution,33016,76.90,26.00,26.51,-0.51,After
REGRESSION.HCC1395_tumor.L004,139,Cycle,Base Insertion,32607,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,139,Cycle,Base Deletion,32607,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,14,Cycle,Base Substitution,38725,51.81,28.00,27.93,0.07,After
REGRESSION.HCC1395_tumor.L004,14,Cycle,Base Insertion,38725,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,14,Cycle,Base Deletion,38725,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,140,Cycle,Base Substitution,32914,74.20,26.00,26.53,-0.53,After
REGRESSION.HCC1395_tumor.L004,140,Cycle,Base Insertion,32505,0.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,140,Cycle,Base Deletion,32505,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,141,Cycle,Base Substitution,32785,72.06,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L004,141,Cycle,Base Insertion,32365,0.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,141,Cycle,Base Deletion,32365,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,142,Cycle,Base Substitution,32652,64.97,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L004,142,Cycle,Base Insertion,32182,0.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,142,Cycle,Base Deletion,32182,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,143,Cycle,Base Substitution,32559,64.45,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L004,143,Cycle,Base Insertion,32118,0.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,143,Cycle,Base Deletion,32118,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,144,Cycle,Base Substitution,32510,59.75,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L004,144,Cycle,Base Insertion,32068,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,144,Cycle,Base Deletion,32068,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,145,Cycle,Base Substitution,32380,56.76,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L004,145,Cycle,Base Insertion,31945,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,145,Cycle,Base Deletion,31945,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,146,Cycle,Base Substitution,32198,73.89,26.00,26.53,-0.53,After
REGRESSION.HCC1395_tumor.L004,146,Cycle,Base Insertion,31801,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,146,Cycle,Base Deletion,31801,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,147,Cycle,Base Substitution,32223,69.61,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L004,148,Cycle,Base Substitution,31966,100.59,25.00,26.43,-1.43,After
REGRESSION.HCC1395_tumor.L004,149,Cycle,Base Substitution,31962,78.68,26.00,26.46,-0.46,After
REGRESSION.HCC1395_tumor.L004,15,Cycle,Base Substitution,38716,42.37,29.00,27.88,1.12,After
REGRESSION.HCC1395_tumor.L004,15,Cycle,Base Insertion,38716,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,15,Cycle,Base Deletion,38716,2.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,150,Cycle,Base Substitution,31856,85.13,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L004,16,Cycle,Base Substitution,38815,37.00,29.00,28.89,0.11,After
REGRESSION.HCC1395_tumor.L004,16,Cycle,Base Insertion,38815,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,16,Cycle,Base Deletion,38815,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,17,Cycle,Base Substitution,38670,25.73,30.00,28.64,1.36,After
REGRESSION.HCC1395_tumor.L004,17,Cycle,Base Insertion,38670,5.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,17,Cycle,Base Deletion,38670,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,18,Cycle,Base Substitution,38751,21.11,30.00,28.84,1.16,After
REGRESSION.HCC1395_tumor.L004,18,Cycle,Base Insertion,38751,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,18,Cycle,Base Deletion,38751,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,19,Cycle,Base Substitution,38711,29.84,30.00,28.67,1.33,After
REGRESSION.HCC1395_tumor.L004,19,Cycle,Base Insertion,38711,2.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,19,Cycle,Base Deletion,38711,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,2,Cycle,Base Substitution,38967,86.39,27.00,27.28,-0.28,After
REGRESSION.HCC1395_tumor.L004,20,Cycle,Base Substitution,38696,30.54,30.00,28.77,1.23,After
REGRESSION.HCC1395_tumor.L004,20,Cycle,Base Insertion,38696,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,20,Cycle,Base Deletion,38696,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,21,Cycle,Base Substitution,38684,37.40,29.00,28.63,0.37,After
REGRESSION.HCC1395_tumor.L004,21,Cycle,Base Insertion,38684,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,21,Cycle,Base Deletion,38684,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,22,Cycle,Base Substitution,38701,29.47,30.00,28.99,1.01,After
REGRESSION.HCC1395_tumor.L004,22,Cycle,Base Insertion,38701,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,22,Cycle,Base Deletion,38701,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,23,Cycle,Base Substitution,38675,33.52,29.00,28.76,0.24,After
REGRESSION.HCC1395_tumor.L004,23,Cycle,Base Insertion,38675,4.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,23,Cycle,Base Deletion,38675,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,24,Cycle,Base Substitution,38700,35.68,29.00,28.82,0.18,After
REGRESSION.HCC1395_tumor.L004,24,Cycle,Base Insertion,38700,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,24,Cycle,Base Deletion,38700,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,25,Cycle,Base Substitution,38580,26.90,30.00,28.82,1.18,After
REGRESSION.HCC1395_tumor.L004,25,Cycle,Base Insertion,38580,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,25,Cycle,Base Deletion,38580,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,26,Cycle,Base Substitution,38674,38.65,29.00,27.90,1.10,After
REGRESSION.HCC1395_tumor.L004,26,Cycle,Base Insertion,38673,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,26,Cycle,Base Deletion,38673,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,27,Cycle,Base Substitution,38625,39.95,29.00,27.75,1.25,After
REGRESSION.HCC1395_tumor.L004,27,Cycle,Base Insertion,38623,2.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,27,Cycle,Base Deletion,38623,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,28,Cycle,Base Substitution,38583,38.01,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L004,28,Cycle,Base Insertion,38581,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,28,Cycle,Base Deletion,38581,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,29,Cycle,Base Substitution,38597,30.53,30.00,28.31,1.69,After
REGRESSION.HCC1395_tumor.L004,29,Cycle,Base Insertion,38596,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,29,Cycle,Base Deletion,38596,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,3,Cycle,Base Substitution,38846,103.41,26.00,27.32,-1.32,After
REGRESSION.HCC1395_tumor.L004,30,Cycle,Base Substitution,38466,45.48,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L004,30,Cycle,Base Insertion,38462,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,30,Cycle,Base Deletion,38462,5.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,31,Cycle,Base Substitution,38568,41.48,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L004,31,Cycle,Base Insertion,38564,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,31,Cycle,Base Deletion,38564,5.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,32,Cycle,Base Substitution,38658,56.73,28.00,27.88,0.12,After
REGRESSION.HCC1395_tumor.L004,32,Cycle,Base Insertion,38653,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,32,Cycle,Base Deletion,38653,4.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,33,Cycle,Base Substitution,38463,34.80,29.00,27.81,1.19,After
REGRESSION.HCC1395_tumor.L004,33,Cycle,Base Insertion,38458,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,33,Cycle,Base Deletion,38458,5.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,34,Cycle,Base Substitution,38499,36.54,29.00,27.93,1.07,After
REGRESSION.HCC1395_tumor.L004,34,Cycle,Base Insertion,38497,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,34,Cycle,Base Deletion,38497,4.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,35,Cycle,Base Substitution,38348,36.83,29.00,27.93,1.07,After
REGRESSION.HCC1395_tumor.L004,35,Cycle,Base Insertion,38345,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,35,Cycle,Base Deletion,38345,4.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,36,Cycle,Base Substitution,38490,50.22,29.00,28.05,0.95,After
REGRESSION.HCC1395_tumor.L004,36,Cycle,Base Insertion,38488,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,36,Cycle,Base Deletion,38488,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,37,Cycle,Base Substitution,38541,40.19,29.00,27.84,1.16,After
REGRESSION.HCC1395_tumor.L004,37,Cycle,Base Insertion,38536,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,37,Cycle,Base Deletion,38536,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,38,Cycle,Base Substitution,38500,49.03,28.00,27.95,0.05,After
REGRESSION.HCC1395_tumor.L004,38,Cycle,Base Insertion,38496,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,38,Cycle,Base Deletion,38496,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,39,Cycle,Base Substitution,38445,40.29,29.00,27.82,1.18,After
REGRESSION.HCC1395_tumor.L004,39,Cycle,Base Insertion,38439,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,39,Cycle,Base Deletion,38439,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,4,Cycle,Base Substitution,38753,61.95,28.00,27.30,0.70,After
REGRESSION.HCC1395_tumor.L004,40,Cycle,Base Substitution,38453,43.67,29.00,27.87,1.13,After
REGRESSION.HCC1395_tumor.L004,40,Cycle,Base Insertion,38446,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,40,Cycle,Base Deletion,38446,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,41,Cycle,Base Substitution,38464,47.18,28.00,27.81,0.19,After
REGRESSION.HCC1395_tumor.L004,41,Cycle,Base Insertion,38458,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,41,Cycle,Base Deletion,38458,5.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,42,Cycle,Base Substitution,38328,22.95,30.00,28.37,1.63,After
REGRESSION.HCC1395_tumor.L004,42,Cycle,Base Insertion,38321,4.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,42,Cycle,Base Deletion,38321,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,43,Cycle,Base Substitution,38484,50.95,28.00,27.86,0.14,After
REGRESSION.HCC1395_tumor.L004,43,Cycle,Base Insertion,38479,2.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,43,Cycle,Base Deletion,38479,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,44,Cycle,Base Substitution,38422,39.92,29.00,27.88,1.12,After
REGRESSION.HCC1395_tumor.L004,44,Cycle,Base Insertion,38417,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,44,Cycle,Base Deletion,38417,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,45,Cycle,Base Substitution,38253,54.86,28.00,27.90,0.10,After
REGRESSION.HCC1395_tumor.L004,45,Cycle,Base Insertion,38246,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,45,Cycle,Base Deletion,38246,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,46,Cycle,Base Substitution,38467,38.93,29.00,27.87,1.13,After
REGRESSION.HCC1395_tumor.L004,46,Cycle,Base Insertion,38457,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,46,Cycle,Base Deletion,38457,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,47,Cycle,Base Substitution,38325,44.20,29.00,28.39,0.61,After
REGRESSION.HCC1395_tumor.L004,47,Cycle,Base Insertion,38316,2.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,47,Cycle,Base Deletion,38316,4.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,48,Cycle,Base Substitution,38220,44.18,29.00,28.31,0.69,After
REGRESSION.HCC1395_tumor.L004,48,Cycle,Base Insertion,38208,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,48,Cycle,Base Deletion,38208,4.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,49,Cycle,Base Substitution,38342,39.05,29.00,27.78,1.22,After
REGRESSION.HCC1395_tumor.L004,49,Cycle,Base Insertion,38329,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,49,Cycle,Base Deletion,38329,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,5,Cycle,Base Substitution,38861,46.71,28.00,27.88,0.12,After
REGRESSION.HCC1395_tumor.L004,5,Cycle,Base Insertion,38861,2.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,5,Cycle,Base Deletion,38861,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,50,Cycle,Base Substitution,38344,49.10,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L004,50,Cycle,Base Insertion,38332,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,50,Cycle,Base Deletion,38332,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,51,Cycle,Base Substitution,38308,65.03,28.00,27.59,0.41,After
REGRESSION.HCC1395_tumor.L004,51,Cycle,Base Insertion,38294,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,51,Cycle,Base Deletion,38294,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,52,Cycle,Base Substitution,38312,45.72,28.00,27.88,0.12,After
REGRESSION.HCC1395_tumor.L004,52,Cycle,Base Insertion,38295,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,52,Cycle,Base Deletion,38295,4.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,53,Cycle,Base Substitution,38299,51.62,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L004,53,Cycle,Base Insertion,38277,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,53,Cycle,Base Deletion,38277,5.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,54,Cycle,Base Substitution,38211,47.96,28.00,27.64,0.36,After
REGRESSION.HCC1395_tumor.L004,54,Cycle,Base Insertion,38189,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,54,Cycle,Base Deletion,38189,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,55,Cycle,Base Substitution,38266,54.82,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L004,55,Cycle,Base Insertion,38230,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,55,Cycle,Base Deletion,38230,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,56,Cycle,Base Substitution,38297,41.64,29.00,27.86,1.14,After
REGRESSION.HCC1395_tumor.L004,56,Cycle,Base Insertion,38246,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,56,Cycle,Base Deletion,38246,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,57,Cycle,Base Substitution,38212,62.55,28.00,27.68,0.32,After
REGRESSION.HCC1395_tumor.L004,57,Cycle,Base Insertion,38162,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,57,Cycle,Base Deletion,38162,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,58,Cycle,Base Substitution,38144,45.40,29.00,28.06,0.94,After
REGRESSION.HCC1395_tumor.L004,58,Cycle,Base Insertion,38088,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,58,Cycle,Base Deletion,38088,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,59,Cycle,Base Substitution,38193,47.02,28.00,27.88,0.12,After
REGRESSION.HCC1395_tumor.L004,59,Cycle,Base Insertion,38133,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,59,Cycle,Base Deletion,38133,4.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,6,Cycle,Base Substitution,38720,42.51,29.00,27.72,1.28,After
REGRESSION.HCC1395_tumor.L004,6,Cycle,Base Insertion,38720,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,6,Cycle,Base Deletion,38720,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,60,Cycle,Base Substitution,38105,50.17,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L004,60,Cycle,Base Insertion,38042,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,60,Cycle,Base Deletion,38042,4.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,61,Cycle,Base Substitution,38097,42.49,29.00,27.71,1.29,After
REGRESSION.HCC1395_tumor.L004,61,Cycle,Base Insertion,38033,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,61,Cycle,Base Deletion,38033,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,62,Cycle,Base Substitution,38122,54.01,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L004,62,Cycle,Base Insertion,38053,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,62,Cycle,Base Deletion,38053,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,63,Cycle,Base Substitution,38019,56.61,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L004,63,Cycle,Base Insertion,37952,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,63,Cycle,Base Deletion,37952,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,64,Cycle,Base Substitution,38044,43.36,29.00,27.66,1.34,After
REGRESSION.HCC1395_tumor.L004,64,Cycle,Base Insertion,37973,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,64,Cycle,Base Deletion,37973,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,65,Cycle,Base Substitution,37931,61.23,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L004,65,Cycle,Base Insertion,37855,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,65,Cycle,Base Deletion,37855,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,66,Cycle,Base Substitution,37911,48.51,28.00,27.62,0.38,After
REGRESSION.HCC1395_tumor.L004,66,Cycle,Base Insertion,37820,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,66,Cycle,Base Deletion,37820,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,67,Cycle,Base Substitution,38067,47.85,28.00,27.40,0.60,After
REGRESSION.HCC1395_tumor.L004,67,Cycle,Base Insertion,37962,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,67,Cycle,Base Deletion,37962,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,68,Cycle,Base Substitution,38094,53.94,28.00,27.98,0.02,After
REGRESSION.HCC1395_tumor.L004,68,Cycle,Base Insertion,37984,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,68,Cycle,Base Deletion,37984,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,69,Cycle,Base Substitution,38037,56.01,28.00,27.64,0.36,After
REGRESSION.HCC1395_tumor.L004,69,Cycle,Base Insertion,37930,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,69,Cycle,Base Deletion,37930,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,7,Cycle,Base Substitution,38763,43.70,29.00,28.02,0.98,After
REGRESSION.HCC1395_tumor.L004,7,Cycle,Base Insertion,38763,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,7,Cycle,Base Deletion,38763,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,70,Cycle,Base Substitution,37982,44.92,29.00,28.04,0.96,After
REGRESSION.HCC1395_tumor.L004,70,Cycle,Base Insertion,37874,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,70,Cycle,Base Deletion,37874,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,71,Cycle,Base Substitution,37991,33.77,29.00,27.48,1.52,After
REGRESSION.HCC1395_tumor.L004,71,Cycle,Base Insertion,37879,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,71,Cycle,Base Deletion,37879,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,72,Cycle,Base Substitution,37773,52.04,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L004,72,Cycle,Base Insertion,37651,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,72,Cycle,Base Deletion,37651,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,73,Cycle,Base Substitution,37942,68.08,27.00,27.37,-0.37,After
REGRESSION.HCC1395_tumor.L004,73,Cycle,Base Insertion,37803,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,73,Cycle,Base Deletion,37803,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,74,Cycle,Base Substitution,37754,43.77,28.00,27.64,0.36,After
REGRESSION.HCC1395_tumor.L004,74,Cycle,Base Insertion,37601,2.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,74,Cycle,Base Deletion,37601,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,75,Cycle,Base Substitution,37721,48.57,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L004,75,Cycle,Base Insertion,37563,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,75,Cycle,Base Deletion,37563,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,76,Cycle,Base Substitution,37769,47.72,28.00,27.25,0.75,After
REGRESSION.HCC1395_tumor.L004,76,Cycle,Base Insertion,37622,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,76,Cycle,Base Deletion,37622,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,77,Cycle,Base Substitution,37780,58.25,28.00,27.34,0.66,After
REGRESSION.HCC1395_tumor.L004,77,Cycle,Base Insertion,37638,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,77,Cycle,Base Deletion,37638,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,78,Cycle,Base Substitution,37613,58.02,28.00,27.44,0.56,After
REGRESSION.HCC1395_tumor.L004,78,Cycle,Base Insertion,37464,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,78,Cycle,Base Deletion,37464,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,79,Cycle,Base Substitution,37666,53.92,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L004,79,Cycle,Base Insertion,37493,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,79,Cycle,Base Deletion,37493,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,8,Cycle,Base Substitution,38750,33.33,30.00,28.31,1.69,After
REGRESSION.HCC1395_tumor.L004,8,Cycle,Base Insertion,38750,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,8,Cycle,Base Deletion,38750,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,80,Cycle,Base Substitution,37512,56.93,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L004,80,Cycle,Base Insertion,37330,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,80,Cycle,Base Deletion,37330,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,81,Cycle,Base Substitution,37467,71.48,27.00,27.28,-0.28,After
REGRESSION.HCC1395_tumor.L004,81,Cycle,Base Insertion,37280,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,81,Cycle,Base Deletion,37280,2.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,82,Cycle,Base Substitution,37446,51.78,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L004,82,Cycle,Base Insertion,37250,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,82,Cycle,Base Deletion,37250,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,83,Cycle,Base Substitution,37398,62.32,28.00,27.31,0.69,After
REGRESSION.HCC1395_tumor.L004,83,Cycle,Base Insertion,37213,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,83,Cycle,Base Deletion,37213,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,84,Cycle,Base Substitution,37335,65.87,27.00,27.42,-0.42,After
REGRESSION.HCC1395_tumor.L004,84,Cycle,Base Insertion,37136,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,84,Cycle,Base Deletion,37136,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,85,Cycle,Base Substitution,37224,58.76,28.00,27.08,0.92,After
REGRESSION.HCC1395_tumor.L004,85,Cycle,Base Insertion,37011,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,85,Cycle,Base Deletion,37011,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,86,Cycle,Base Substitution,37148,65.33,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L004,86,Cycle,Base Insertion,36928,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,86,Cycle,Base Deletion,36928,3.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,87,Cycle,Base Substitution,37240,57.89,28.00,27.36,0.64,After
REGRESSION.HCC1395_tumor.L004,87,Cycle,Base Insertion,37005,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,87,Cycle,Base Deletion,37005,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,88,Cycle,Base Substitution,37132,53.41,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L004,88,Cycle,Base Insertion,36894,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,88,Cycle,Base Deletion,36894,3.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,89,Cycle,Base Substitution,36930,66.55,27.00,27.58,-0.58,After
REGRESSION.HCC1395_tumor.L004,89,Cycle,Base Insertion,36684,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,89,Cycle,Base Deletion,36684,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,9,Cycle,Base Substitution,38857,41.89,29.00,27.65,1.35,After
REGRESSION.HCC1395_tumor.L004,9,Cycle,Base Insertion,38857,4.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,9,Cycle,Base Deletion,38857,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,90,Cycle,Base Substitution,36932,55.69,28.00,26.95,1.05,After
REGRESSION.HCC1395_tumor.L004,90,Cycle,Base Insertion,36681,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,90,Cycle,Base Deletion,36681,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,91,Cycle,Base Substitution,36876,60.96,28.00,27.36,0.64,After
REGRESSION.HCC1395_tumor.L004,91,Cycle,Base Insertion,36643,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,91,Cycle,Base Deletion,36643,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,92,Cycle,Base Substitution,36951,66.62,27.00,27.18,-0.18,After
REGRESSION.HCC1395_tumor.L004,92,Cycle,Base Insertion,36712,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,92,Cycle,Base Deletion,36712,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,93,Cycle,Base Substitution,36817,54.08,28.00,27.10,0.90,After
REGRESSION.HCC1395_tumor.L004,93,Cycle,Base Insertion,36574,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,93,Cycle,Base Deletion,36574,4.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,94,Cycle,Base Substitution,36852,64.16,28.00,27.20,0.80,After
REGRESSION.HCC1395_tumor.L004,94,Cycle,Base Insertion,36620,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,94,Cycle,Base Deletion,36620,5.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,95,Cycle,Base Substitution,36690,55.55,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L004,95,Cycle,Base Insertion,36423,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,95,Cycle,Base Deletion,36423,4.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,96,Cycle,Base Substitution,36679,67.14,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L004,96,Cycle,Base Insertion,36403,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,96,Cycle,Base Deletion,36403,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,97,Cycle,Base Substitution,36501,57.53,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L004,97,Cycle,Base Insertion,36216,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,97,Cycle,Base Deletion,36216,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,98,Cycle,Base Substitution,36531,59.51,28.00,27.10,0.90,After
REGRESSION.HCC1395_tumor.L004,98,Cycle,Base Insertion,36240,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,98,Cycle,Base Deletion,36240,4.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,99,Cycle,Base Substitution,36394,60.23,28.00,27.04,0.96,After
REGRESSION.HCC1395_tumor.L004,99,Cycle,Base Insertion,36114,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,99,Cycle,Base Deletion,36114,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L004,10,QualityScore,Base Substitution,34580,3735.58,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L004,11,QualityScore,Base Substitution,15120,1070.51,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L004,12,QualityScore,Base Substitution,11817,679.44,12.00,12.00,0.00,After
REGRESSION.HCC1395_tumor.L004,13,QualityScore,Base Substitution,21324,738.01,14.00,13.00,1.00,After
REGRESSION.HCC1395_tumor.L004,14,QualityScore,Base Substitution,12753,196.90,17.00,14.00,3.00,After
REGRESSION.HCC1395_tumor.L004,15,QualityScore,Base Substitution,17078,13.79,21.00,15.00,6.00,After
REGRESSION.HCC1395_tumor.L004,16,QualityScore,Base Substitution,8300,4.05,20.00,16.00,4.00,After
REGRESSION.HCC1395_tumor.L004,17,QualityScore,Base Substitution,14241,3.25,22.00,17.00,5.00,After
REGRESSION.HCC1395_tumor.L004,22,QualityScore,Base Substitution,7961,2.59,24.00,22.00,2.00,After
REGRESSION.HCC1395_tumor.L004,23,QualityScore,Base Substitution,39182,206.75,23.00,23.00,0.00,After
REGRESSION.HCC1395_tumor.L004,24,QualityScore,Base Substitution,124742,634.17,23.00,24.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,25,QualityScore,Base Substitution,102808,294.29,25.00,25.00,0.00,After
REGRESSION.HCC1395_tumor.L004,26,QualityScore,Base Substitution,66193,101.49,27.00,26.00,1.00,After
REGRESSION.HCC1395_tumor.L004,28,QualityScore,Base Substitution,7913,0.43,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L004,29,QualityScore,Base Substitution,68428,110.36,28.00,29.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,30,QualityScore,Base Substitution,2544390,1617.77,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L004,31,QualityScore,Base Substitution,2864333,1289.32,33.00,31.00,2.00,After
REGRESSION.HCC1395_tumor.L004,32,QualityScore,Base Substitution,4678251,1060.01,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L004,33,QualityScore,Base Substitution,310233,48.08,35.00,33.00,2.00,After
REGRESSION.HCC1395_tumor.L004,45,QualityScore,Base Insertion,10994676,488.89,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L004,45,QualityScore,Base Deletion,10994676,1026.88,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L004,7,QualityScore,Base Substitution,182,34.00,7.00,7.00,0.00,After
REGRESSION.HCC1395_tumor.L004,8,QualityScore,Base Substitution,8267,1434.44,8.00,8.00,0.00,After
REGRESSION.HCC1395_tumor.L004,9,QualityScore,Base Substitution,36580,5277.50,8.00,9.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,AA,Context,Base Substitution,826822,1750.34,27.00,25.55,1.45,After
REGRESSION.HCC1395_tumor.L005,AAA,Context,Base Insertion,293115,54.70,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L005,AAA,Context,Base Deletion,293115,186.66,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L005,AAC,Context,Base Insertion,131652,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AAC,Context,Base Deletion,131652,7.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AAG,Context,Base Insertion,197200,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AAG,Context,Base Deletion,197200,10.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AAT,Context,Base Insertion,171676,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AAT,Context,Base Deletion,171676,14.55,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,AC,Context,Base Substitution,529374,1768.33,25.00,24.72,0.28,After
REGRESSION.HCC1395_tumor.L005,ACA,Context,Base Insertion,204101,19.62,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,ACA,Context,Base Deletion,204101,37.75,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L005,ACC,Context,Base Insertion,146295,5.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ACC,Context,Base Deletion,146295,7.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ACG,Context,Base Insertion,30640,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ACG,Context,Base Deletion,30640,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ACT,Context,Base Insertion,157102,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ACT,Context,Base Deletion,157102,11.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AG,Context,Base Substitution,797009,585.32,31.00,28.80,2.20,After
REGRESSION.HCC1395_tumor.L005,AGA,Context,Base Insertion,221126,5.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AGA,Context,Base Deletion,221126,11.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AGC,Context,Base Insertion,191933,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AGC,Context,Base Deletion,191933,7.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AGG,Context,Base Insertion,227313,13.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AGG,Context,Base Deletion,227313,7.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AGT,Context,Base Insertion,153563,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AGT,Context,Base Deletion,153563,5.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,AT,Context,Base Substitution,596692,618.47,30.00,27.62,2.38,After
REGRESSION.HCC1395_tumor.L005,ATA,Context,Base Insertion,132778,9.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ATA,Context,Base Deletion,132778,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ATC,Context,Base Insertion,120845,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ATC,Context,Base Deletion,120845,8.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ATG,Context,Base Insertion,172828,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ATG,Context,Base Deletion,172828,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ATT,Context,Base Insertion,180268,2.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,ATT,Context,Base Deletion,180268,7.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CA,Context,Base Substitution,854324,1748.89,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L005,CAA,Context,Base Insertion,170950,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CAA,Context,Base Deletion,170950,9.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CAC,Context,Base Insertion,183698,22.54,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,CAC,Context,Base Deletion,183698,34.31,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L005,CAG,Context,Base Insertion,291545,7.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CAG,Context,Base Deletion,291545,12.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CAT,Context,Base Insertion,169135,5.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CAT,Context,Base Deletion,169135,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CC,Context,Base Substitution,765061,2438.13,25.00,24.59,0.41,After
REGRESSION.HCC1395_tumor.L005,CCA,Context,Base Insertion,245375,4.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CCA,Context,Base Deletion,245375,5.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CCC,Context,Base Insertion,213129,9.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CCC,Context,Base Deletion,213129,15.95,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,CCG,Context,Base Insertion,53288,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CCG,Context,Base Deletion,53288,5.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CCT,Context,Base Insertion,242968,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CCT,Context,Base Deletion,242968,11.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CG,Context,Base Substitution,160153,569.26,24.00,24.84,-0.84,After
REGRESSION.HCC1395_tumor.L005,CGA,Context,Base Insertion,56245,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CGA,Context,Base Deletion,56245,0.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CGC,Context,Base Insertion,80711,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CGC,Context,Base Deletion,80711,6.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CGG,Context,Base Insertion,97192,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CGG,Context,Base Deletion,97192,6.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CGT,Context,Base Insertion,62549,0.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CGT,Context,Base Deletion,62549,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CT,Context,Base Substitution,838109,426.94,33.00,29.37,3.63,After
REGRESSION.HCC1395_tumor.L005,CTA,Context,Base Insertion,96374,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CTA,Context,Base Deletion,96374,5.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CTC,Context,Base Insertion,201872,5.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CTC,Context,Base Deletion,201872,16.05,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,CTG,Context,Base Insertion,292945,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CTG,Context,Base Deletion,292945,10.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CTT,Context,Base Insertion,208156,7.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,CTT,Context,Base Deletion,208156,10.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GA,Context,Base Substitution,699558,1051.95,28.00,26.54,1.46,After
REGRESSION.HCC1395_tumor.L005,GAA,Context,Base Insertion,207424,5.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GAA,Context,Base Deletion,207424,9.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GAC,Context,Base Insertion,117505,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GAC,Context,Base Deletion,117505,6.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GAG,Context,Base Insertion,206651,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GAG,Context,Base Deletion,206651,10.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GAT,Context,Base Insertion,125022,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GAT,Context,Base Deletion,125022,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GC,Context,Base Substitution,662485,1468.61,27.00,25.91,1.09,After
REGRESSION.HCC1395_tumor.L005,GCA,Context,Base Insertion,204272,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GCA,Context,Base Deletion,204272,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GCC,Context,Base Insertion,199383,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GCC,Context,Base Deletion,199383,8.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GCG,Context,Base Insertion,48803,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GCG,Context,Base Deletion,48803,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GCT,Context,Base Insertion,209736,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GCT,Context,Base Deletion,209736,5.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GG,Context,Base Substitution,789940,764.02,30.00,27.69,2.31,After
REGRESSION.HCC1395_tumor.L005,GGA,Context,Base Insertion,214073,18.92,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,GGA,Context,Base Deletion,214073,14.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GGC,Context,Base Insertion,196544,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GGC,Context,Base Deletion,196544,4.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GGG,Context,Base Insertion,218515,11.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GGG,Context,Base Deletion,218515,24.52,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,GGT,Context,Base Insertion,158246,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GGT,Context,Base Deletion,158246,4.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GT,Context,Base Substitution,588006,1019.97,28.00,26.93,1.07,After
REGRESSION.HCC1395_tumor.L005,GTA,Context,Base Insertion,100360,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GTA,Context,Base Deletion,100360,2.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GTC,Context,Base Insertion,126100,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GTC,Context,Base Deletion,126100,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GTG,Context,Base Insertion,200094,11.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GTG,Context,Base Deletion,200094,29.89,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,GTT,Context,Base Insertion,148065,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,GTT,Context,Base Deletion,148065,10.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TA,Context,Base Substitution,478585,1202.41,26.00,25.02,0.98,After
REGRESSION.HCC1395_tumor.L005,TAA,Context,Base Insertion,148068,10.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TAA,Context,Base Deletion,148068,11.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TAC,Context,Base Insertion,93141,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TAC,Context,Base Deletion,93141,5.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TAG,Context,Base Insertion,95656,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TAG,Context,Base Deletion,95656,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TAT,Context,Base Insertion,126550,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TAT,Context,Base Deletion,126550,5.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TC,Context,Base Substitution,644791,1569.03,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L005,TCA,Context,Base Insertion,193907,6.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TCA,Context,Base Deletion,193907,13.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TCC,Context,Base Insertion,201157,34.26,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,TCC,Context,Base Deletion,201157,8.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TCG,Context,Base Insertion,26268,0.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TCG,Context,Base Deletion,26268,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TCT,Context,Base Insertion,222463,7.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TCT,Context,Base Deletion,222463,12.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TG,Context,Base Substitution,841606,355.64,33.00,29.40,3.60,After
REGRESSION.HCC1395_tumor.L005,TGA,Context,Base Insertion,202820,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TGA,Context,Base Deletion,202820,4.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TGC,Context,Base Insertion,189097,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TGC,Context,Base Deletion,189097,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TGG,Context,Base Insertion,241080,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TGG,Context,Base Deletion,241080,6.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TGT,Context,Base Insertion,209856,13.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TGT,Context,Base Deletion,209856,32.33,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,TT,Context,Base Substitution,832810,911.23,30.00,28.29,1.71,After
REGRESSION.HCC1395_tumor.L005,TTA,Context,Base Insertion,145489,7.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TTA,Context,Base Deletion,145489,7.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TTC,Context,Base Insertion,192013,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TTC,Context,Base Deletion,192013,14.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TTG,Context,Base Insertion,169813,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TTG,Context,Base Deletion,169813,7.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,TTT,Context,Base Insertion,290823,50.58,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L005,TTT,Context,Base Deletion,290823,170.25,38.00,45.00,-7.00,After
REGRESSION.HCC1395_tumor.L005,-1,Cycle,Base Substitution,38477,141.22,24.00,23.52,0.48,After
REGRESSION.HCC1395_tumor.L005,-10,Cycle,Base Substitution,38809,60.31,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L005,-10,Cycle,Base Insertion,38809,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-10,Cycle,Base Deletion,38809,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-100,Cycle,Base Substitution,36192,66.20,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L005,-100,Cycle,Base Insertion,35871,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-100,Cycle,Base Deletion,35871,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-101,Cycle,Base Substitution,36198,100.13,26.00,25.95,0.05,After
REGRESSION.HCC1395_tumor.L005,-101,Cycle,Base Insertion,35867,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-101,Cycle,Base Deletion,35867,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-102,Cycle,Base Substitution,36080,69.42,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L005,-102,Cycle,Base Insertion,35748,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-102,Cycle,Base Deletion,35748,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-103,Cycle,Base Substitution,36040,86.08,26.00,25.88,0.12,After
REGRESSION.HCC1395_tumor.L005,-103,Cycle,Base Insertion,35718,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-103,Cycle,Base Deletion,35718,3.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-104,Cycle,Base Substitution,35895,75.07,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L005,-104,Cycle,Base Insertion,35584,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-104,Cycle,Base Deletion,35584,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-105,Cycle,Base Substitution,35702,68.05,27.00,26.38,0.62,After
REGRESSION.HCC1395_tumor.L005,-105,Cycle,Base Insertion,35383,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-105,Cycle,Base Deletion,35383,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-106,Cycle,Base Substitution,35738,73.34,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L005,-106,Cycle,Base Insertion,35423,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-106,Cycle,Base Deletion,35423,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-107,Cycle,Base Substitution,35527,75.33,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L005,-107,Cycle,Base Insertion,35200,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-107,Cycle,Base Deletion,35200,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-108,Cycle,Base Substitution,35563,80.56,26.00,26.64,-0.64,After
REGRESSION.HCC1395_tumor.L005,-108,Cycle,Base Insertion,35234,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-108,Cycle,Base Deletion,35234,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-109,Cycle,Base Substitution,35525,73.75,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L005,-109,Cycle,Base Insertion,35207,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-109,Cycle,Base Deletion,35207,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-11,Cycle,Base Substitution,38638,55.92,28.00,27.56,0.44,After
REGRESSION.HCC1395_tumor.L005,-11,Cycle,Base Insertion,38638,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-11,Cycle,Base Deletion,38638,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-110,Cycle,Base Substitution,35437,79.53,26.00,26.52,-0.52,After
REGRESSION.HCC1395_tumor.L005,-110,Cycle,Base Insertion,35102,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-110,Cycle,Base Deletion,35102,2.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-111,Cycle,Base Substitution,35369,70.49,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L005,-111,Cycle,Base Insertion,35039,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-111,Cycle,Base Deletion,35039,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-112,Cycle,Base Substitution,35290,64.96,27.00,26.35,0.65,After
REGRESSION.HCC1395_tumor.L005,-112,Cycle,Base Insertion,34937,0.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-112,Cycle,Base Deletion,34937,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-113,Cycle,Base Substitution,35165,90.82,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L005,-113,Cycle,Base Insertion,34811,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-113,Cycle,Base Deletion,34811,4.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-114,Cycle,Base Substitution,34972,86.51,26.00,26.30,-0.30,After
REGRESSION.HCC1395_tumor.L005,-114,Cycle,Base Insertion,34634,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-114,Cycle,Base Deletion,34634,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-115,Cycle,Base Substitution,34941,93.80,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L005,-115,Cycle,Base Insertion,34579,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-115,Cycle,Base Deletion,34579,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-116,Cycle,Base Substitution,34839,76.98,27.00,26.38,0.62,After
REGRESSION.HCC1395_tumor.L005,-116,Cycle,Base Insertion,34479,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-116,Cycle,Base Deletion,34479,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-117,Cycle,Base Substitution,34867,86.75,26.00,25.75,0.25,After
REGRESSION.HCC1395_tumor.L005,-117,Cycle,Base Insertion,34503,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-117,Cycle,Base Deletion,34503,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-118,Cycle,Base Substitution,34718,90.06,26.00,26.22,-0.22,After
REGRESSION.HCC1395_tumor.L005,-118,Cycle,Base Insertion,34350,0.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-118,Cycle,Base Deletion,34350,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-119,Cycle,Base Substitution,34685,83.89,26.00,26.28,-0.28,After
REGRESSION.HCC1395_tumor.L005,-119,Cycle,Base Insertion,34326,0.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-119,Cycle,Base Deletion,34326,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-12,Cycle,Base Substitution,38716,61.48,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L005,-12,Cycle,Base Insertion,38716,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-12,Cycle,Base Deletion,38716,2.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-120,Cycle,Base Substitution,34596,72.98,27.00,26.44,0.56,After
REGRESSION.HCC1395_tumor.L005,-120,Cycle,Base Insertion,34241,0.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-120,Cycle,Base Deletion,34241,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-121,Cycle,Base Substitution,34456,63.70,27.00,26.25,0.75,After
REGRESSION.HCC1395_tumor.L005,-121,Cycle,Base Insertion,34106,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-121,Cycle,Base Deletion,34106,2.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-122,Cycle,Base Substitution,34409,75.70,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L005,-122,Cycle,Base Insertion,34062,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-122,Cycle,Base Deletion,34062,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-123,Cycle,Base Substitution,34338,75.01,27.00,26.20,0.80,After
REGRESSION.HCC1395_tumor.L005,-123,Cycle,Base Insertion,33970,0.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-123,Cycle,Base Deletion,33970,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-124,Cycle,Base Substitution,34241,103.43,25.00,25.62,-0.62,After
REGRESSION.HCC1395_tumor.L005,-124,Cycle,Base Insertion,33853,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-124,Cycle,Base Deletion,33853,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-125,Cycle,Base Substitution,34244,74.33,27.00,26.45,0.55,After
REGRESSION.HCC1395_tumor.L005,-125,Cycle,Base Insertion,33851,0.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-125,Cycle,Base Deletion,33851,2.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-126,Cycle,Base Substitution,34004,62.81,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L005,-126,Cycle,Base Insertion,33624,0.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-126,Cycle,Base Deletion,33624,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-127,Cycle,Base Substitution,33883,65.27,27.00,26.44,0.56,After
REGRESSION.HCC1395_tumor.L005,-127,Cycle,Base Insertion,33486,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-127,Cycle,Base Deletion,33486,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-128,Cycle,Base Substitution,33837,71.21,27.00,26.32,0.68,After
REGRESSION.HCC1395_tumor.L005,-128,Cycle,Base Insertion,33429,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-128,Cycle,Base Deletion,33429,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-129,Cycle,Base Substitution,33822,82.00,26.00,26.15,-0.15,After
REGRESSION.HCC1395_tumor.L005,-129,Cycle,Base Insertion,33415,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-129,Cycle,Base Deletion,33415,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-13,Cycle,Base Substitution,38637,63.37,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L005,-13,Cycle,Base Insertion,38637,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-13,Cycle,Base Deletion,38637,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-130,Cycle,Base Substitution,33571,77.91,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L005,-130,Cycle,Base Insertion,33163,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-130,Cycle,Base Deletion,33163,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-131,Cycle,Base Substitution,33552,81.20,26.00,26.09,-0.09,After
REGRESSION.HCC1395_tumor.L005,-131,Cycle,Base Insertion,33131,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-131,Cycle,Base Deletion,33131,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-132,Cycle,Base Substitution,33401,78.47,26.00,26.12,-0.12,After
REGRESSION.HCC1395_tumor.L005,-132,Cycle,Base Insertion,33002,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-132,Cycle,Base Deletion,33002,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-133,Cycle,Base Substitution,33346,71.48,27.00,26.21,0.79,After
REGRESSION.HCC1395_tumor.L005,-133,Cycle,Base Insertion,32949,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-133,Cycle,Base Deletion,32949,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-134,Cycle,Base Substitution,33239,81.84,26.00,26.06,-0.06,After
REGRESSION.HCC1395_tumor.L005,-134,Cycle,Base Insertion,32825,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-134,Cycle,Base Deletion,32825,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-135,Cycle,Base Substitution,33115,87.55,26.00,26.20,-0.20,After
REGRESSION.HCC1395_tumor.L005,-135,Cycle,Base Insertion,32708,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-135,Cycle,Base Deletion,32708,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-136,Cycle,Base Substitution,33040,56.44,27.00,26.34,0.66,After
REGRESSION.HCC1395_tumor.L005,-136,Cycle,Base Insertion,32624,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-136,Cycle,Base Deletion,32624,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-137,Cycle,Base Substitution,32915,83.66,26.00,26.10,-0.10,After
REGRESSION.HCC1395_tumor.L005,-137,Cycle,Base Insertion,32484,0.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-137,Cycle,Base Deletion,32484,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-138,Cycle,Base Substitution,32807,76.32,26.00,25.54,0.46,After
REGRESSION.HCC1395_tumor.L005,-138,Cycle,Base Insertion,32335,0.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-138,Cycle,Base Deletion,32335,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-139,Cycle,Base Substitution,32779,66.48,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L005,-139,Cycle,Base Insertion,32309,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-139,Cycle,Base Deletion,32309,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-14,Cycle,Base Substitution,38777,52.26,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L005,-14,Cycle,Base Insertion,38777,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-14,Cycle,Base Deletion,38777,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-140,Cycle,Base Substitution,32630,62.96,27.00,26.25,0.75,After
REGRESSION.HCC1395_tumor.L005,-140,Cycle,Base Insertion,32122,0.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-140,Cycle,Base Deletion,32122,0.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-141,Cycle,Base Substitution,32471,56.04,27.00,26.20,0.80,After
REGRESSION.HCC1395_tumor.L005,-141,Cycle,Base Insertion,31941,0.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-141,Cycle,Base Deletion,31941,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-142,Cycle,Base Substitution,32396,49.16,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L005,-142,Cycle,Base Insertion,31814,0.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-142,Cycle,Base Deletion,31814,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-143,Cycle,Base Substitution,32295,55.60,27.00,26.26,0.74,After
REGRESSION.HCC1395_tumor.L005,-143,Cycle,Base Insertion,31641,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-143,Cycle,Base Deletion,31641,0.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-144,Cycle,Base Substitution,32065,46.44,28.00,26.44,1.56,After
REGRESSION.HCC1395_tumor.L005,-144,Cycle,Base Insertion,31357,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-144,Cycle,Base Deletion,31357,0.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-145,Cycle,Base Substitution,32086,52.33,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L005,-145,Cycle,Base Insertion,24781,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-145,Cycle,Base Deletion,24781,0.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-146,Cycle,Base Substitution,31884,21.48,28.00,26.36,1.64,After
REGRESSION.HCC1395_tumor.L005,-146,Cycle,Base Insertion,24697,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-146,Cycle,Base Deletion,24697,0.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-147,Cycle,Base Substitution,31743,28.62,26.00,23.11,2.89,After
REGRESSION.HCC1395_tumor.L005,-148,Cycle,Base Substitution,31483,27.85,23.00,16.12,6.88,After
REGRESSION.HCC1395_tumor.L005,-149,Cycle,Base Substitution,19549,23.00,22.00,14.17,7.83,After
REGRESSION.HCC1395_tumor.L005,-15,Cycle,Base Substitution,38755,41.62,29.00,27.72,1.28,After
REGRESSION.HCC1395_tumor.L005,-15,Cycle,Base Insertion,38755,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-15,Cycle,Base Deletion,38755,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-150,Cycle,Base Substitution,6858,15.20,26.00,26.57,-0.57,After
REGRESSION.HCC1395_tumor.L005,-16,Cycle,Base Substitution,38784,53.76,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L005,-16,Cycle,Base Insertion,38784,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-16,Cycle,Base Deletion,38784,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-17,Cycle,Base Substitution,38712,56.05,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L005,-17,Cycle,Base Insertion,38712,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-17,Cycle,Base Deletion,38712,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-18,Cycle,Base Substitution,38694,45.45,29.00,27.76,1.24,After
REGRESSION.HCC1395_tumor.L005,-18,Cycle,Base Insertion,38694,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-18,Cycle,Base Deletion,38694,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-19,Cycle,Base Substitution,38576,49.60,28.00,27.75,0.25,After
REGRESSION.HCC1395_tumor.L005,-19,Cycle,Base Insertion,38576,2.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-19,Cycle,Base Deletion,38576,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-2,Cycle,Base Substitution,38904,125.75,25.00,25.66,-0.66,After
REGRESSION.HCC1395_tumor.L005,-20,Cycle,Base Substitution,38629,52.14,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L005,-20,Cycle,Base Insertion,38629,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-20,Cycle,Base Deletion,38629,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-21,Cycle,Base Substitution,38577,53.18,28.00,27.87,0.13,After
REGRESSION.HCC1395_tumor.L005,-21,Cycle,Base Insertion,38577,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-21,Cycle,Base Deletion,38577,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-22,Cycle,Base Substitution,38611,42.04,29.00,27.73,1.27,After
REGRESSION.HCC1395_tumor.L005,-22,Cycle,Base Insertion,38611,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-22,Cycle,Base Deletion,38611,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-23,Cycle,Base Substitution,38562,44.00,29.00,27.73,1.27,After
REGRESSION.HCC1395_tumor.L005,-23,Cycle,Base Insertion,38562,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-23,Cycle,Base Deletion,38562,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-24,Cycle,Base Substitution,38614,57.42,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L005,-24,Cycle,Base Insertion,38613,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-24,Cycle,Base Deletion,38613,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-25,Cycle,Base Substitution,38569,50.01,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L005,-25,Cycle,Base Insertion,38568,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-25,Cycle,Base Deletion,38568,4.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-26,Cycle,Base Substitution,38582,73.85,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L005,-26,Cycle,Base Insertion,38582,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-26,Cycle,Base Deletion,38582,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-27,Cycle,Base Substitution,38521,47.85,28.00,26.83,1.17,After
REGRESSION.HCC1395_tumor.L005,-27,Cycle,Base Insertion,38520,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-27,Cycle,Base Deletion,38520,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-28,Cycle,Base Substitution,38561,67.45,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L005,-28,Cycle,Base Insertion,38557,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-28,Cycle,Base Deletion,38557,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-29,Cycle,Base Substitution,38572,66.14,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L005,-29,Cycle,Base Insertion,38565,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-29,Cycle,Base Deletion,38565,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-3,Cycle,Base Substitution,38999,126.42,25.00,25.84,-0.84,After
REGRESSION.HCC1395_tumor.L005,-30,Cycle,Base Substitution,38612,61.62,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L005,-30,Cycle,Base Insertion,38605,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-30,Cycle,Base Deletion,38605,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-31,Cycle,Base Substitution,38468,56.37,28.00,26.83,1.17,After
REGRESSION.HCC1395_tumor.L005,-31,Cycle,Base Insertion,38459,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-31,Cycle,Base Deletion,38459,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-32,Cycle,Base Substitution,38545,53.23,28.00,27.20,0.80,After
REGRESSION.HCC1395_tumor.L005,-32,Cycle,Base Insertion,38541,5.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-32,Cycle,Base Deletion,38541,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-33,Cycle,Base Substitution,38510,58.68,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L005,-33,Cycle,Base Insertion,38505,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-33,Cycle,Base Deletion,38505,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-34,Cycle,Base Substitution,38561,51.18,28.00,26.84,1.16,After
REGRESSION.HCC1395_tumor.L005,-34,Cycle,Base Insertion,38557,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-34,Cycle,Base Deletion,38557,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-35,Cycle,Base Substitution,38527,55.69,28.00,26.78,1.22,After
REGRESSION.HCC1395_tumor.L005,-35,Cycle,Base Insertion,38523,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-35,Cycle,Base Deletion,38523,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-36,Cycle,Base Substitution,38418,53.77,28.00,26.80,1.20,After
REGRESSION.HCC1395_tumor.L005,-36,Cycle,Base Insertion,38414,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-36,Cycle,Base Deletion,38414,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-37,Cycle,Base Substitution,38486,48.05,28.00,26.90,1.10,After
REGRESSION.HCC1395_tumor.L005,-37,Cycle,Base Insertion,38483,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-37,Cycle,Base Deletion,38483,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-38,Cycle,Base Substitution,38476,43.76,29.00,27.37,1.63,After
REGRESSION.HCC1395_tumor.L005,-38,Cycle,Base Insertion,38473,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-38,Cycle,Base Deletion,38473,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-39,Cycle,Base Substitution,38517,64.76,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L005,-39,Cycle,Base Insertion,38516,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-39,Cycle,Base Deletion,38516,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-4,Cycle,Base Substitution,38839,77.45,27.00,26.03,0.97,After
REGRESSION.HCC1395_tumor.L005,-40,Cycle,Base Substitution,38511,65.67,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L005,-40,Cycle,Base Insertion,38507,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-40,Cycle,Base Deletion,38507,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-41,Cycle,Base Substitution,38444,49.09,28.00,27.11,0.89,After
REGRESSION.HCC1395_tumor.L005,-41,Cycle,Base Insertion,38440,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-41,Cycle,Base Deletion,38440,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-42,Cycle,Base Substitution,38383,58.88,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L005,-42,Cycle,Base Insertion,38377,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-42,Cycle,Base Deletion,38377,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-43,Cycle,Base Substitution,38406,50.47,28.00,26.95,1.05,After
REGRESSION.HCC1395_tumor.L005,-43,Cycle,Base Insertion,38397,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-43,Cycle,Base Deletion,38397,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-44,Cycle,Base Substitution,38280,62.95,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L005,-44,Cycle,Base Insertion,38274,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-44,Cycle,Base Deletion,38274,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-45,Cycle,Base Substitution,38252,61.12,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L005,-45,Cycle,Base Insertion,38244,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-45,Cycle,Base Deletion,38244,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-46,Cycle,Base Substitution,38369,59.50,27.00,26.91,0.09,After
REGRESSION.HCC1395_tumor.L005,-46,Cycle,Base Insertion,38358,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-46,Cycle,Base Deletion,38358,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-47,Cycle,Base Substitution,38383,62.54,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L005,-47,Cycle,Base Insertion,38370,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-47,Cycle,Base Deletion,38370,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-48,Cycle,Base Substitution,38318,58.50,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L005,-48,Cycle,Base Insertion,38302,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-48,Cycle,Base Deletion,38302,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-49,Cycle,Base Substitution,38371,54.04,28.00,26.98,1.02,After
REGRESSION.HCC1395_tumor.L005,-49,Cycle,Base Insertion,38351,2.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-49,Cycle,Base Deletion,38351,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-5,Cycle,Base Substitution,38916,53.87,28.00,26.85,1.15,After
REGRESSION.HCC1395_tumor.L005,-5,Cycle,Base Insertion,38916,0.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-5,Cycle,Base Deletion,38916,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-50,Cycle,Base Substitution,38351,69.98,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L005,-50,Cycle,Base Insertion,38331,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-50,Cycle,Base Deletion,38331,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-51,Cycle,Base Substitution,38239,62.36,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L005,-51,Cycle,Base Insertion,38218,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-51,Cycle,Base Deletion,38218,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-52,Cycle,Base Substitution,38253,59.00,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L005,-52,Cycle,Base Insertion,38220,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-52,Cycle,Base Deletion,38220,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-53,Cycle,Base Substitution,38303,56.39,28.00,26.87,1.13,After
REGRESSION.HCC1395_tumor.L005,-53,Cycle,Base Insertion,38269,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-53,Cycle,Base Deletion,38269,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-54,Cycle,Base Substitution,38413,57.69,28.00,27.05,0.95,After
REGRESSION.HCC1395_tumor.L005,-54,Cycle,Base Insertion,38368,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-54,Cycle,Base Deletion,38368,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-55,Cycle,Base Substitution,38262,80.16,27.00,26.83,0.17,After
REGRESSION.HCC1395_tumor.L005,-55,Cycle,Base Insertion,38216,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-55,Cycle,Base Deletion,38216,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-56,Cycle,Base Substitution,38209,78.95,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L005,-56,Cycle,Base Insertion,38161,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-56,Cycle,Base Deletion,38161,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-57,Cycle,Base Substitution,38301,59.94,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L005,-57,Cycle,Base Insertion,38257,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-57,Cycle,Base Deletion,38257,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-58,Cycle,Base Substitution,38176,72.65,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L005,-58,Cycle,Base Insertion,38126,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-58,Cycle,Base Deletion,38126,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-59,Cycle,Base Substitution,38098,62.59,28.00,27.11,0.89,After
REGRESSION.HCC1395_tumor.L005,-59,Cycle,Base Insertion,38044,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-59,Cycle,Base Deletion,38044,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-6,Cycle,Base Substitution,38824,64.39,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L005,-6,Cycle,Base Insertion,38824,0.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-6,Cycle,Base Deletion,38824,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-60,Cycle,Base Substitution,38155,69.58,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L005,-60,Cycle,Base Insertion,38104,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-60,Cycle,Base Deletion,38104,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-61,Cycle,Base Substitution,38248,68.43,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L005,-61,Cycle,Base Insertion,38186,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-61,Cycle,Base Deletion,38186,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-62,Cycle,Base Substitution,38201,65.00,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L005,-62,Cycle,Base Insertion,38130,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-62,Cycle,Base Deletion,38130,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-63,Cycle,Base Substitution,38085,64.30,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L005,-63,Cycle,Base Insertion,38012,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-63,Cycle,Base Deletion,38012,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-64,Cycle,Base Substitution,38036,69.01,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L005,-64,Cycle,Base Insertion,37971,2.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-64,Cycle,Base Deletion,37971,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-65,Cycle,Base Substitution,38047,63.33,28.00,27.05,0.95,After
REGRESSION.HCC1395_tumor.L005,-65,Cycle,Base Insertion,37981,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-65,Cycle,Base Deletion,37981,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-66,Cycle,Base Substitution,38047,76.20,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L005,-66,Cycle,Base Insertion,37959,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-66,Cycle,Base Deletion,37959,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-67,Cycle,Base Substitution,38123,66.22,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L005,-67,Cycle,Base Insertion,38037,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-67,Cycle,Base Deletion,38037,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-68,Cycle,Base Substitution,38122,59.92,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L005,-68,Cycle,Base Insertion,38014,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-68,Cycle,Base Deletion,38014,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-69,Cycle,Base Substitution,37944,58.91,28.00,27.08,0.92,After
REGRESSION.HCC1395_tumor.L005,-69,Cycle,Base Insertion,37844,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-69,Cycle,Base Deletion,37844,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-7,Cycle,Base Substitution,38899,60.96,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L005,-7,Cycle,Base Insertion,38899,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-7,Cycle,Base Deletion,38899,2.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-70,Cycle,Base Substitution,38028,71.32,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L005,-70,Cycle,Base Insertion,37909,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-70,Cycle,Base Deletion,37909,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-71,Cycle,Base Substitution,37883,68.44,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L005,-71,Cycle,Base Insertion,37757,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-71,Cycle,Base Deletion,37757,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-72,Cycle,Base Substitution,37851,58.08,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L005,-72,Cycle,Base Insertion,37715,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-72,Cycle,Base Deletion,37715,2.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-73,Cycle,Base Substitution,37753,47.37,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L005,-73,Cycle,Base Insertion,37619,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-73,Cycle,Base Deletion,37619,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-74,Cycle,Base Substitution,37784,66.38,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L005,-74,Cycle,Base Insertion,37642,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-74,Cycle,Base Deletion,37642,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-75,Cycle,Base Substitution,37683,64.34,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L005,-75,Cycle,Base Insertion,37542,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-75,Cycle,Base Deletion,37542,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-76,Cycle,Base Substitution,37626,77.41,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L005,-76,Cycle,Base Insertion,37473,4.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-76,Cycle,Base Deletion,37473,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-77,Cycle,Base Substitution,37621,65.74,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L005,-77,Cycle,Base Insertion,37465,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-77,Cycle,Base Deletion,37465,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-78,Cycle,Base Substitution,37687,71.18,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L005,-78,Cycle,Base Insertion,37519,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-78,Cycle,Base Deletion,37519,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-79,Cycle,Base Substitution,37770,69.54,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L005,-79,Cycle,Base Insertion,37586,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-79,Cycle,Base Deletion,37586,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-8,Cycle,Base Substitution,38799,63.80,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L005,-8,Cycle,Base Insertion,38799,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-8,Cycle,Base Deletion,38799,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-80,Cycle,Base Substitution,37528,72.45,27.00,27.15,-0.15,After
REGRESSION.HCC1395_tumor.L005,-80,Cycle,Base Insertion,37345,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-80,Cycle,Base Deletion,37345,4.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-81,Cycle,Base Substitution,37434,54.99,28.00,26.80,1.20,After
REGRESSION.HCC1395_tumor.L005,-81,Cycle,Base Insertion,37246,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-81,Cycle,Base Deletion,37246,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-82,Cycle,Base Substitution,37423,76.92,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L005,-82,Cycle,Base Insertion,37217,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-82,Cycle,Base Deletion,37217,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-83,Cycle,Base Substitution,37349,75.45,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L005,-83,Cycle,Base Insertion,37135,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-83,Cycle,Base Deletion,37135,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-84,Cycle,Base Substitution,37216,68.67,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L005,-84,Cycle,Base Insertion,36993,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-84,Cycle,Base Deletion,36993,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-85,Cycle,Base Substitution,37233,81.77,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L005,-85,Cycle,Base Insertion,36994,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-85,Cycle,Base Deletion,36994,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-86,Cycle,Base Substitution,37374,62.68,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L005,-86,Cycle,Base Insertion,37130,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-86,Cycle,Base Deletion,37130,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-87,Cycle,Base Substitution,37271,80.93,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L005,-87,Cycle,Base Insertion,37039,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-87,Cycle,Base Deletion,37039,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-88,Cycle,Base Substitution,37072,70.36,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L005,-88,Cycle,Base Insertion,36824,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-88,Cycle,Base Deletion,36824,2.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-89,Cycle,Base Substitution,37051,78.81,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L005,-89,Cycle,Base Insertion,36803,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-89,Cycle,Base Deletion,36803,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-9,Cycle,Base Substitution,38757,58.30,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L005,-9,Cycle,Base Insertion,38757,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-9,Cycle,Base Deletion,38757,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-90,Cycle,Base Substitution,36977,61.67,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L005,-90,Cycle,Base Insertion,36717,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-90,Cycle,Base Deletion,36717,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-91,Cycle,Base Substitution,36870,83.00,26.00,26.33,-0.33,After
REGRESSION.HCC1395_tumor.L005,-91,Cycle,Base Insertion,36592,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-91,Cycle,Base Deletion,36592,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-92,Cycle,Base Substitution,36864,73.72,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L005,-92,Cycle,Base Insertion,36595,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-92,Cycle,Base Deletion,36595,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-93,Cycle,Base Substitution,36806,73.53,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L005,-93,Cycle,Base Insertion,36532,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-93,Cycle,Base Deletion,36532,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-94,Cycle,Base Substitution,36749,83.99,26.00,25.83,0.17,After
REGRESSION.HCC1395_tumor.L005,-94,Cycle,Base Insertion,36437,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-94,Cycle,Base Deletion,36437,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-95,Cycle,Base Substitution,36490,72.13,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L005,-95,Cycle,Base Insertion,36187,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-95,Cycle,Base Deletion,36187,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-96,Cycle,Base Substitution,36460,72.27,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L005,-96,Cycle,Base Insertion,36140,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-96,Cycle,Base Deletion,36140,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-97,Cycle,Base Substitution,36439,86.23,26.00,26.58,-0.58,After
REGRESSION.HCC1395_tumor.L005,-97,Cycle,Base Insertion,36109,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-97,Cycle,Base Deletion,36109,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-98,Cycle,Base Substitution,36185,70.48,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L005,-98,Cycle,Base Insertion,35862,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-98,Cycle,Base Deletion,35862,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-99,Cycle,Base Substitution,36306,72.05,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L005,-99,Cycle,Base Insertion,35975,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,-99,Cycle,Base Deletion,35975,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,1,Cycle,Base Substitution,38473,83.11,27.00,26.07,0.93,After
REGRESSION.HCC1395_tumor.L005,10,Cycle,Base Substitution,38796,34.92,29.00,28.23,0.77,After
REGRESSION.HCC1395_tumor.L005,10,Cycle,Base Insertion,38796,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,10,Cycle,Base Deletion,38796,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,100,Cycle,Base Substitution,36356,64.15,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L005,100,Cycle,Base Insertion,36045,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,100,Cycle,Base Deletion,36045,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,101,Cycle,Base Substitution,36245,61.27,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L005,101,Cycle,Base Insertion,35927,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,101,Cycle,Base Deletion,35927,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,102,Cycle,Base Substitution,36188,61.13,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L005,102,Cycle,Base Insertion,35866,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,102,Cycle,Base Deletion,35866,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,103,Cycle,Base Substitution,35981,53.76,28.00,26.89,1.11,After
REGRESSION.HCC1395_tumor.L005,103,Cycle,Base Insertion,35668,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,103,Cycle,Base Deletion,35668,3.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,104,Cycle,Base Substitution,35933,56.81,28.00,27.28,0.72,After
REGRESSION.HCC1395_tumor.L005,104,Cycle,Base Insertion,35620,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,104,Cycle,Base Deletion,35620,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,105,Cycle,Base Substitution,35807,58.53,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L005,105,Cycle,Base Insertion,35493,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,105,Cycle,Base Deletion,35493,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,106,Cycle,Base Substitution,35791,73.35,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L005,106,Cycle,Base Insertion,35469,1.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,106,Cycle,Base Deletion,35469,2.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,107,Cycle,Base Substitution,35801,60.70,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L005,107,Cycle,Base Insertion,35500,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,107,Cycle,Base Deletion,35500,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,108,Cycle,Base Substitution,35687,84.16,26.00,26.63,-0.63,After
REGRESSION.HCC1395_tumor.L005,108,Cycle,Base Insertion,35365,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,108,Cycle,Base Deletion,35365,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,109,Cycle,Base Substitution,35612,74.04,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L005,109,Cycle,Base Insertion,35296,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,109,Cycle,Base Deletion,35296,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,11,Cycle,Base Substitution,38794,61.42,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L005,11,Cycle,Base Insertion,38794,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,11,Cycle,Base Deletion,38794,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,110,Cycle,Base Substitution,35496,74.06,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L005,110,Cycle,Base Insertion,35165,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,110,Cycle,Base Deletion,35165,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,111,Cycle,Base Substitution,35359,68.82,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L005,111,Cycle,Base Insertion,35019,0.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,111,Cycle,Base Deletion,35019,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,112,Cycle,Base Substitution,35170,61.31,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L005,112,Cycle,Base Insertion,34814,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,112,Cycle,Base Deletion,34814,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,113,Cycle,Base Substitution,35222,73.66,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L005,113,Cycle,Base Insertion,34873,0.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,113,Cycle,Base Deletion,34873,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,114,Cycle,Base Substitution,35140,69.45,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L005,114,Cycle,Base Insertion,34796,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,114,Cycle,Base Deletion,34796,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,115,Cycle,Base Substitution,35141,58.24,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L005,115,Cycle,Base Insertion,34796,0.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,115,Cycle,Base Deletion,34796,2.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,116,Cycle,Base Substitution,34925,79.92,26.00,26.58,-0.58,After
REGRESSION.HCC1395_tumor.L005,116,Cycle,Base Insertion,34593,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,116,Cycle,Base Deletion,34593,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,117,Cycle,Base Substitution,34897,65.29,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L005,117,Cycle,Base Insertion,34565,0.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,117,Cycle,Base Deletion,34565,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,118,Cycle,Base Substitution,34761,66.63,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L005,118,Cycle,Base Insertion,34416,0.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,118,Cycle,Base Deletion,34416,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,119,Cycle,Base Substitution,34700,86.96,26.00,26.10,-0.10,After
REGRESSION.HCC1395_tumor.L005,119,Cycle,Base Insertion,34376,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,119,Cycle,Base Deletion,34376,4.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,12,Cycle,Base Substitution,38688,56.63,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L005,12,Cycle,Base Insertion,38688,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,12,Cycle,Base Deletion,38688,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,120,Cycle,Base Substitution,34583,77.44,26.00,26.42,-0.42,After
REGRESSION.HCC1395_tumor.L005,120,Cycle,Base Insertion,34274,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,120,Cycle,Base Deletion,34274,4.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,121,Cycle,Base Substitution,34570,67.48,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L005,121,Cycle,Base Insertion,34238,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,121,Cycle,Base Deletion,34238,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,122,Cycle,Base Substitution,34511,66.84,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L005,122,Cycle,Base Insertion,34181,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,122,Cycle,Base Deletion,34181,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,123,Cycle,Base Substitution,34366,76.06,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L005,123,Cycle,Base Insertion,33988,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,123,Cycle,Base Deletion,33988,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,124,Cycle,Base Substitution,34383,78.15,26.00,26.63,-0.63,After
REGRESSION.HCC1395_tumor.L005,124,Cycle,Base Insertion,33991,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,124,Cycle,Base Deletion,33991,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,125,Cycle,Base Substitution,34207,61.21,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L005,125,Cycle,Base Insertion,33826,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,125,Cycle,Base Deletion,33826,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,126,Cycle,Base Substitution,34139,72.29,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L005,126,Cycle,Base Insertion,33761,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,126,Cycle,Base Deletion,33761,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,127,Cycle,Base Substitution,34145,82.79,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L005,127,Cycle,Base Insertion,33760,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,127,Cycle,Base Deletion,33760,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,128,Cycle,Base Substitution,33955,83.23,26.00,26.57,-0.57,After
REGRESSION.HCC1395_tumor.L005,128,Cycle,Base Insertion,33581,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,128,Cycle,Base Deletion,33581,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,129,Cycle,Base Substitution,33872,89.73,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L005,129,Cycle,Base Insertion,33477,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,129,Cycle,Base Deletion,33477,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,13,Cycle,Base Substitution,38648,41.20,29.00,27.51,1.49,After
REGRESSION.HCC1395_tumor.L005,13,Cycle,Base Insertion,38648,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,13,Cycle,Base Deletion,38648,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,130,Cycle,Base Substitution,33740,63.53,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L005,130,Cycle,Base Insertion,33354,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,130,Cycle,Base Deletion,33354,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,131,Cycle,Base Substitution,33627,59.18,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L005,131,Cycle,Base Insertion,33240,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,131,Cycle,Base Deletion,33240,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,132,Cycle,Base Substitution,33576,76.67,26.00,26.49,-0.49,After
REGRESSION.HCC1395_tumor.L005,132,Cycle,Base Insertion,33193,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,132,Cycle,Base Deletion,33193,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,133,Cycle,Base Substitution,33459,62.86,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L005,133,Cycle,Base Insertion,33078,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,133,Cycle,Base Deletion,33078,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,134,Cycle,Base Substitution,33370,67.83,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L005,134,Cycle,Base Insertion,32972,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,134,Cycle,Base Deletion,32972,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,135,Cycle,Base Substitution,33337,53.61,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L005,135,Cycle,Base Insertion,32946,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,135,Cycle,Base Deletion,32946,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,136,Cycle,Base Substitution,33242,67.64,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L005,136,Cycle,Base Insertion,32840,0.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,136,Cycle,Base Deletion,32840,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,137,Cycle,Base Substitution,33081,59.40,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L005,137,Cycle,Base Insertion,32682,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,137,Cycle,Base Deletion,32682,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,138,Cycle,Base Substitution,33044,68.06,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L005,138,Cycle,Base Insertion,32642,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,138,Cycle,Base Deletion,32642,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,139,Cycle,Base Substitution,32989,74.39,26.00,26.52,-0.52,After
REGRESSION.HCC1395_tumor.L005,139,Cycle,Base Insertion,32557,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,139,Cycle,Base Deletion,32557,0.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,14,Cycle,Base Substitution,38750,44.12,29.00,27.58,1.42,After
REGRESSION.HCC1395_tumor.L005,14,Cycle,Base Insertion,38750,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,14,Cycle,Base Deletion,38750,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,140,Cycle,Base Substitution,32845,76.13,26.00,26.60,-0.60,After
REGRESSION.HCC1395_tumor.L005,140,Cycle,Base Insertion,32422,0.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,140,Cycle,Base Deletion,32422,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,141,Cycle,Base Substitution,32718,82.85,26.00,25.93,0.07,After
REGRESSION.HCC1395_tumor.L005,141,Cycle,Base Insertion,32293,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,141,Cycle,Base Deletion,32293,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,142,Cycle,Base Substitution,32594,76.90,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L005,142,Cycle,Base Insertion,32164,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,142,Cycle,Base Deletion,32164,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,143,Cycle,Base Substitution,32541,68.94,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L005,143,Cycle,Base Insertion,32103,0.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,143,Cycle,Base Deletion,32103,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,144,Cycle,Base Substitution,32353,67.49,27.00,26.32,0.68,After
REGRESSION.HCC1395_tumor.L005,144,Cycle,Base Insertion,31889,0.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,144,Cycle,Base Deletion,31889,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,145,Cycle,Base Substitution,32331,65.57,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L005,145,Cycle,Base Insertion,31861,0.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,145,Cycle,Base Deletion,31861,0.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,146,Cycle,Base Substitution,32250,71.16,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L005,146,Cycle,Base Insertion,31811,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,146,Cycle,Base Deletion,31811,0.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,147,Cycle,Base Substitution,32116,77.63,26.00,26.62,-0.62,After
REGRESSION.HCC1395_tumor.L005,148,Cycle,Base Substitution,31938,73.37,26.00,26.43,-0.43,After
REGRESSION.HCC1395_tumor.L005,149,Cycle,Base Substitution,31834,73.18,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L005,15,Cycle,Base Substitution,38639,39.13,29.00,27.69,1.31,After
REGRESSION.HCC1395_tumor.L005,15,Cycle,Base Insertion,38639,1.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,15,Cycle,Base Deletion,38639,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,150,Cycle,Base Substitution,31758,63.73,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L005,16,Cycle,Base Substitution,38664,33.93,29.00,28.66,0.34,After
REGRESSION.HCC1395_tumor.L005,16,Cycle,Base Insertion,38664,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,16,Cycle,Base Deletion,38664,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,17,Cycle,Base Substitution,38726,27.35,30.00,28.77,1.23,After
REGRESSION.HCC1395_tumor.L005,17,Cycle,Base Insertion,38726,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,17,Cycle,Base Deletion,38726,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,18,Cycle,Base Substitution,38634,26.91,30.00,28.57,1.43,After
REGRESSION.HCC1395_tumor.L005,18,Cycle,Base Insertion,38634,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,18,Cycle,Base Deletion,38634,4.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,19,Cycle,Base Substitution,38718,20.87,30.00,28.54,1.46,After
REGRESSION.HCC1395_tumor.L005,19,Cycle,Base Insertion,38718,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,19,Cycle,Base Deletion,38718,4.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,2,Cycle,Base Substitution,38861,90.34,26.00,26.91,-0.91,After
REGRESSION.HCC1395_tumor.L005,20,Cycle,Base Substitution,38663,26.92,30.00,28.58,1.42,After
REGRESSION.HCC1395_tumor.L005,20,Cycle,Base Insertion,38663,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,20,Cycle,Base Deletion,38663,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,21,Cycle,Base Substitution,38558,35.01,29.00,28.73,0.27,After
REGRESSION.HCC1395_tumor.L005,21,Cycle,Base Insertion,38558,2.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,21,Cycle,Base Deletion,38558,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,22,Cycle,Base Substitution,38630,26.04,30.00,29.27,0.73,After
REGRESSION.HCC1395_tumor.L005,22,Cycle,Base Insertion,38630,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,22,Cycle,Base Deletion,38630,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,23,Cycle,Base Substitution,38608,34.23,29.00,28.58,0.42,After
REGRESSION.HCC1395_tumor.L005,23,Cycle,Base Insertion,38608,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,23,Cycle,Base Deletion,38608,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,24,Cycle,Base Substitution,38491,34.01,29.00,28.73,0.27,After
REGRESSION.HCC1395_tumor.L005,24,Cycle,Base Insertion,38491,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,24,Cycle,Base Deletion,38491,5.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,25,Cycle,Base Substitution,38625,16.47,30.00,28.63,1.37,After
REGRESSION.HCC1395_tumor.L005,25,Cycle,Base Insertion,38625,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,25,Cycle,Base Deletion,38625,5.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,26,Cycle,Base Substitution,38622,35.15,29.00,27.75,1.25,After
REGRESSION.HCC1395_tumor.L005,26,Cycle,Base Insertion,38622,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,26,Cycle,Base Deletion,38622,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,27,Cycle,Base Substitution,38427,37.93,29.00,27.79,1.21,After
REGRESSION.HCC1395_tumor.L005,27,Cycle,Base Insertion,38426,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,27,Cycle,Base Deletion,38426,5.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,28,Cycle,Base Substitution,38534,42.38,29.00,27.61,1.39,After
REGRESSION.HCC1395_tumor.L005,28,Cycle,Base Insertion,38534,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,28,Cycle,Base Deletion,38534,3.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,29,Cycle,Base Substitution,38447,43.65,29.00,27.98,1.02,After
REGRESSION.HCC1395_tumor.L005,29,Cycle,Base Insertion,38446,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,29,Cycle,Base Deletion,38446,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,3,Cycle,Base Substitution,38949,114.19,26.00,27.24,-1.24,After
REGRESSION.HCC1395_tumor.L005,30,Cycle,Base Substitution,38462,43.79,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L005,30,Cycle,Base Insertion,38461,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,30,Cycle,Base Deletion,38461,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,31,Cycle,Base Substitution,38558,44.10,29.00,27.81,1.19,After
REGRESSION.HCC1395_tumor.L005,31,Cycle,Base Insertion,38558,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,31,Cycle,Base Deletion,38558,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,32,Cycle,Base Substitution,38377,66.32,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L005,32,Cycle,Base Insertion,38377,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,32,Cycle,Base Deletion,38377,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,33,Cycle,Base Substitution,38396,34.62,29.00,27.98,1.02,After
REGRESSION.HCC1395_tumor.L005,33,Cycle,Base Insertion,38395,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,33,Cycle,Base Deletion,38395,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,34,Cycle,Base Substitution,38478,45.32,28.00,27.60,0.40,After
REGRESSION.HCC1395_tumor.L005,34,Cycle,Base Insertion,38475,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,34,Cycle,Base Deletion,38475,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,35,Cycle,Base Substitution,38531,34.34,29.00,27.68,1.32,After
REGRESSION.HCC1395_tumor.L005,35,Cycle,Base Insertion,38527,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,35,Cycle,Base Deletion,38527,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,36,Cycle,Base Substitution,38547,57.24,28.00,27.68,0.32,After
REGRESSION.HCC1395_tumor.L005,36,Cycle,Base Insertion,38542,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,36,Cycle,Base Deletion,38542,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,37,Cycle,Base Substitution,38462,39.22,29.00,28.08,0.92,After
REGRESSION.HCC1395_tumor.L005,37,Cycle,Base Insertion,38458,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,37,Cycle,Base Deletion,38458,3.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,38,Cycle,Base Substitution,38349,52.37,28.00,27.90,0.10,After
REGRESSION.HCC1395_tumor.L005,38,Cycle,Base Insertion,38348,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,38,Cycle,Base Deletion,38348,4.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,39,Cycle,Base Substitution,38343,34.68,29.00,27.99,1.01,After
REGRESSION.HCC1395_tumor.L005,39,Cycle,Base Insertion,38343,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,39,Cycle,Base Deletion,38343,4.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,4,Cycle,Base Substitution,38809,53.66,28.00,27.08,0.92,After
REGRESSION.HCC1395_tumor.L005,40,Cycle,Base Substitution,38317,37.35,29.00,27.93,1.07,After
REGRESSION.HCC1395_tumor.L005,40,Cycle,Base Insertion,38315,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,40,Cycle,Base Deletion,38315,5.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,41,Cycle,Base Substitution,38327,46.60,28.00,27.72,0.28,After
REGRESSION.HCC1395_tumor.L005,41,Cycle,Base Insertion,38323,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,41,Cycle,Base Deletion,38323,5.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,42,Cycle,Base Substitution,38331,40.48,29.00,27.99,1.01,After
REGRESSION.HCC1395_tumor.L005,42,Cycle,Base Insertion,38324,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,42,Cycle,Base Deletion,38324,5.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,43,Cycle,Base Substitution,38468,37.64,29.00,27.83,1.17,After
REGRESSION.HCC1395_tumor.L005,43,Cycle,Base Insertion,38460,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,43,Cycle,Base Deletion,38460,4.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,44,Cycle,Base Substitution,38359,51.36,28.00,27.77,0.23,After
REGRESSION.HCC1395_tumor.L005,44,Cycle,Base Insertion,38349,2.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,44,Cycle,Base Deletion,38349,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,45,Cycle,Base Substitution,38271,49.15,28.00,27.94,0.06,After
REGRESSION.HCC1395_tumor.L005,45,Cycle,Base Insertion,38260,2.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,45,Cycle,Base Deletion,38260,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,46,Cycle,Base Substitution,38379,33.57,29.00,28.29,0.71,After
REGRESSION.HCC1395_tumor.L005,46,Cycle,Base Insertion,38369,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,46,Cycle,Base Deletion,38369,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,47,Cycle,Base Substitution,38324,42.34,29.00,27.82,1.18,After
REGRESSION.HCC1395_tumor.L005,47,Cycle,Base Insertion,38311,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,47,Cycle,Base Deletion,38311,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,48,Cycle,Base Substitution,38326,38.06,29.00,27.79,1.21,After
REGRESSION.HCC1395_tumor.L005,48,Cycle,Base Insertion,38312,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,48,Cycle,Base Deletion,38312,3.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,49,Cycle,Base Substitution,38232,42.79,29.00,27.68,1.32,After
REGRESSION.HCC1395_tumor.L005,49,Cycle,Base Insertion,38217,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,49,Cycle,Base Deletion,38217,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,5,Cycle,Base Substitution,38815,50.21,28.00,27.72,0.28,After
REGRESSION.HCC1395_tumor.L005,5,Cycle,Base Insertion,38815,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,5,Cycle,Base Deletion,38815,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,50,Cycle,Base Substitution,38329,40.94,29.00,27.57,1.43,After
REGRESSION.HCC1395_tumor.L005,50,Cycle,Base Insertion,38307,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,50,Cycle,Base Deletion,38307,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,51,Cycle,Base Substitution,38341,45.18,28.00,27.89,0.11,After
REGRESSION.HCC1395_tumor.L005,51,Cycle,Base Insertion,38317,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,51,Cycle,Base Deletion,38317,4.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,52,Cycle,Base Substitution,38352,44.68,28.00,27.77,0.23,After
REGRESSION.HCC1395_tumor.L005,52,Cycle,Base Insertion,38329,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,52,Cycle,Base Deletion,38329,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,53,Cycle,Base Substitution,38288,44.87,28.00,27.83,0.17,After
REGRESSION.HCC1395_tumor.L005,53,Cycle,Base Insertion,38258,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,53,Cycle,Base Deletion,38258,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,54,Cycle,Base Substitution,38192,37.26,29.00,27.73,1.27,After
REGRESSION.HCC1395_tumor.L005,54,Cycle,Base Insertion,38155,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,54,Cycle,Base Deletion,38155,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,55,Cycle,Base Substitution,38303,43.73,29.00,27.84,1.16,After
REGRESSION.HCC1395_tumor.L005,55,Cycle,Base Insertion,38262,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,55,Cycle,Base Deletion,38262,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,56,Cycle,Base Substitution,38135,43.46,29.00,27.95,1.05,After
REGRESSION.HCC1395_tumor.L005,56,Cycle,Base Insertion,38094,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,56,Cycle,Base Deletion,38094,2.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,57,Cycle,Base Substitution,38171,67.03,28.00,27.89,0.11,After
REGRESSION.HCC1395_tumor.L005,57,Cycle,Base Insertion,38134,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,57,Cycle,Base Deletion,38134,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,58,Cycle,Base Substitution,38189,51.69,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L005,58,Cycle,Base Insertion,38152,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,58,Cycle,Base Deletion,38152,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,59,Cycle,Base Substitution,38174,42.69,29.00,27.53,1.47,After
REGRESSION.HCC1395_tumor.L005,59,Cycle,Base Insertion,38128,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,59,Cycle,Base Deletion,38128,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,6,Cycle,Base Substitution,38773,37.29,29.00,27.60,1.40,After
REGRESSION.HCC1395_tumor.L005,6,Cycle,Base Insertion,38773,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,6,Cycle,Base Deletion,38773,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,60,Cycle,Base Substitution,38236,45.61,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L005,60,Cycle,Base Insertion,38184,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,60,Cycle,Base Deletion,38184,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,61,Cycle,Base Substitution,38161,40.07,29.00,27.77,1.23,After
REGRESSION.HCC1395_tumor.L005,61,Cycle,Base Insertion,38095,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,61,Cycle,Base Deletion,38095,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,62,Cycle,Base Substitution,38081,53.10,28.00,27.60,0.40,After
REGRESSION.HCC1395_tumor.L005,62,Cycle,Base Insertion,38013,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,62,Cycle,Base Deletion,38013,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,63,Cycle,Base Substitution,38180,60.75,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L005,63,Cycle,Base Insertion,38104,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,63,Cycle,Base Deletion,38104,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,64,Cycle,Base Substitution,38095,56.62,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L005,64,Cycle,Base Insertion,38025,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,64,Cycle,Base Deletion,38025,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,65,Cycle,Base Substitution,38026,52.25,28.00,27.54,0.46,After
REGRESSION.HCC1395_tumor.L005,65,Cycle,Base Insertion,37951,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,65,Cycle,Base Deletion,37951,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,66,Cycle,Base Substitution,38101,37.61,29.00,27.55,1.45,After
REGRESSION.HCC1395_tumor.L005,66,Cycle,Base Insertion,38021,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,66,Cycle,Base Deletion,38021,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,67,Cycle,Base Substitution,38047,50.53,28.00,27.62,0.38,After
REGRESSION.HCC1395_tumor.L005,67,Cycle,Base Insertion,37964,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,67,Cycle,Base Deletion,37964,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,68,Cycle,Base Substitution,38025,47.91,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L005,68,Cycle,Base Insertion,37932,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,68,Cycle,Base Deletion,37932,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,69,Cycle,Base Substitution,38020,50.48,28.00,27.80,0.20,After
REGRESSION.HCC1395_tumor.L005,69,Cycle,Base Insertion,37923,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,69,Cycle,Base Deletion,37923,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,7,Cycle,Base Substitution,38793,40.98,29.00,27.48,1.52,After
REGRESSION.HCC1395_tumor.L005,7,Cycle,Base Insertion,38793,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,7,Cycle,Base Deletion,38793,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,70,Cycle,Base Substitution,37934,46.13,28.00,27.34,0.66,After
REGRESSION.HCC1395_tumor.L005,70,Cycle,Base Insertion,37818,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,70,Cycle,Base Deletion,37818,4.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,71,Cycle,Base Substitution,37889,57.32,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L005,71,Cycle,Base Insertion,37769,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,71,Cycle,Base Deletion,37769,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,72,Cycle,Base Substitution,37853,58.20,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L005,72,Cycle,Base Insertion,37730,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,72,Cycle,Base Deletion,37730,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,73,Cycle,Base Substitution,37800,73.27,27.00,27.20,-0.20,After
REGRESSION.HCC1395_tumor.L005,73,Cycle,Base Insertion,37662,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,73,Cycle,Base Deletion,37662,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,74,Cycle,Base Substitution,37881,54.47,28.00,27.33,0.67,After
REGRESSION.HCC1395_tumor.L005,74,Cycle,Base Insertion,37743,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,74,Cycle,Base Deletion,37743,5.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,75,Cycle,Base Substitution,37833,55.67,28.00,27.89,0.11,After
REGRESSION.HCC1395_tumor.L005,75,Cycle,Base Insertion,37687,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,75,Cycle,Base Deletion,37687,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,76,Cycle,Base Substitution,37775,52.72,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L005,76,Cycle,Base Insertion,37614,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,76,Cycle,Base Deletion,37614,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,77,Cycle,Base Substitution,37621,65.42,28.00,27.40,0.60,After
REGRESSION.HCC1395_tumor.L005,77,Cycle,Base Insertion,37458,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,77,Cycle,Base Deletion,37458,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,78,Cycle,Base Substitution,37639,57.21,28.00,27.40,0.60,After
REGRESSION.HCC1395_tumor.L005,78,Cycle,Base Insertion,37469,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,78,Cycle,Base Deletion,37469,4.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,79,Cycle,Base Substitution,37587,67.04,27.00,27.34,-0.34,After
REGRESSION.HCC1395_tumor.L005,79,Cycle,Base Insertion,37397,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,79,Cycle,Base Deletion,37397,4.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,8,Cycle,Base Substitution,38895,53.07,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L005,8,Cycle,Base Insertion,38895,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,8,Cycle,Base Deletion,38895,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,80,Cycle,Base Substitution,37544,52.05,28.00,27.37,0.63,After
REGRESSION.HCC1395_tumor.L005,80,Cycle,Base Insertion,37362,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,80,Cycle,Base Deletion,37362,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,81,Cycle,Base Substitution,37499,46.75,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L005,81,Cycle,Base Insertion,37307,2.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,81,Cycle,Base Deletion,37307,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,82,Cycle,Base Substitution,37425,60.69,28.00,27.20,0.80,After
REGRESSION.HCC1395_tumor.L005,82,Cycle,Base Insertion,37229,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,82,Cycle,Base Deletion,37229,4.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,83,Cycle,Base Substitution,37280,58.11,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L005,83,Cycle,Base Insertion,37070,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,83,Cycle,Base Deletion,37070,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,84,Cycle,Base Substitution,37459,80.70,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L005,84,Cycle,Base Insertion,37231,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,84,Cycle,Base Deletion,37231,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,85,Cycle,Base Substitution,37283,62.18,27.00,27.00,0.00,After
REGRESSION.HCC1395_tumor.L005,85,Cycle,Base Insertion,37057,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,85,Cycle,Base Deletion,37057,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,86,Cycle,Base Substitution,37176,62.10,28.00,27.06,0.94,After
REGRESSION.HCC1395_tumor.L005,86,Cycle,Base Insertion,36948,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,86,Cycle,Base Deletion,36948,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,87,Cycle,Base Substitution,37368,49.51,28.00,27.22,0.78,After
REGRESSION.HCC1395_tumor.L005,87,Cycle,Base Insertion,37125,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,87,Cycle,Base Deletion,37125,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,88,Cycle,Base Substitution,37095,72.24,27.00,27.06,-0.06,After
REGRESSION.HCC1395_tumor.L005,88,Cycle,Base Insertion,36844,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,88,Cycle,Base Deletion,36844,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,89,Cycle,Base Substitution,37205,68.82,27.00,27.05,-0.05,After
REGRESSION.HCC1395_tumor.L005,89,Cycle,Base Insertion,36959,2.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,89,Cycle,Base Deletion,36959,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,9,Cycle,Base Substitution,38719,39.60,29.00,27.80,1.20,After
REGRESSION.HCC1395_tumor.L005,9,Cycle,Base Insertion,38719,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,9,Cycle,Base Deletion,38719,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,90,Cycle,Base Substitution,37168,73.56,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L005,90,Cycle,Base Insertion,36901,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,90,Cycle,Base Deletion,36901,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,91,Cycle,Base Substitution,36965,57.86,28.00,27.10,0.90,After
REGRESSION.HCC1395_tumor.L005,91,Cycle,Base Insertion,36694,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,91,Cycle,Base Deletion,36694,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,92,Cycle,Base Substitution,36873,56.16,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L005,92,Cycle,Base Insertion,36593,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,92,Cycle,Base Deletion,36593,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,93,Cycle,Base Substitution,36722,56.07,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L005,93,Cycle,Base Insertion,36441,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,93,Cycle,Base Deletion,36441,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,94,Cycle,Base Substitution,36833,48.48,28.00,26.99,1.01,After
REGRESSION.HCC1395_tumor.L005,94,Cycle,Base Insertion,36528,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,94,Cycle,Base Deletion,36528,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,95,Cycle,Base Substitution,36699,69.96,27.00,27.02,-0.02,After
REGRESSION.HCC1395_tumor.L005,95,Cycle,Base Insertion,36390,2.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,95,Cycle,Base Deletion,36390,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,96,Cycle,Base Substitution,36517,57.23,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L005,96,Cycle,Base Insertion,36199,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,96,Cycle,Base Deletion,36199,4.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,97,Cycle,Base Substitution,36499,67.43,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L005,97,Cycle,Base Insertion,36192,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,97,Cycle,Base Deletion,36192,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,98,Cycle,Base Substitution,36385,69.35,27.00,27.22,-0.22,After
REGRESSION.HCC1395_tumor.L005,98,Cycle,Base Insertion,36068,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,98,Cycle,Base Deletion,36068,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,99,Cycle,Base Substitution,36419,63.15,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L005,99,Cycle,Base Insertion,36097,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,99,Cycle,Base Deletion,36097,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L005,10,QualityScore,Base Substitution,25005,2646.70,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L005,11,QualityScore,Base Substitution,14821,1072.82,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L005,12,QualityScore,Base Substitution,21365,1193.01,13.00,12.00,1.00,After
REGRESSION.HCC1395_tumor.L005,13,QualityScore,Base Substitution,11534,236.56,16.00,13.00,3.00,After
REGRESSION.HCC1395_tumor.L005,14,QualityScore,Base Substitution,12177,184.01,17.00,14.00,3.00,After
REGRESSION.HCC1395_tumor.L005,15,QualityScore,Base Substitution,16792,8.77,21.00,15.00,6.00,After
REGRESSION.HCC1395_tumor.L005,16,QualityScore,Base Substitution,8148,1.95,20.00,16.00,4.00,After
REGRESSION.HCC1395_tumor.L005,17,QualityScore,Base Substitution,14454,2.87,22.00,17.00,5.00,After
REGRESSION.HCC1395_tumor.L005,21,QualityScore,Base Substitution,114,0.00,21.00,21.00,0.00,After
REGRESSION.HCC1395_tumor.L005,22,QualityScore,Base Substitution,30880,222.35,22.00,22.00,0.00,After
REGRESSION.HCC1395_tumor.L005,23,QualityScore,Base Substitution,69207,442.02,22.00,23.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,24,QualityScore,Base Substitution,119091,435.64,24.00,24.00,0.00,After
REGRESSION.HCC1395_tumor.L005,25,QualityScore,Base Substitution,121617,209.09,27.00,25.00,2.00,After
REGRESSION.HCC1395_tumor.L005,28,QualityScore,Base Substitution,7605,4.55,28.00,28.00,0.00,After
REGRESSION.HCC1395_tumor.L005,29,QualityScore,Base Substitution,68303,89.32,29.00,29.00,0.00,After
REGRESSION.HCC1395_tumor.L005,30,QualityScore,Base Substitution,2574779,1581.06,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L005,31,QualityScore,Base Substitution,2869525,1273.29,33.00,31.00,2.00,After
REGRESSION.HCC1395_tumor.L005,32,QualityScore,Base Substitution,4719293,1085.37,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L005,33,QualityScore,Base Substitution,222395,39.85,35.00,33.00,2.00,After
REGRESSION.HCC1395_tumor.L005,45,QualityScore,Base Insertion,10982285,440.65,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,45,QualityScore,Base Deletion,10982285,941.02,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L005,8,QualityScore,Base Substitution,1911,357.18,7.00,8.00,-1.00,After
REGRESSION.HCC1395_tumor.L005,9,QualityScore,Base Substitution,53269,7386.56,9.00,9.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AA,Context,Base Substitution,828292,1890.90,26.00,24.98,1.02,After
REGRESSION.HCC1395_tumor.L006,AAA,Context,Base Insertion,294472,70.68,42.00,45.00,-3.00,After
REGRESSION.HCC1395_tumor.L006,AAA,Context,Base Deletion,294472,204.26,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L006,AAC,Context,Base Insertion,130733,5.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AAC,Context,Base Deletion,130733,8.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AAG,Context,Base Insertion,195794,8.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AAG,Context,Base Deletion,195794,10.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AAT,Context,Base Insertion,172592,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AAT,Context,Base Deletion,172592,15.44,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,AC,Context,Base Substitution,525272,1772.15,25.00,24.79,0.21,After
REGRESSION.HCC1395_tumor.L006,ACA,Context,Base Insertion,202998,19.75,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,ACA,Context,Base Deletion,202998,34.56,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L006,ACC,Context,Base Insertion,144547,8.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ACC,Context,Base Deletion,144547,5.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ACG,Context,Base Insertion,30173,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ACG,Context,Base Deletion,30173,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ACT,Context,Base Insertion,156444,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ACT,Context,Base Deletion,156444,11.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AG,Context,Base Substitution,791784,609.85,31.00,28.77,2.23,After
REGRESSION.HCC1395_tumor.L006,AGA,Context,Base Insertion,220346,6.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AGA,Context,Base Deletion,220346,10.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AGC,Context,Base Insertion,190000,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AGC,Context,Base Deletion,190000,8.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AGG,Context,Base Insertion,224703,11.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AGG,Context,Base Deletion,224703,9.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AGT,Context,Base Insertion,153268,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AGT,Context,Base Deletion,153268,4.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,AT,Context,Base Substitution,597545,620.77,30.00,27.66,2.34,After
REGRESSION.HCC1395_tumor.L006,ATA,Context,Base Insertion,134351,6.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ATA,Context,Base Deletion,134351,5.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ATC,Context,Base Insertion,119988,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ATC,Context,Base Deletion,119988,9.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ATG,Context,Base Insertion,173298,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ATG,Context,Base Deletion,173298,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ATT,Context,Base Insertion,180446,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,ATT,Context,Base Deletion,180446,7.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CA,Context,Base Substitution,847786,1832.74,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L006,CAA,Context,Base Insertion,170330,6.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CAA,Context,Base Deletion,170330,11.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CAC,Context,Base Insertion,181741,20.69,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,CAC,Context,Base Deletion,181741,32.39,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,CAG,Context,Base Insertion,289025,8.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CAG,Context,Base Deletion,289025,11.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CAT,Context,Base Insertion,168738,3.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CAT,Context,Base Deletion,168738,4.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CC,Context,Base Substitution,753152,2295.16,25.00,24.67,0.33,After
REGRESSION.HCC1395_tumor.L006,CCA,Context,Base Insertion,242258,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CCA,Context,Base Deletion,242258,7.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CCC,Context,Base Insertion,208506,11.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CCC,Context,Base Deletion,208506,14.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CCG,Context,Base Insertion,53658,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CCG,Context,Base Deletion,53658,5.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CCT,Context,Base Insertion,239280,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CCT,Context,Base Deletion,239280,11.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CG,Context,Base Substitution,159307,515.99,25.00,24.78,0.22,After
REGRESSION.HCC1395_tumor.L006,CGA,Context,Base Insertion,55467,0.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CGA,Context,Base Deletion,55467,0.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CGC,Context,Base Insertion,79362,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CGC,Context,Base Deletion,79362,7.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CGG,Context,Base Insertion,96682,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CGG,Context,Base Deletion,96682,7.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CGT,Context,Base Insertion,61794,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CGT,Context,Base Deletion,61794,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CT,Context,Base Substitution,827859,411.26,33.00,29.45,3.55,After
REGRESSION.HCC1395_tumor.L006,CTA,Context,Base Insertion,95543,0.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CTA,Context,Base Deletion,95543,6.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CTC,Context,Base Insertion,199445,5.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CTC,Context,Base Deletion,199445,18.22,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,CTG,Context,Base Insertion,287900,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CTG,Context,Base Deletion,287900,14.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CTT,Context,Base Insertion,207243,8.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,CTT,Context,Base Deletion,207243,9.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GA,Context,Base Substitution,695856,1050.59,28.00,26.55,1.45,After
REGRESSION.HCC1395_tumor.L006,GAA,Context,Base Insertion,207682,5.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GAA,Context,Base Deletion,207682,8.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GAC,Context,Base Insertion,117299,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GAC,Context,Base Deletion,117299,5.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GAG,Context,Base Insertion,205150,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GAG,Context,Base Deletion,205150,10.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GAT,Context,Base Insertion,124210,2.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GAT,Context,Base Deletion,124210,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GC,Context,Base Substitution,654183,1430.05,27.00,25.94,1.06,After
REGRESSION.HCC1395_tumor.L006,GCA,Context,Base Insertion,202515,5.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GCA,Context,Base Deletion,202515,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GCC,Context,Base Insertion,196392,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GCC,Context,Base Deletion,196392,10.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GCG,Context,Base Insertion,48494,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GCG,Context,Base Deletion,48494,5.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GCT,Context,Base Insertion,205887,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GCT,Context,Base Deletion,205887,4.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GG,Context,Base Substitution,780844,714.10,30.00,27.75,2.25,After
REGRESSION.HCC1395_tumor.L006,GGA,Context,Base Insertion,212419,28.18,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,GGA,Context,Base Deletion,212419,12.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GGC,Context,Base Insertion,193536,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GGC,Context,Base Deletion,193536,6.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GGG,Context,Base Insertion,216113,14.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GGG,Context,Base Deletion,216113,28.13,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,GGT,Context,Base Insertion,156319,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GGT,Context,Base Deletion,156319,4.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GT,Context,Base Substitution,582596,1017.10,28.00,26.95,1.05,After
REGRESSION.HCC1395_tumor.L006,GTA,Context,Base Insertion,100035,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GTA,Context,Base Deletion,100035,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GTC,Context,Base Insertion,125442,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GTC,Context,Base Deletion,125442,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GTG,Context,Base Insertion,196882,14.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GTG,Context,Base Deletion,196882,33.38,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,GTT,Context,Base Insertion,147483,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,GTT,Context,Base Deletion,147483,11.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TA,Context,Base Substitution,479623,1149.46,26.00,25.10,0.90,After
REGRESSION.HCC1395_tumor.L006,TAA,Context,Base Insertion,148750,6.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TAA,Context,Base Deletion,148750,13.98,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,TAC,Context,Base Insertion,92141,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TAC,Context,Base Deletion,92141,4.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TAG,Context,Base Insertion,95665,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TAG,Context,Base Deletion,95665,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TAT,Context,Base Insertion,127690,0.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TAT,Context,Base Deletion,127690,5.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TC,Context,Base Substitution,639666,1556.85,26.00,26.23,-0.23,After
REGRESSION.HCC1395_tumor.L006,TCA,Context,Base Insertion,193498,6.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TCA,Context,Base Deletion,193498,14.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TCC,Context,Base Insertion,198856,32.41,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,TCC,Context,Base Deletion,198856,11.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TCG,Context,Base Insertion,25831,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TCG,Context,Base Deletion,25831,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TCT,Context,Base Insertion,220679,5.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TCT,Context,Base Deletion,220679,13.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TG,Context,Base Substitution,832915,321.91,33.00,29.50,3.50,After
REGRESSION.HCC1395_tumor.L006,TGA,Context,Base Insertion,202293,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TGA,Context,Base Deletion,202293,6.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TGC,Context,Base Insertion,187072,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TGC,Context,Base Deletion,187072,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TGG,Context,Base Insertion,237558,5.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TGG,Context,Base Deletion,237558,9.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TGT,Context,Base Insertion,207398,13.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TGT,Context,Base Deletion,207398,32.36,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,TT,Context,Base Substitution,831450,895.78,30.00,27.70,2.30,After
REGRESSION.HCC1395_tumor.L006,TTA,Context,Base Insertion,146121,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TTA,Context,Base Deletion,146121,7.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TTC,Context,Base Insertion,190893,4.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TTC,Context,Base Deletion,190893,13.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TTG,Context,Base Insertion,168953,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TTG,Context,Base Deletion,168953,8.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,TTT,Context,Base Insertion,290752,60.74,42.00,45.00,-3.00,After
REGRESSION.HCC1395_tumor.L006,TTT,Context,Base Deletion,290752,157.23,38.00,45.00,-7.00,After
REGRESSION.HCC1395_tumor.L006,-1,Cycle,Base Substitution,38061,145.63,24.00,23.61,0.39,After
REGRESSION.HCC1395_tumor.L006,-10,Cycle,Base Substitution,38446,53.53,28.00,27.44,0.56,After
REGRESSION.HCC1395_tumor.L006,-10,Cycle,Base Insertion,38446,0.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-10,Cycle,Base Deletion,38446,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-100,Cycle,Base Substitution,35875,78.70,27.00,26.29,0.71,After
REGRESSION.HCC1395_tumor.L006,-100,Cycle,Base Insertion,35564,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-100,Cycle,Base Deletion,35564,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-101,Cycle,Base Substitution,35890,68.98,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L006,-101,Cycle,Base Insertion,35589,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-101,Cycle,Base Deletion,35589,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-102,Cycle,Base Substitution,35804,87.32,26.00,26.39,-0.39,After
REGRESSION.HCC1395_tumor.L006,-102,Cycle,Base Insertion,35493,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-102,Cycle,Base Deletion,35493,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-103,Cycle,Base Substitution,35679,65.61,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L006,-103,Cycle,Base Insertion,35383,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-103,Cycle,Base Deletion,35383,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-104,Cycle,Base Substitution,35663,73.82,27.00,26.27,0.73,After
REGRESSION.HCC1395_tumor.L006,-104,Cycle,Base Insertion,35362,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-104,Cycle,Base Deletion,35362,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-105,Cycle,Base Substitution,35631,75.83,27.00,26.38,0.62,After
REGRESSION.HCC1395_tumor.L006,-105,Cycle,Base Insertion,35339,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-105,Cycle,Base Deletion,35339,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-106,Cycle,Base Substitution,35493,70.76,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L006,-106,Cycle,Base Insertion,35208,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-106,Cycle,Base Deletion,35208,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-107,Cycle,Base Substitution,35436,68.17,27.00,26.33,0.67,After
REGRESSION.HCC1395_tumor.L006,-107,Cycle,Base Insertion,35133,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-107,Cycle,Base Deletion,35133,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-108,Cycle,Base Substitution,35408,92.94,26.00,26.31,-0.31,After
REGRESSION.HCC1395_tumor.L006,-108,Cycle,Base Insertion,35102,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-108,Cycle,Base Deletion,35102,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-109,Cycle,Base Substitution,35212,68.84,27.00,26.44,0.56,After
REGRESSION.HCC1395_tumor.L006,-109,Cycle,Base Insertion,34907,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-109,Cycle,Base Deletion,34907,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-11,Cycle,Base Substitution,38514,49.87,28.00,27.52,0.48,After
REGRESSION.HCC1395_tumor.L006,-11,Cycle,Base Insertion,38514,2.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-11,Cycle,Base Deletion,38514,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-110,Cycle,Base Substitution,35146,71.41,27.00,26.24,0.76,After
REGRESSION.HCC1395_tumor.L006,-110,Cycle,Base Insertion,34835,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-110,Cycle,Base Deletion,34835,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-111,Cycle,Base Substitution,35130,65.81,27.00,26.26,0.74,After
REGRESSION.HCC1395_tumor.L006,-111,Cycle,Base Insertion,34816,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-111,Cycle,Base Deletion,34816,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-112,Cycle,Base Substitution,35105,91.66,26.00,26.31,-0.31,After
REGRESSION.HCC1395_tumor.L006,-112,Cycle,Base Insertion,34765,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-112,Cycle,Base Deletion,34765,2.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-113,Cycle,Base Substitution,35068,77.98,26.00,26.33,-0.33,After
REGRESSION.HCC1395_tumor.L006,-113,Cycle,Base Insertion,34713,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-113,Cycle,Base Deletion,34713,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-114,Cycle,Base Substitution,34916,70.42,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L006,-114,Cycle,Base Insertion,34551,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-114,Cycle,Base Deletion,34551,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-115,Cycle,Base Substitution,34739,81.63,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L006,-115,Cycle,Base Insertion,34366,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-115,Cycle,Base Deletion,34366,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-116,Cycle,Base Substitution,34631,92.00,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L006,-116,Cycle,Base Insertion,34268,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-116,Cycle,Base Deletion,34268,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-117,Cycle,Base Substitution,34648,90.62,26.00,26.06,-0.06,After
REGRESSION.HCC1395_tumor.L006,-117,Cycle,Base Insertion,34274,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-117,Cycle,Base Deletion,34274,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-118,Cycle,Base Substitution,34527,90.76,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L006,-118,Cycle,Base Insertion,34151,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-118,Cycle,Base Deletion,34151,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-119,Cycle,Base Substitution,34564,110.14,25.00,25.44,-0.44,After
REGRESSION.HCC1395_tumor.L006,-119,Cycle,Base Insertion,34189,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-119,Cycle,Base Deletion,34189,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-12,Cycle,Base Substitution,38463,47.02,29.00,28.04,0.96,After
REGRESSION.HCC1395_tumor.L006,-12,Cycle,Base Insertion,38463,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-12,Cycle,Base Deletion,38463,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-120,Cycle,Base Substitution,34442,77.38,26.00,26.19,-0.19,After
REGRESSION.HCC1395_tumor.L006,-120,Cycle,Base Insertion,34081,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-120,Cycle,Base Deletion,34081,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-121,Cycle,Base Substitution,34222,101.71,25.00,25.45,-0.45,After
REGRESSION.HCC1395_tumor.L006,-121,Cycle,Base Insertion,33840,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-121,Cycle,Base Deletion,33840,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-122,Cycle,Base Substitution,34103,73.99,27.00,26.21,0.79,After
REGRESSION.HCC1395_tumor.L006,-122,Cycle,Base Insertion,33725,0.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-122,Cycle,Base Deletion,33725,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-123,Cycle,Base Substitution,34157,84.09,26.00,25.94,0.06,After
REGRESSION.HCC1395_tumor.L006,-123,Cycle,Base Insertion,33790,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-123,Cycle,Base Deletion,33790,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-124,Cycle,Base Substitution,34034,87.17,26.00,26.03,-0.03,After
REGRESSION.HCC1395_tumor.L006,-124,Cycle,Base Insertion,33670,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-124,Cycle,Base Deletion,33670,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-125,Cycle,Base Substitution,33902,77.46,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L006,-125,Cycle,Base Insertion,33526,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-125,Cycle,Base Deletion,33526,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-126,Cycle,Base Substitution,33804,76.00,26.00,26.24,-0.24,After
REGRESSION.HCC1395_tumor.L006,-126,Cycle,Base Insertion,33425,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-126,Cycle,Base Deletion,33425,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-127,Cycle,Base Substitution,33792,77.73,26.00,26.19,-0.19,After
REGRESSION.HCC1395_tumor.L006,-127,Cycle,Base Insertion,33408,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-127,Cycle,Base Deletion,33408,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-128,Cycle,Base Substitution,33701,81.17,26.00,26.06,-0.06,After
REGRESSION.HCC1395_tumor.L006,-128,Cycle,Base Insertion,33304,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-128,Cycle,Base Deletion,33304,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-129,Cycle,Base Substitution,33653,78.73,26.00,26.28,-0.28,After
REGRESSION.HCC1395_tumor.L006,-129,Cycle,Base Insertion,33233,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-129,Cycle,Base Deletion,33233,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-13,Cycle,Base Substitution,38465,68.13,27.00,27.58,-0.58,After
REGRESSION.HCC1395_tumor.L006,-13,Cycle,Base Insertion,38465,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-13,Cycle,Base Deletion,38465,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-130,Cycle,Base Substitution,33488,77.61,26.00,26.19,-0.19,After
REGRESSION.HCC1395_tumor.L006,-130,Cycle,Base Insertion,33087,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-130,Cycle,Base Deletion,33087,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-131,Cycle,Base Substitution,33429,70.59,27.00,26.11,0.89,After
REGRESSION.HCC1395_tumor.L006,-131,Cycle,Base Insertion,33028,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-131,Cycle,Base Deletion,33028,2.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-132,Cycle,Base Substitution,33268,74.36,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L006,-132,Cycle,Base Insertion,32873,0.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-132,Cycle,Base Deletion,32873,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-133,Cycle,Base Substitution,33091,87.20,26.00,25.89,0.11,After
REGRESSION.HCC1395_tumor.L006,-133,Cycle,Base Insertion,32713,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-133,Cycle,Base Deletion,32713,2.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-134,Cycle,Base Substitution,32966,62.61,27.00,26.23,0.77,After
REGRESSION.HCC1395_tumor.L006,-134,Cycle,Base Insertion,32577,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-134,Cycle,Base Deletion,32577,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-135,Cycle,Base Substitution,32901,71.58,27.00,26.02,0.98,After
REGRESSION.HCC1395_tumor.L006,-135,Cycle,Base Insertion,32497,0.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-135,Cycle,Base Deletion,32497,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-136,Cycle,Base Substitution,32903,76.34,26.00,26.17,-0.17,After
REGRESSION.HCC1395_tumor.L006,-136,Cycle,Base Insertion,32480,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-136,Cycle,Base Deletion,32480,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-137,Cycle,Base Substitution,32819,81.34,26.00,26.08,-0.08,After
REGRESSION.HCC1395_tumor.L006,-137,Cycle,Base Insertion,32367,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-137,Cycle,Base Deletion,32367,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-138,Cycle,Base Substitution,32707,83.24,26.00,25.37,0.63,After
REGRESSION.HCC1395_tumor.L006,-138,Cycle,Base Insertion,32219,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-138,Cycle,Base Deletion,32219,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-139,Cycle,Base Substitution,32618,72.28,27.00,26.09,0.91,After
REGRESSION.HCC1395_tumor.L006,-139,Cycle,Base Insertion,32098,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-139,Cycle,Base Deletion,32098,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-14,Cycle,Base Substitution,38536,55.84,28.00,27.61,0.39,After
REGRESSION.HCC1395_tumor.L006,-14,Cycle,Base Insertion,38536,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-14,Cycle,Base Deletion,38536,2.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-140,Cycle,Base Substitution,32542,65.21,27.00,26.03,0.97,After
REGRESSION.HCC1395_tumor.L006,-140,Cycle,Base Insertion,32029,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-140,Cycle,Base Deletion,32029,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-141,Cycle,Base Substitution,32342,61.06,27.00,26.11,0.89,After
REGRESSION.HCC1395_tumor.L006,-141,Cycle,Base Insertion,31808,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-141,Cycle,Base Deletion,31808,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-142,Cycle,Base Substitution,32144,69.05,26.00,25.95,0.05,After
REGRESSION.HCC1395_tumor.L006,-142,Cycle,Base Insertion,31540,0.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-142,Cycle,Base Deletion,31540,0.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-143,Cycle,Base Substitution,31994,72.08,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L006,-143,Cycle,Base Insertion,31308,0.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-143,Cycle,Base Deletion,31308,0.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-144,Cycle,Base Substitution,31848,32.91,28.00,26.90,1.10,After
REGRESSION.HCC1395_tumor.L006,-144,Cycle,Base Insertion,31123,0.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-144,Cycle,Base Deletion,31123,0.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-145,Cycle,Base Substitution,31636,48.50,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L006,-145,Cycle,Base Insertion,24461,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-145,Cycle,Base Deletion,24461,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-146,Cycle,Base Substitution,31419,20.43,28.00,26.05,1.95,After
REGRESSION.HCC1395_tumor.L006,-146,Cycle,Base Insertion,24374,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-146,Cycle,Base Deletion,24374,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-147,Cycle,Base Substitution,31329,30.83,26.00,22.21,3.79,After
REGRESSION.HCC1395_tumor.L006,-148,Cycle,Base Substitution,31189,19.38,24.00,16.05,7.95,After
REGRESSION.HCC1395_tumor.L006,-149,Cycle,Base Substitution,19387,17.14,22.00,14.11,7.89,After
REGRESSION.HCC1395_tumor.L006,-15,Cycle,Base Substitution,38431,38.41,29.00,27.55,1.45,After
REGRESSION.HCC1395_tumor.L006,-15,Cycle,Base Insertion,38431,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-15,Cycle,Base Deletion,38431,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-150,Cycle,Base Substitution,6838,17.22,26.00,26.73,-0.73,After
REGRESSION.HCC1395_tumor.L006,-16,Cycle,Base Substitution,38473,48.16,28.00,27.54,0.46,After
REGRESSION.HCC1395_tumor.L006,-16,Cycle,Base Insertion,38473,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-16,Cycle,Base Deletion,38473,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-17,Cycle,Base Substitution,38470,45.21,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L006,-17,Cycle,Base Insertion,38469,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-17,Cycle,Base Deletion,38469,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-18,Cycle,Base Substitution,38456,56.14,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L006,-18,Cycle,Base Insertion,38455,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-18,Cycle,Base Deletion,38455,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-19,Cycle,Base Substitution,38455,37.02,29.00,27.80,1.20,After
REGRESSION.HCC1395_tumor.L006,-19,Cycle,Base Insertion,38454,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-19,Cycle,Base Deletion,38454,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-2,Cycle,Base Substitution,38500,126.14,25.00,25.58,-0.58,After
REGRESSION.HCC1395_tumor.L006,-20,Cycle,Base Substitution,38474,59.24,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L006,-20,Cycle,Base Insertion,38473,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-20,Cycle,Base Deletion,38473,5.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-21,Cycle,Base Substitution,38366,50.98,28.00,27.53,0.47,After
REGRESSION.HCC1395_tumor.L006,-21,Cycle,Base Insertion,38366,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-21,Cycle,Base Deletion,38366,4.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-22,Cycle,Base Substitution,38354,50.81,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L006,-22,Cycle,Base Insertion,38353,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-22,Cycle,Base Deletion,38353,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-23,Cycle,Base Substitution,38437,39.94,29.00,27.94,1.06,After
REGRESSION.HCC1395_tumor.L006,-23,Cycle,Base Insertion,38436,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-23,Cycle,Base Deletion,38436,6.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-24,Cycle,Base Substitution,38411,59.11,28.00,27.59,0.41,After
REGRESSION.HCC1395_tumor.L006,-24,Cycle,Base Insertion,38410,2.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-24,Cycle,Base Deletion,38410,5.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-25,Cycle,Base Substitution,38369,44.92,29.00,28.25,0.75,After
REGRESSION.HCC1395_tumor.L006,-25,Cycle,Base Insertion,38369,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-25,Cycle,Base Deletion,38369,4.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-26,Cycle,Base Substitution,38351,62.11,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L006,-26,Cycle,Base Insertion,38351,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-26,Cycle,Base Deletion,38351,4.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-27,Cycle,Base Substitution,38365,35.31,29.00,27.32,1.68,After
REGRESSION.HCC1395_tumor.L006,-27,Cycle,Base Insertion,38364,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-27,Cycle,Base Deletion,38364,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-28,Cycle,Base Substitution,38372,59.77,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L006,-28,Cycle,Base Insertion,38372,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-28,Cycle,Base Deletion,38372,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-29,Cycle,Base Substitution,38168,48.45,28.00,26.81,1.19,After
REGRESSION.HCC1395_tumor.L006,-29,Cycle,Base Insertion,38164,2.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-29,Cycle,Base Deletion,38164,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-3,Cycle,Base Substitution,38706,136.89,25.00,25.74,-0.74,After
REGRESSION.HCC1395_tumor.L006,-30,Cycle,Base Substitution,38260,52.81,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L006,-30,Cycle,Base Insertion,38256,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-30,Cycle,Base Deletion,38256,5.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-31,Cycle,Base Substitution,38185,69.21,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L006,-31,Cycle,Base Insertion,38182,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-31,Cycle,Base Deletion,38182,4.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-32,Cycle,Base Substitution,38277,41.84,28.00,26.70,1.30,After
REGRESSION.HCC1395_tumor.L006,-32,Cycle,Base Insertion,38273,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-32,Cycle,Base Deletion,38273,5.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-33,Cycle,Base Substitution,38188,65.78,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L006,-33,Cycle,Base Insertion,38185,2.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-33,Cycle,Base Deletion,38185,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-34,Cycle,Base Substitution,38263,61.84,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L006,-34,Cycle,Base Insertion,38260,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-34,Cycle,Base Deletion,38260,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-35,Cycle,Base Substitution,38307,52.90,28.00,26.84,1.16,After
REGRESSION.HCC1395_tumor.L006,-35,Cycle,Base Insertion,38301,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-35,Cycle,Base Deletion,38301,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-36,Cycle,Base Substitution,38278,74.53,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L006,-36,Cycle,Base Insertion,38272,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-36,Cycle,Base Deletion,38272,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-37,Cycle,Base Substitution,38286,41.44,29.00,27.40,1.60,After
REGRESSION.HCC1395_tumor.L006,-37,Cycle,Base Insertion,38280,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-37,Cycle,Base Deletion,38280,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-38,Cycle,Base Substitution,38218,53.54,28.00,26.56,1.44,After
REGRESSION.HCC1395_tumor.L006,-38,Cycle,Base Insertion,38211,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-38,Cycle,Base Deletion,38211,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-39,Cycle,Base Substitution,38219,50.36,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L006,-39,Cycle,Base Insertion,38213,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-39,Cycle,Base Deletion,38213,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-4,Cycle,Base Substitution,38482,80.77,27.00,26.20,0.80,After
REGRESSION.HCC1395_tumor.L006,-40,Cycle,Base Substitution,38130,43.72,28.00,26.92,1.08,After
REGRESSION.HCC1395_tumor.L006,-40,Cycle,Base Insertion,38123,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-40,Cycle,Base Deletion,38123,2.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-41,Cycle,Base Substitution,38232,65.97,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L006,-41,Cycle,Base Insertion,38225,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-41,Cycle,Base Deletion,38225,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-42,Cycle,Base Substitution,38122,56.84,28.00,26.71,1.29,After
REGRESSION.HCC1395_tumor.L006,-42,Cycle,Base Insertion,38113,2.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-42,Cycle,Base Deletion,38113,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-43,Cycle,Base Substitution,38131,55.89,28.00,26.74,1.26,After
REGRESSION.HCC1395_tumor.L006,-43,Cycle,Base Insertion,38125,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-43,Cycle,Base Deletion,38125,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-44,Cycle,Base Substitution,38022,63.34,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L006,-44,Cycle,Base Insertion,38017,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-44,Cycle,Base Deletion,38017,3.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-45,Cycle,Base Substitution,38145,55.19,28.00,26.87,1.13,After
REGRESSION.HCC1395_tumor.L006,-45,Cycle,Base Insertion,38134,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-45,Cycle,Base Deletion,38134,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-46,Cycle,Base Substitution,37988,59.48,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L006,-46,Cycle,Base Insertion,37980,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-46,Cycle,Base Deletion,37980,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-47,Cycle,Base Substitution,38145,60.10,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L006,-47,Cycle,Base Insertion,38134,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-47,Cycle,Base Deletion,38134,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-48,Cycle,Base Substitution,38122,63.18,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L006,-48,Cycle,Base Insertion,38113,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-48,Cycle,Base Deletion,38113,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-49,Cycle,Base Substitution,38081,56.83,28.00,26.75,1.25,After
REGRESSION.HCC1395_tumor.L006,-49,Cycle,Base Insertion,38074,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-49,Cycle,Base Deletion,38074,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-5,Cycle,Base Substitution,38505,63.91,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L006,-5,Cycle,Base Insertion,38505,0.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-5,Cycle,Base Deletion,38505,0.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-50,Cycle,Base Substitution,38047,69.33,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L006,-50,Cycle,Base Insertion,38030,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-50,Cycle,Base Deletion,38030,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-51,Cycle,Base Substitution,38114,64.01,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L006,-51,Cycle,Base Insertion,38098,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-51,Cycle,Base Deletion,38098,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-52,Cycle,Base Substitution,38126,70.49,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L006,-52,Cycle,Base Insertion,38106,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-52,Cycle,Base Deletion,38106,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-53,Cycle,Base Substitution,38043,56.22,28.00,26.80,1.20,After
REGRESSION.HCC1395_tumor.L006,-53,Cycle,Base Insertion,38014,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-53,Cycle,Base Deletion,38014,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-54,Cycle,Base Substitution,38038,63.64,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L006,-54,Cycle,Base Insertion,38007,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-54,Cycle,Base Deletion,38007,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-55,Cycle,Base Substitution,37795,59.48,28.00,27.13,0.87,After
REGRESSION.HCC1395_tumor.L006,-55,Cycle,Base Insertion,37761,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-55,Cycle,Base Deletion,37761,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-56,Cycle,Base Substitution,38044,52.95,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L006,-56,Cycle,Base Insertion,38001,1.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-56,Cycle,Base Deletion,38001,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-57,Cycle,Base Substitution,37902,65.36,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L006,-57,Cycle,Base Insertion,37861,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-57,Cycle,Base Deletion,37861,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-58,Cycle,Base Substitution,38061,71.34,27.00,27.15,-0.15,After
REGRESSION.HCC1395_tumor.L006,-58,Cycle,Base Insertion,38015,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-58,Cycle,Base Deletion,38015,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-59,Cycle,Base Substitution,37800,48.80,28.00,26.98,1.02,After
REGRESSION.HCC1395_tumor.L006,-59,Cycle,Base Insertion,37742,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-59,Cycle,Base Deletion,37742,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-6,Cycle,Base Substitution,38463,68.14,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L006,-6,Cycle,Base Insertion,38463,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-6,Cycle,Base Deletion,38463,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-60,Cycle,Base Substitution,37800,66.24,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L006,-60,Cycle,Base Insertion,37740,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-60,Cycle,Base Deletion,37740,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-61,Cycle,Base Substitution,37774,65.09,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L006,-61,Cycle,Base Insertion,37704,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-61,Cycle,Base Deletion,37704,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-62,Cycle,Base Substitution,37805,59.27,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L006,-62,Cycle,Base Insertion,37734,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-62,Cycle,Base Deletion,37734,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-63,Cycle,Base Substitution,37909,48.62,28.00,26.88,1.12,After
REGRESSION.HCC1395_tumor.L006,-63,Cycle,Base Insertion,37834,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-63,Cycle,Base Deletion,37834,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-64,Cycle,Base Substitution,37806,45.53,28.00,26.74,1.26,After
REGRESSION.HCC1395_tumor.L006,-64,Cycle,Base Insertion,37725,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-64,Cycle,Base Deletion,37725,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-65,Cycle,Base Substitution,37746,70.59,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L006,-65,Cycle,Base Insertion,37666,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-65,Cycle,Base Deletion,37666,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-66,Cycle,Base Substitution,37674,56.55,28.00,26.67,1.33,After
REGRESSION.HCC1395_tumor.L006,-66,Cycle,Base Insertion,37580,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-66,Cycle,Base Deletion,37580,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-67,Cycle,Base Substitution,37701,71.75,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L006,-67,Cycle,Base Insertion,37606,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-67,Cycle,Base Deletion,37606,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-68,Cycle,Base Substitution,37685,73.22,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L006,-68,Cycle,Base Insertion,37592,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-68,Cycle,Base Deletion,37592,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-69,Cycle,Base Substitution,37710,43.24,29.00,27.12,1.88,After
REGRESSION.HCC1395_tumor.L006,-69,Cycle,Base Insertion,37601,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-69,Cycle,Base Deletion,37601,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-7,Cycle,Base Substitution,38408,80.50,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L006,-7,Cycle,Base Insertion,38408,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-7,Cycle,Base Deletion,38408,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-70,Cycle,Base Substitution,37737,72.67,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L006,-70,Cycle,Base Insertion,37621,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-70,Cycle,Base Deletion,37621,4.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-71,Cycle,Base Substitution,37686,72.51,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L006,-71,Cycle,Base Insertion,37549,2.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-71,Cycle,Base Deletion,37549,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-72,Cycle,Base Substitution,37482,71.67,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L006,-72,Cycle,Base Insertion,37345,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-72,Cycle,Base Deletion,37345,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-73,Cycle,Base Substitution,37461,77.94,27.00,26.45,0.55,After
REGRESSION.HCC1395_tumor.L006,-73,Cycle,Base Insertion,37304,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-73,Cycle,Base Deletion,37304,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-74,Cycle,Base Substitution,37525,78.90,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L006,-74,Cycle,Base Insertion,37376,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-74,Cycle,Base Deletion,37376,4.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-75,Cycle,Base Substitution,37476,66.59,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L006,-75,Cycle,Base Insertion,37326,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-75,Cycle,Base Deletion,37326,5.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-76,Cycle,Base Substitution,37434,59.52,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L006,-76,Cycle,Base Insertion,37271,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-76,Cycle,Base Deletion,37271,3.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-77,Cycle,Base Substitution,37429,69.30,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L006,-77,Cycle,Base Insertion,37254,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-77,Cycle,Base Deletion,37254,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-78,Cycle,Base Substitution,37249,86.14,26.00,26.72,-0.72,After
REGRESSION.HCC1395_tumor.L006,-78,Cycle,Base Insertion,37067,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-78,Cycle,Base Deletion,37067,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-79,Cycle,Base Substitution,37263,57.66,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L006,-79,Cycle,Base Insertion,37074,1.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-79,Cycle,Base Deletion,37074,4.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-8,Cycle,Base Substitution,38586,66.46,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L006,-8,Cycle,Base Insertion,38586,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-8,Cycle,Base Deletion,38586,2.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-80,Cycle,Base Substitution,37417,52.94,28.00,26.82,1.18,After
REGRESSION.HCC1395_tumor.L006,-80,Cycle,Base Insertion,37216,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-80,Cycle,Base Deletion,37216,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-81,Cycle,Base Substitution,37211,81.10,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L006,-81,Cycle,Base Insertion,36993,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-81,Cycle,Base Deletion,36993,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-82,Cycle,Base Substitution,37208,79.59,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L006,-82,Cycle,Base Insertion,36982,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-82,Cycle,Base Deletion,36982,4.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-83,Cycle,Base Substitution,37022,70.99,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L006,-83,Cycle,Base Insertion,36780,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-83,Cycle,Base Deletion,36780,5.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-84,Cycle,Base Substitution,37059,59.00,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L006,-84,Cycle,Base Insertion,36821,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-84,Cycle,Base Deletion,36821,5.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-85,Cycle,Base Substitution,36994,63.53,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L006,-85,Cycle,Base Insertion,36762,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-85,Cycle,Base Deletion,36762,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-86,Cycle,Base Substitution,36896,73.28,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L006,-86,Cycle,Base Insertion,36664,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-86,Cycle,Base Deletion,36664,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-87,Cycle,Base Substitution,36816,70.11,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L006,-87,Cycle,Base Insertion,36582,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-87,Cycle,Base Deletion,36582,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-88,Cycle,Base Substitution,36840,66.93,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L006,-88,Cycle,Base Insertion,36601,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-88,Cycle,Base Deletion,36601,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-89,Cycle,Base Substitution,36787,76.81,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L006,-89,Cycle,Base Insertion,36537,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-89,Cycle,Base Deletion,36537,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-9,Cycle,Base Substitution,38559,75.81,27.00,27.22,-0.22,After
REGRESSION.HCC1395_tumor.L006,-9,Cycle,Base Insertion,38559,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-9,Cycle,Base Deletion,38559,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-90,Cycle,Base Substitution,36645,79.65,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L006,-90,Cycle,Base Insertion,36389,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-90,Cycle,Base Deletion,36389,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-91,Cycle,Base Substitution,36724,74.32,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L006,-91,Cycle,Base Insertion,36465,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-91,Cycle,Base Deletion,36465,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-92,Cycle,Base Substitution,36509,71.89,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L006,-92,Cycle,Base Insertion,36236,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-92,Cycle,Base Deletion,36236,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-93,Cycle,Base Substitution,36346,79.35,27.00,26.36,0.64,After
REGRESSION.HCC1395_tumor.L006,-93,Cycle,Base Insertion,36067,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-93,Cycle,Base Deletion,36067,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-94,Cycle,Base Substitution,36367,74.11,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L006,-94,Cycle,Base Insertion,36076,2.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-94,Cycle,Base Deletion,36076,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-95,Cycle,Base Substitution,36370,92.87,26.00,26.50,-0.50,After
REGRESSION.HCC1395_tumor.L006,-95,Cycle,Base Insertion,36079,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-95,Cycle,Base Deletion,36079,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-96,Cycle,Base Substitution,36242,76.87,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L006,-96,Cycle,Base Insertion,35948,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-96,Cycle,Base Deletion,35948,5.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-97,Cycle,Base Substitution,36248,66.26,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L006,-97,Cycle,Base Insertion,35943,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-97,Cycle,Base Deletion,35943,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-98,Cycle,Base Substitution,36242,67.21,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L006,-98,Cycle,Base Insertion,35936,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-98,Cycle,Base Deletion,35936,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-99,Cycle,Base Substitution,36068,77.30,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L006,-99,Cycle,Base Insertion,35770,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,-99,Cycle,Base Deletion,35770,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,1,Cycle,Base Substitution,38147,78.90,27.00,26.11,0.89,After
REGRESSION.HCC1395_tumor.L006,10,Cycle,Base Substitution,38562,44.92,28.00,27.48,0.52,After
REGRESSION.HCC1395_tumor.L006,10,Cycle,Base Insertion,38562,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,10,Cycle,Base Deletion,38562,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,100,Cycle,Base Substitution,35909,59.88,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L006,100,Cycle,Base Insertion,35609,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,100,Cycle,Base Deletion,35609,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,101,Cycle,Base Substitution,35887,56.81,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L006,101,Cycle,Base Insertion,35596,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,101,Cycle,Base Deletion,35596,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,102,Cycle,Base Substitution,35846,44.88,28.00,27.18,0.82,After
REGRESSION.HCC1395_tumor.L006,102,Cycle,Base Insertion,35524,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,102,Cycle,Base Deletion,35524,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,103,Cycle,Base Substitution,35849,61.09,28.00,27.22,0.78,After
REGRESSION.HCC1395_tumor.L006,103,Cycle,Base Insertion,35544,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,103,Cycle,Base Deletion,35544,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,104,Cycle,Base Substitution,35663,73.23,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L006,104,Cycle,Base Insertion,35375,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,104,Cycle,Base Deletion,35375,4.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,105,Cycle,Base Substitution,35652,56.81,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L006,105,Cycle,Base Insertion,35358,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,105,Cycle,Base Deletion,35358,5.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,106,Cycle,Base Substitution,35584,57.16,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L006,106,Cycle,Base Insertion,35314,0.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,106,Cycle,Base Deletion,35314,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,107,Cycle,Base Substitution,35483,78.10,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L006,107,Cycle,Base Insertion,35161,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,107,Cycle,Base Deletion,35161,4.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,108,Cycle,Base Substitution,35331,91.66,26.00,26.03,-0.03,After
REGRESSION.HCC1395_tumor.L006,108,Cycle,Base Insertion,35020,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,108,Cycle,Base Deletion,35020,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,109,Cycle,Base Substitution,35319,68.90,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L006,109,Cycle,Base Insertion,35012,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,109,Cycle,Base Deletion,35012,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,11,Cycle,Base Substitution,38516,37.90,29.00,27.59,1.41,After
REGRESSION.HCC1395_tumor.L006,11,Cycle,Base Insertion,38516,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,11,Cycle,Base Deletion,38516,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,110,Cycle,Base Substitution,35172,93.08,26.00,26.22,-0.22,After
REGRESSION.HCC1395_tumor.L006,110,Cycle,Base Insertion,34857,1.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,110,Cycle,Base Deletion,34857,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,111,Cycle,Base Substitution,35046,64.75,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L006,111,Cycle,Base Insertion,34745,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,111,Cycle,Base Deletion,34745,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,112,Cycle,Base Substitution,35005,55.67,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L006,112,Cycle,Base Insertion,34683,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,112,Cycle,Base Deletion,34683,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,113,Cycle,Base Substitution,34927,75.60,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L006,113,Cycle,Base Insertion,34582,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,113,Cycle,Base Deletion,34582,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,114,Cycle,Base Substitution,35001,66.29,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L006,114,Cycle,Base Insertion,34612,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,114,Cycle,Base Deletion,34612,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,115,Cycle,Base Substitution,34859,62.99,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L006,115,Cycle,Base Insertion,34499,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,115,Cycle,Base Deletion,34499,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,116,Cycle,Base Substitution,34799,65.67,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L006,116,Cycle,Base Insertion,34434,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,116,Cycle,Base Deletion,34434,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,117,Cycle,Base Substitution,34828,77.61,26.00,26.61,-0.61,After
REGRESSION.HCC1395_tumor.L006,117,Cycle,Base Insertion,34467,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,117,Cycle,Base Deletion,34467,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,118,Cycle,Base Substitution,34596,70.61,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L006,118,Cycle,Base Insertion,34231,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,118,Cycle,Base Deletion,34231,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,119,Cycle,Base Substitution,34466,75.62,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L006,119,Cycle,Base Insertion,34090,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,119,Cycle,Base Deletion,34090,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,12,Cycle,Base Substitution,38440,42.12,29.00,27.53,1.47,After
REGRESSION.HCC1395_tumor.L006,12,Cycle,Base Insertion,38440,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,12,Cycle,Base Deletion,38440,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,120,Cycle,Base Substitution,34385,64.63,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L006,120,Cycle,Base Insertion,34013,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,120,Cycle,Base Deletion,34013,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,121,Cycle,Base Substitution,34387,66.52,27.00,26.30,0.70,After
REGRESSION.HCC1395_tumor.L006,121,Cycle,Base Insertion,34025,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,121,Cycle,Base Deletion,34025,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,122,Cycle,Base Substitution,34300,70.43,27.00,26.50,0.50,After
REGRESSION.HCC1395_tumor.L006,122,Cycle,Base Insertion,33926,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,122,Cycle,Base Deletion,33926,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,123,Cycle,Base Substitution,34098,74.69,27.00,26.30,0.70,After
REGRESSION.HCC1395_tumor.L006,123,Cycle,Base Insertion,33747,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,123,Cycle,Base Deletion,33747,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,124,Cycle,Base Substitution,34089,75.12,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L006,124,Cycle,Base Insertion,33736,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,124,Cycle,Base Deletion,33736,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,125,Cycle,Base Substitution,33856,56.87,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L006,125,Cycle,Base Insertion,33490,5.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,125,Cycle,Base Deletion,33490,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,126,Cycle,Base Substitution,33815,85.66,26.00,26.35,-0.35,After
REGRESSION.HCC1395_tumor.L006,126,Cycle,Base Insertion,33444,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,126,Cycle,Base Deletion,33444,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,127,Cycle,Base Substitution,33767,62.32,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L006,127,Cycle,Base Insertion,33404,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,127,Cycle,Base Deletion,33404,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,128,Cycle,Base Substitution,33636,66.01,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L006,128,Cycle,Base Insertion,33268,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,128,Cycle,Base Deletion,33268,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,129,Cycle,Base Substitution,33583,73.92,27.00,26.31,0.69,After
REGRESSION.HCC1395_tumor.L006,129,Cycle,Base Insertion,33182,0.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,129,Cycle,Base Deletion,33182,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,13,Cycle,Base Substitution,38445,48.32,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L006,13,Cycle,Base Insertion,38445,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,13,Cycle,Base Deletion,38445,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,130,Cycle,Base Substitution,33439,66.93,27.00,26.32,0.68,After
REGRESSION.HCC1395_tumor.L006,130,Cycle,Base Insertion,33062,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,130,Cycle,Base Deletion,33062,2.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,131,Cycle,Base Substitution,33461,68.53,27.00,26.44,0.56,After
REGRESSION.HCC1395_tumor.L006,131,Cycle,Base Insertion,33061,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,131,Cycle,Base Deletion,33061,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,132,Cycle,Base Substitution,33432,58.73,27.00,26.33,0.67,After
REGRESSION.HCC1395_tumor.L006,132,Cycle,Base Insertion,33034,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,132,Cycle,Base Deletion,33034,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,133,Cycle,Base Substitution,33229,71.55,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L006,133,Cycle,Base Insertion,32869,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,133,Cycle,Base Deletion,32869,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,134,Cycle,Base Substitution,33165,66.09,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L006,134,Cycle,Base Insertion,32770,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,134,Cycle,Base Deletion,32770,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,135,Cycle,Base Substitution,33099,78.70,26.00,26.46,-0.46,After
REGRESSION.HCC1395_tumor.L006,135,Cycle,Base Insertion,32716,0.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,135,Cycle,Base Deletion,32716,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,136,Cycle,Base Substitution,32890,55.81,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L006,136,Cycle,Base Insertion,32486,0.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,136,Cycle,Base Deletion,32486,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,137,Cycle,Base Substitution,32898,57.95,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L006,137,Cycle,Base Insertion,32499,0.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,137,Cycle,Base Deletion,32499,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,138,Cycle,Base Substitution,32789,66.43,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L006,138,Cycle,Base Insertion,32389,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,138,Cycle,Base Deletion,32389,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,139,Cycle,Base Substitution,32753,65.56,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L006,139,Cycle,Base Insertion,32323,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,139,Cycle,Base Deletion,32323,3.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,14,Cycle,Base Substitution,38477,48.47,28.00,27.53,0.47,After
REGRESSION.HCC1395_tumor.L006,14,Cycle,Base Insertion,38477,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,14,Cycle,Base Deletion,38477,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,140,Cycle,Base Substitution,32554,63.03,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L006,140,Cycle,Base Insertion,32135,0.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,140,Cycle,Base Deletion,32135,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,141,Cycle,Base Substitution,32447,74.52,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L006,141,Cycle,Base Insertion,32035,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,141,Cycle,Base Deletion,32035,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,142,Cycle,Base Substitution,32368,69.13,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L006,142,Cycle,Base Insertion,31887,0.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,142,Cycle,Base Deletion,31887,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,143,Cycle,Base Substitution,32201,60.49,27.00,26.35,0.65,After
REGRESSION.HCC1395_tumor.L006,143,Cycle,Base Insertion,31714,0.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,143,Cycle,Base Deletion,31714,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,144,Cycle,Base Substitution,32180,60.72,27.00,26.40,0.60,After
REGRESSION.HCC1395_tumor.L006,144,Cycle,Base Insertion,31722,0.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,144,Cycle,Base Deletion,31722,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,145,Cycle,Base Substitution,32033,62.59,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L006,145,Cycle,Base Insertion,31519,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,145,Cycle,Base Deletion,31519,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,146,Cycle,Base Substitution,31836,73.14,26.00,26.13,-0.13,After
REGRESSION.HCC1395_tumor.L006,146,Cycle,Base Insertion,31407,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,146,Cycle,Base Deletion,31407,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,147,Cycle,Base Substitution,31810,76.71,26.00,26.46,-0.46,After
REGRESSION.HCC1395_tumor.L006,148,Cycle,Base Substitution,31646,77.22,26.00,26.29,-0.29,After
REGRESSION.HCC1395_tumor.L006,149,Cycle,Base Substitution,31589,76.16,26.00,26.21,-0.21,After
REGRESSION.HCC1395_tumor.L006,15,Cycle,Base Substitution,38384,47.39,28.00,27.94,0.06,After
REGRESSION.HCC1395_tumor.L006,15,Cycle,Base Insertion,38384,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,15,Cycle,Base Deletion,38384,4.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,150,Cycle,Base Substitution,31494,74.93,26.00,26.43,-0.43,After
REGRESSION.HCC1395_tumor.L006,16,Cycle,Base Substitution,38503,35.71,29.00,28.45,0.55,After
REGRESSION.HCC1395_tumor.L006,16,Cycle,Base Insertion,38503,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,16,Cycle,Base Deletion,38503,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,17,Cycle,Base Substitution,38410,33.91,29.00,28.66,0.34,After
REGRESSION.HCC1395_tumor.L006,17,Cycle,Base Insertion,38410,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,17,Cycle,Base Deletion,38410,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,18,Cycle,Base Substitution,38257,24.37,30.00,28.38,1.62,After
REGRESSION.HCC1395_tumor.L006,18,Cycle,Base Insertion,38257,3.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,18,Cycle,Base Deletion,38257,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,19,Cycle,Base Substitution,38244,31.94,30.00,28.31,1.69,After
REGRESSION.HCC1395_tumor.L006,19,Cycle,Base Insertion,38244,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,19,Cycle,Base Deletion,38244,4.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,2,Cycle,Base Substitution,38500,88.97,27.00,27.47,-0.47,After
REGRESSION.HCC1395_tumor.L006,20,Cycle,Base Substitution,38394,40.16,29.00,28.51,0.49,After
REGRESSION.HCC1395_tumor.L006,20,Cycle,Base Insertion,38394,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,20,Cycle,Base Deletion,38394,4.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,21,Cycle,Base Substitution,38361,34.83,29.00,28.79,0.21,After
REGRESSION.HCC1395_tumor.L006,21,Cycle,Base Insertion,38361,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,21,Cycle,Base Deletion,38361,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,22,Cycle,Base Substitution,38297,25.82,30.00,28.68,1.32,After
REGRESSION.HCC1395_tumor.L006,22,Cycle,Base Insertion,38297,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,22,Cycle,Base Deletion,38297,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,23,Cycle,Base Substitution,38287,15.55,30.00,28.63,1.37,After
REGRESSION.HCC1395_tumor.L006,23,Cycle,Base Insertion,38287,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,23,Cycle,Base Deletion,38287,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,24,Cycle,Base Substitution,38292,21.68,31.00,29.26,1.74,After
REGRESSION.HCC1395_tumor.L006,24,Cycle,Base Insertion,38292,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,24,Cycle,Base Deletion,38292,2.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,25,Cycle,Base Substitution,38301,31.77,30.00,28.63,1.37,After
REGRESSION.HCC1395_tumor.L006,25,Cycle,Base Insertion,38301,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,25,Cycle,Base Deletion,38301,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,26,Cycle,Base Substitution,38351,32.74,30.00,28.07,1.93,After
REGRESSION.HCC1395_tumor.L006,26,Cycle,Base Insertion,38351,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,26,Cycle,Base Deletion,38351,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,27,Cycle,Base Substitution,38251,35.74,29.00,27.68,1.32,After
REGRESSION.HCC1395_tumor.L006,27,Cycle,Base Insertion,38249,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,27,Cycle,Base Deletion,38249,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,28,Cycle,Base Substitution,38357,50.88,29.00,28.35,0.65,After
REGRESSION.HCC1395_tumor.L006,28,Cycle,Base Insertion,38357,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,28,Cycle,Base Deletion,38357,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,29,Cycle,Base Substitution,38214,45.88,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L006,29,Cycle,Base Insertion,38211,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,29,Cycle,Base Deletion,38211,5.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,3,Cycle,Base Substitution,38614,102.72,26.00,27.54,-1.54,After
REGRESSION.HCC1395_tumor.L006,30,Cycle,Base Substitution,38328,39.72,29.00,28.28,0.72,After
REGRESSION.HCC1395_tumor.L006,30,Cycle,Base Insertion,38323,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,30,Cycle,Base Deletion,38323,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,31,Cycle,Base Substitution,38380,39.92,29.00,28.57,0.43,After
REGRESSION.HCC1395_tumor.L006,31,Cycle,Base Insertion,38377,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,31,Cycle,Base Deletion,38377,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,32,Cycle,Base Substitution,38078,55.80,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L006,32,Cycle,Base Insertion,38075,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,32,Cycle,Base Deletion,38075,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,33,Cycle,Base Substitution,38183,33.70,29.00,27.78,1.22,After
REGRESSION.HCC1395_tumor.L006,33,Cycle,Base Insertion,38181,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,33,Cycle,Base Deletion,38181,3.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,34,Cycle,Base Substitution,38198,37.93,29.00,27.63,1.37,After
REGRESSION.HCC1395_tumor.L006,34,Cycle,Base Insertion,38194,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,34,Cycle,Base Deletion,38194,4.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,35,Cycle,Base Substitution,38177,43.89,29.00,27.67,1.33,After
REGRESSION.HCC1395_tumor.L006,35,Cycle,Base Insertion,38173,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,35,Cycle,Base Deletion,38173,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,36,Cycle,Base Substitution,38250,37.92,29.00,27.93,1.07,After
REGRESSION.HCC1395_tumor.L006,36,Cycle,Base Insertion,38246,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,36,Cycle,Base Deletion,38246,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,37,Cycle,Base Substitution,38212,31.18,30.00,28.01,1.99,After
REGRESSION.HCC1395_tumor.L006,37,Cycle,Base Insertion,38208,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,37,Cycle,Base Deletion,38208,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,38,Cycle,Base Substitution,38220,42.78,29.00,28.21,0.79,After
REGRESSION.HCC1395_tumor.L006,38,Cycle,Base Insertion,38217,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,38,Cycle,Base Deletion,38217,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,39,Cycle,Base Substitution,38169,38.80,29.00,28.03,0.97,After
REGRESSION.HCC1395_tumor.L006,39,Cycle,Base Insertion,38168,2.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,39,Cycle,Base Deletion,38168,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,4,Cycle,Base Substitution,38636,83.22,27.00,27.05,-0.05,After
REGRESSION.HCC1395_tumor.L006,40,Cycle,Base Substitution,38084,32.82,30.00,28.14,1.86,After
REGRESSION.HCC1395_tumor.L006,40,Cycle,Base Insertion,38081,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,40,Cycle,Base Deletion,38081,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,41,Cycle,Base Substitution,38238,36.24,29.00,27.70,1.30,After
REGRESSION.HCC1395_tumor.L006,41,Cycle,Base Insertion,38234,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,41,Cycle,Base Deletion,38234,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,42,Cycle,Base Substitution,38018,40.36,29.00,27.72,1.28,After
REGRESSION.HCC1395_tumor.L006,42,Cycle,Base Insertion,38015,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,42,Cycle,Base Deletion,38015,5.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,43,Cycle,Base Substitution,38117,53.25,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L006,43,Cycle,Base Insertion,38115,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,43,Cycle,Base Deletion,38115,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,44,Cycle,Base Substitution,38136,44.18,29.00,27.71,1.29,After
REGRESSION.HCC1395_tumor.L006,44,Cycle,Base Insertion,38136,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,44,Cycle,Base Deletion,38136,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,45,Cycle,Base Substitution,38073,45.54,28.00,27.83,0.17,After
REGRESSION.HCC1395_tumor.L006,45,Cycle,Base Insertion,38069,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,45,Cycle,Base Deletion,38069,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,46,Cycle,Base Substitution,38099,45.62,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L006,46,Cycle,Base Insertion,38092,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,46,Cycle,Base Deletion,38092,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,47,Cycle,Base Substitution,38143,42.42,29.00,27.82,1.18,After
REGRESSION.HCC1395_tumor.L006,47,Cycle,Base Insertion,38134,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,47,Cycle,Base Deletion,38134,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,48,Cycle,Base Substitution,38070,40.99,29.00,27.75,1.25,After
REGRESSION.HCC1395_tumor.L006,48,Cycle,Base Insertion,38060,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,48,Cycle,Base Deletion,38060,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,49,Cycle,Base Substitution,38135,39.76,29.00,27.64,1.36,After
REGRESSION.HCC1395_tumor.L006,49,Cycle,Base Insertion,38128,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,49,Cycle,Base Deletion,38128,4.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,5,Cycle,Base Substitution,38521,40.52,29.00,27.70,1.30,After
REGRESSION.HCC1395_tumor.L006,5,Cycle,Base Insertion,38521,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,5,Cycle,Base Deletion,38521,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,50,Cycle,Base Substitution,38005,31.61,30.00,28.13,1.87,After
REGRESSION.HCC1395_tumor.L006,50,Cycle,Base Insertion,37994,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,50,Cycle,Base Deletion,37994,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,51,Cycle,Base Substitution,38007,65.34,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L006,51,Cycle,Base Insertion,37993,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,51,Cycle,Base Deletion,37993,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,52,Cycle,Base Substitution,38037,43.59,29.00,27.64,1.36,After
REGRESSION.HCC1395_tumor.L006,52,Cycle,Base Insertion,38017,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,52,Cycle,Base Deletion,38017,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,53,Cycle,Base Substitution,38136,44.64,28.00,27.44,0.56,After
REGRESSION.HCC1395_tumor.L006,53,Cycle,Base Insertion,38109,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,53,Cycle,Base Deletion,38109,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,54,Cycle,Base Substitution,37968,41.46,29.00,27.85,1.15,After
REGRESSION.HCC1395_tumor.L006,54,Cycle,Base Insertion,37937,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,54,Cycle,Base Deletion,37937,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,55,Cycle,Base Substitution,38007,37.43,29.00,27.70,1.30,After
REGRESSION.HCC1395_tumor.L006,55,Cycle,Base Insertion,37975,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,55,Cycle,Base Deletion,37975,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,56,Cycle,Base Substitution,38135,63.51,28.00,27.54,0.46,After
REGRESSION.HCC1395_tumor.L006,56,Cycle,Base Insertion,38094,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,56,Cycle,Base Deletion,38094,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,57,Cycle,Base Substitution,37894,54.63,28.00,27.83,0.17,After
REGRESSION.HCC1395_tumor.L006,57,Cycle,Base Insertion,37858,2.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,57,Cycle,Base Deletion,37858,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,58,Cycle,Base Substitution,37918,37.64,29.00,27.81,1.19,After
REGRESSION.HCC1395_tumor.L006,58,Cycle,Base Insertion,37879,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,58,Cycle,Base Deletion,37879,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,59,Cycle,Base Substitution,38019,49.38,28.00,27.71,0.29,After
REGRESSION.HCC1395_tumor.L006,59,Cycle,Base Insertion,37964,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,59,Cycle,Base Deletion,37964,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,6,Cycle,Base Substitution,38631,41.63,29.00,28.09,0.91,After
REGRESSION.HCC1395_tumor.L006,6,Cycle,Base Insertion,38631,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,6,Cycle,Base Deletion,38631,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,60,Cycle,Base Substitution,37845,49.16,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L006,60,Cycle,Base Insertion,37782,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,60,Cycle,Base Deletion,37782,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,61,Cycle,Base Substitution,37925,58.09,28.00,27.85,0.15,After
REGRESSION.HCC1395_tumor.L006,61,Cycle,Base Insertion,37851,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,61,Cycle,Base Deletion,37851,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,62,Cycle,Base Substitution,37922,47.14,29.00,28.17,0.83,After
REGRESSION.HCC1395_tumor.L006,62,Cycle,Base Insertion,37846,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,62,Cycle,Base Deletion,37846,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,63,Cycle,Base Substitution,37848,57.01,28.00,27.30,0.70,After
REGRESSION.HCC1395_tumor.L006,63,Cycle,Base Insertion,37770,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,63,Cycle,Base Deletion,37770,2.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,64,Cycle,Base Substitution,37871,40.44,29.00,27.66,1.34,After
REGRESSION.HCC1395_tumor.L006,64,Cycle,Base Insertion,37788,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,64,Cycle,Base Deletion,37788,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,65,Cycle,Base Substitution,37784,53.31,28.00,27.53,0.47,After
REGRESSION.HCC1395_tumor.L006,65,Cycle,Base Insertion,37710,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,65,Cycle,Base Deletion,37710,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,66,Cycle,Base Substitution,37758,37.30,29.00,28.19,0.81,After
REGRESSION.HCC1395_tumor.L006,66,Cycle,Base Insertion,37666,2.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,66,Cycle,Base Deletion,37666,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,67,Cycle,Base Substitution,37724,62.13,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L006,67,Cycle,Base Insertion,37631,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,67,Cycle,Base Deletion,37631,3.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,68,Cycle,Base Substitution,37723,44.49,28.00,27.37,0.63,After
REGRESSION.HCC1395_tumor.L006,68,Cycle,Base Insertion,37625,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,68,Cycle,Base Deletion,37625,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,69,Cycle,Base Substitution,37852,39.53,29.00,27.44,1.56,After
REGRESSION.HCC1395_tumor.L006,69,Cycle,Base Insertion,37750,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,69,Cycle,Base Deletion,37750,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,7,Cycle,Base Substitution,38397,39.20,29.00,27.57,1.43,After
REGRESSION.HCC1395_tumor.L006,7,Cycle,Base Insertion,38397,0.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,7,Cycle,Base Deletion,38397,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,70,Cycle,Base Substitution,37543,45.38,28.00,27.38,0.62,After
REGRESSION.HCC1395_tumor.L006,70,Cycle,Base Insertion,37438,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,70,Cycle,Base Deletion,37438,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,71,Cycle,Base Substitution,37576,49.36,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L006,71,Cycle,Base Insertion,37453,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,71,Cycle,Base Deletion,37453,3.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,72,Cycle,Base Substitution,37535,40.59,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L006,72,Cycle,Base Insertion,37410,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,72,Cycle,Base Deletion,37410,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,73,Cycle,Base Substitution,37549,54.30,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L006,73,Cycle,Base Insertion,37410,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,73,Cycle,Base Deletion,37410,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,74,Cycle,Base Substitution,37437,46.32,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L006,74,Cycle,Base Insertion,37292,2.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,74,Cycle,Base Deletion,37292,4.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,75,Cycle,Base Substitution,37459,52.60,28.00,27.24,0.76,After
REGRESSION.HCC1395_tumor.L006,75,Cycle,Base Insertion,37314,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,75,Cycle,Base Deletion,37314,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,76,Cycle,Base Substitution,37435,55.16,28.00,27.48,0.52,After
REGRESSION.HCC1395_tumor.L006,76,Cycle,Base Insertion,37280,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,76,Cycle,Base Deletion,37280,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,77,Cycle,Base Substitution,37341,55.97,28.00,27.28,0.72,After
REGRESSION.HCC1395_tumor.L006,77,Cycle,Base Insertion,37188,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,77,Cycle,Base Deletion,37188,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,78,Cycle,Base Substitution,37328,58.81,28.00,27.23,0.77,After
REGRESSION.HCC1395_tumor.L006,78,Cycle,Base Insertion,37155,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,78,Cycle,Base Deletion,37155,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,79,Cycle,Base Substitution,37337,68.07,27.00,27.27,-0.27,After
REGRESSION.HCC1395_tumor.L006,79,Cycle,Base Insertion,37162,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,79,Cycle,Base Deletion,37162,3.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,8,Cycle,Base Substitution,38428,55.80,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L006,8,Cycle,Base Insertion,38428,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,8,Cycle,Base Deletion,38428,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,80,Cycle,Base Substitution,37345,49.09,28.00,27.07,0.93,After
REGRESSION.HCC1395_tumor.L006,80,Cycle,Base Insertion,37153,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,80,Cycle,Base Deletion,37153,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,81,Cycle,Base Substitution,37124,54.09,28.00,27.29,0.71,After
REGRESSION.HCC1395_tumor.L006,81,Cycle,Base Insertion,36919,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,81,Cycle,Base Deletion,36919,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,82,Cycle,Base Substitution,37157,53.60,28.00,27.34,0.66,After
REGRESSION.HCC1395_tumor.L006,82,Cycle,Base Insertion,36947,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,82,Cycle,Base Deletion,36947,2.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,83,Cycle,Base Substitution,37079,51.88,28.00,27.15,0.85,After
REGRESSION.HCC1395_tumor.L006,83,Cycle,Base Insertion,36844,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,83,Cycle,Base Deletion,36844,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,84,Cycle,Base Substitution,37154,60.77,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L006,84,Cycle,Base Insertion,36920,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,84,Cycle,Base Deletion,36920,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,85,Cycle,Base Substitution,36973,66.83,27.00,27.15,-0.15,After
REGRESSION.HCC1395_tumor.L006,85,Cycle,Base Insertion,36749,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,85,Cycle,Base Deletion,36749,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,86,Cycle,Base Substitution,36981,69.01,27.00,27.26,-0.26,After
REGRESSION.HCC1395_tumor.L006,86,Cycle,Base Insertion,36767,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,86,Cycle,Base Deletion,36767,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,87,Cycle,Base Substitution,36897,48.20,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L006,87,Cycle,Base Insertion,36669,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,87,Cycle,Base Deletion,36669,2.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,88,Cycle,Base Substitution,36758,63.27,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L006,88,Cycle,Base Insertion,36519,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,88,Cycle,Base Deletion,36519,3.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,89,Cycle,Base Substitution,36811,66.36,27.00,27.03,-0.03,After
REGRESSION.HCC1395_tumor.L006,89,Cycle,Base Insertion,36565,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,89,Cycle,Base Deletion,36565,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,9,Cycle,Base Substitution,38496,52.47,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L006,9,Cycle,Base Insertion,38496,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,9,Cycle,Base Deletion,38496,2.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,90,Cycle,Base Substitution,36803,61.49,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L006,90,Cycle,Base Insertion,36553,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,90,Cycle,Base Deletion,36553,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,91,Cycle,Base Substitution,36795,65.74,27.00,27.07,-0.07,After
REGRESSION.HCC1395_tumor.L006,91,Cycle,Base Insertion,36542,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,91,Cycle,Base Deletion,36542,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,92,Cycle,Base Substitution,36536,63.96,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L006,92,Cycle,Base Insertion,36254,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,92,Cycle,Base Deletion,36254,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,93,Cycle,Base Substitution,36352,64.56,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L006,93,Cycle,Base Insertion,36073,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,93,Cycle,Base Deletion,36073,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,94,Cycle,Base Substitution,36469,71.13,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L006,94,Cycle,Base Insertion,36181,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,94,Cycle,Base Deletion,36181,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,95,Cycle,Base Substitution,36273,50.77,28.00,27.20,0.80,After
REGRESSION.HCC1395_tumor.L006,95,Cycle,Base Insertion,35961,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,95,Cycle,Base Deletion,35961,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,96,Cycle,Base Substitution,36231,58.18,28.00,27.07,0.93,After
REGRESSION.HCC1395_tumor.L006,96,Cycle,Base Insertion,35927,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,96,Cycle,Base Deletion,35927,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,97,Cycle,Base Substitution,36235,56.12,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L006,97,Cycle,Base Insertion,35936,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,97,Cycle,Base Deletion,35936,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,98,Cycle,Base Substitution,36128,66.13,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L006,98,Cycle,Base Insertion,35835,1.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,98,Cycle,Base Deletion,35835,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,99,Cycle,Base Substitution,36054,62.34,28.00,27.08,0.92,After
REGRESSION.HCC1395_tumor.L006,99,Cycle,Base Insertion,35765,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,99,Cycle,Base Deletion,35765,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L006,10,QualityScore,Base Substitution,14608,1588.82,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L006,11,QualityScore,Base Substitution,14300,1017.54,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L006,12,QualityScore,Base Substitution,21797,1264.48,12.00,12.00,0.00,After
REGRESSION.HCC1395_tumor.L006,13,QualityScore,Base Substitution,13125,248.15,16.00,13.00,3.00,After
REGRESSION.HCC1395_tumor.L006,14,QualityScore,Base Substitution,10582,159.70,17.00,14.00,3.00,After
REGRESSION.HCC1395_tumor.L006,15,QualityScore,Base Substitution,19019,8.48,22.00,15.00,7.00,After
REGRESSION.HCC1395_tumor.L006,16,QualityScore,Base Substitution,5871,0.29,20.00,16.00,4.00,After
REGRESSION.HCC1395_tumor.L006,17,QualityScore,Base Substitution,14223,2.64,22.00,17.00,5.00,After
REGRESSION.HCC1395_tumor.L006,22,QualityScore,Base Substitution,10163,5.83,24.00,22.00,2.00,After
REGRESSION.HCC1395_tumor.L006,23,QualityScore,Base Substitution,36513,225.36,22.00,23.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,24,QualityScore,Base Substitution,129402,638.95,23.00,24.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,25,QualityScore,Base Substitution,63242,209.57,25.00,25.00,0.00,After
REGRESSION.HCC1395_tumor.L006,26,QualityScore,Base Substitution,101856,150.81,28.00,26.00,2.00,After
REGRESSION.HCC1395_tumor.L006,28,QualityScore,Base Substitution,10048,0.89,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L006,29,QualityScore,Base Substitution,70172,134.88,28.00,29.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,30,QualityScore,Base Substitution,3161494,1873.68,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L006,31,QualityScore,Base Substitution,2181337,824.22,34.00,31.00,3.00,After
REGRESSION.HCC1395_tumor.L006,32,QualityScore,Base Substitution,4530810,1056.51,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L006,33,QualityScore,Base Substitution,430111,62.65,36.00,33.00,3.00,After
REGRESSION.HCC1395_tumor.L006,45,QualityScore,Base Insertion,10904356,489.19,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L006,45,QualityScore,Base Deletion,10904356,977.80,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L006,8,QualityScore,Base Substitution,1614,282.57,8.00,8.00,0.00,After
REGRESSION.HCC1395_tumor.L006,9,QualityScore,Base Substitution,64069,8553.21,9.00,9.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AA,Context,Base Substitution,825444,1789.05,27.00,25.59,1.41,After
REGRESSION.HCC1395_tumor.L007,AAA,Context,Base Insertion,292857,57.64,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L007,AAA,Context,Base Deletion,292857,188.46,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L007,AAC,Context,Base Insertion,131145,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AAC,Context,Base Deletion,131145,8.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AAG,Context,Base Insertion,195507,4.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AAG,Context,Base Deletion,195507,9.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AAT,Context,Base Insertion,172172,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AAT,Context,Base Deletion,172172,15.66,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,AC,Context,Base Substitution,528153,1863.82,25.00,24.70,0.30,After
REGRESSION.HCC1395_tumor.L007,ACA,Context,Base Insertion,203172,17.81,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,ACA,Context,Base Deletion,203172,36.16,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L007,ACC,Context,Base Insertion,145992,7.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ACC,Context,Base Deletion,145992,4.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ACG,Context,Base Insertion,30606,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ACG,Context,Base Deletion,30606,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ACT,Context,Base Insertion,157301,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ACT,Context,Base Deletion,157301,12.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AG,Context,Base Substitution,792395,640.00,31.00,28.76,2.24,After
REGRESSION.HCC1395_tumor.L007,AGA,Context,Base Insertion,219838,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AGA,Context,Base Deletion,219838,10.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AGC,Context,Base Insertion,190468,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AGC,Context,Base Deletion,190468,9.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AGG,Context,Base Insertion,225722,9.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AGG,Context,Base Deletion,225722,7.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AGT,Context,Base Insertion,152816,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AGT,Context,Base Deletion,152816,4.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,AT,Context,Base Substitution,597436,599.75,30.00,27.61,2.39,After
REGRESSION.HCC1395_tumor.L007,ATA,Context,Base Insertion,133244,6.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ATA,Context,Base Deletion,133244,6.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ATC,Context,Base Insertion,119996,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ATC,Context,Base Deletion,119996,9.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ATG,Context,Base Insertion,173260,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ATG,Context,Base Deletion,173260,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ATT,Context,Base Insertion,181883,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,ATT,Context,Base Deletion,181883,8.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CA,Context,Base Substitution,850025,1802.06,27.00,25.76,1.24,After
REGRESSION.HCC1395_tumor.L007,CAA,Context,Base Insertion,169671,5.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CAA,Context,Base Deletion,169671,11.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CAC,Context,Base Insertion,182277,20.92,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,CAC,Context,Base Deletion,182277,33.92,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L007,CAG,Context,Base Insertion,289988,5.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CAG,Context,Base Deletion,289988,11.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CAT,Context,Base Insertion,169466,7.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CAT,Context,Base Deletion,169466,4.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CC,Context,Base Substitution,759900,2360.85,25.00,24.67,0.33,After
REGRESSION.HCC1395_tumor.L007,CCA,Context,Base Insertion,243063,5.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CCA,Context,Base Deletion,243063,7.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CCC,Context,Base Insertion,210183,10.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CCC,Context,Base Deletion,210183,18.51,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,CCG,Context,Base Insertion,53913,3.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CCG,Context,Base Deletion,53913,6.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CCT,Context,Base Insertion,242020,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CCT,Context,Base Deletion,242020,9.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CG,Context,Base Substitution,160702,521.27,25.00,24.96,0.04,After
REGRESSION.HCC1395_tumor.L007,CGA,Context,Base Insertion,56137,0.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CGA,Context,Base Deletion,56137,0.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CGC,Context,Base Insertion,80706,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CGC,Context,Base Deletion,80706,9.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CGG,Context,Base Insertion,98187,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CGG,Context,Base Deletion,98187,8.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CGT,Context,Base Insertion,62497,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CGT,Context,Base Deletion,62497,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CT,Context,Base Substitution,834813,363.24,33.00,29.69,3.31,After
REGRESSION.HCC1395_tumor.L007,CTA,Context,Base Insertion,95740,0.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CTA,Context,Base Deletion,95740,6.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CTC,Context,Base Insertion,201695,6.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CTC,Context,Base Deletion,201695,21.22,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,CTG,Context,Base Insertion,290977,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CTG,Context,Base Deletion,290977,14.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CTT,Context,Base Insertion,208291,8.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,CTT,Context,Base Deletion,208291,10.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GA,Context,Base Substitution,697788,1027.28,28.00,26.56,1.44,After
REGRESSION.HCC1395_tumor.L007,GAA,Context,Base Insertion,207369,4.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GAA,Context,Base Deletion,207369,8.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GAC,Context,Base Insertion,117953,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GAC,Context,Base Deletion,117953,5.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GAG,Context,Base Insertion,205092,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GAG,Context,Base Deletion,205092,10.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GAT,Context,Base Insertion,124787,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GAT,Context,Base Deletion,124787,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GC,Context,Base Substitution,658492,1468.72,26.00,25.99,0.01,After
REGRESSION.HCC1395_tumor.L007,GCA,Context,Base Insertion,202749,5.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GCA,Context,Base Deletion,202749,4.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GCC,Context,Base Insertion,197893,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GCC,Context,Base Deletion,197893,12.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GCG,Context,Base Insertion,49184,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GCG,Context,Base Deletion,49184,7.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GCT,Context,Base Insertion,208536,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GCT,Context,Base Deletion,208536,5.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GG,Context,Base Substitution,785979,756.42,30.00,27.73,2.27,After
REGRESSION.HCC1395_tumor.L007,GGA,Context,Base Insertion,213211,18.35,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,GGA,Context,Base Deletion,213211,16.15,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,GGC,Context,Base Insertion,194842,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GGC,Context,Base Deletion,194842,6.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GGG,Context,Base Insertion,217429,14.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GGG,Context,Base Deletion,217429,29.96,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,GGT,Context,Base Insertion,157790,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GGT,Context,Base Deletion,157790,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GT,Context,Base Substitution,585646,965.45,28.00,26.94,1.06,After
REGRESSION.HCC1395_tumor.L007,GTA,Context,Base Insertion,100750,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GTA,Context,Base Deletion,100750,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GTC,Context,Base Insertion,125799,2.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GTC,Context,Base Deletion,125799,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GTG,Context,Base Insertion,198837,16.76,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,GTG,Context,Base Deletion,198837,31.08,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,GTT,Context,Base Insertion,147811,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,GTT,Context,Base Deletion,147811,11.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TA,Context,Base Substitution,479827,1195.75,26.00,25.01,0.99,After
REGRESSION.HCC1395_tumor.L007,TAA,Context,Base Insertion,148628,11.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TAA,Context,Base Deletion,148628,13.76,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,TAC,Context,Base Insertion,93356,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TAC,Context,Base Deletion,93356,5.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TAG,Context,Base Insertion,95873,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TAG,Context,Base Deletion,95873,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TAT,Context,Base Insertion,126635,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TAT,Context,Base Deletion,126635,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TC,Context,Base Substitution,644321,1631.86,26.00,26.15,-0.15,After
REGRESSION.HCC1395_tumor.L007,TCA,Context,Base Insertion,194467,6.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TCA,Context,Base Deletion,194467,14.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TCC,Context,Base Insertion,200791,25.86,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,TCC,Context,Base Deletion,200791,8.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TCG,Context,Base Insertion,25833,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TCG,Context,Base Deletion,25833,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TCT,Context,Base Insertion,221313,5.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TCT,Context,Base Deletion,221313,18.90,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,TG,Context,Base Substitution,838105,356.69,33.00,29.45,3.55,After
REGRESSION.HCC1395_tumor.L007,TGA,Context,Base Insertion,203238,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TGA,Context,Base Deletion,203238,4.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TGC,Context,Base Insertion,188339,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TGC,Context,Base Deletion,188339,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TGG,Context,Base Insertion,238758,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TGG,Context,Base Deletion,238758,6.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TGT,Context,Base Insertion,208636,16.63,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,TGT,Context,Base Deletion,208636,33.28,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,TT,Context,Base Substitution,836539,904.76,30.00,28.31,1.69,After
REGRESSION.HCC1395_tumor.L007,TTA,Context,Base Insertion,146516,8.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TTA,Context,Base Deletion,146516,7.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TTC,Context,Base Insertion,193011,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TTC,Context,Base Deletion,193011,10.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TTG,Context,Base Insertion,169082,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TTG,Context,Base Deletion,169082,8.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,TTT,Context,Base Insertion,292954,40.61,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L007,TTT,Context,Base Deletion,292954,175.84,38.00,45.00,-7.00,After
REGRESSION.HCC1395_tumor.L007,-1,Cycle,Base Substitution,38294,165.34,24.00,23.53,0.47,After
REGRESSION.HCC1395_tumor.L007,-10,Cycle,Base Substitution,38670,54.49,28.00,27.27,0.73,After
REGRESSION.HCC1395_tumor.L007,-10,Cycle,Base Insertion,38669,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-10,Cycle,Base Deletion,38669,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-100,Cycle,Base Substitution,36175,74.05,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L007,-100,Cycle,Base Insertion,35874,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-100,Cycle,Base Deletion,35874,4.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-101,Cycle,Base Substitution,36010,79.61,26.00,26.38,-0.38,After
REGRESSION.HCC1395_tumor.L007,-101,Cycle,Base Insertion,35705,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-101,Cycle,Base Deletion,35705,4.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-102,Cycle,Base Substitution,36062,64.52,27.00,26.50,0.50,After
REGRESSION.HCC1395_tumor.L007,-102,Cycle,Base Insertion,35744,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-102,Cycle,Base Deletion,35744,4.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-103,Cycle,Base Substitution,35923,69.60,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L007,-103,Cycle,Base Insertion,35628,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-103,Cycle,Base Deletion,35628,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-104,Cycle,Base Substitution,35980,71.89,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L007,-104,Cycle,Base Insertion,35643,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-104,Cycle,Base Deletion,35643,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-105,Cycle,Base Substitution,35745,80.29,26.00,26.40,-0.40,After
REGRESSION.HCC1395_tumor.L007,-105,Cycle,Base Insertion,35398,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-105,Cycle,Base Deletion,35398,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-106,Cycle,Base Substitution,35697,71.47,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L007,-106,Cycle,Base Insertion,35331,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-106,Cycle,Base Deletion,35331,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-107,Cycle,Base Substitution,35636,66.85,27.00,26.34,0.66,After
REGRESSION.HCC1395_tumor.L007,-107,Cycle,Base Insertion,35267,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-107,Cycle,Base Deletion,35267,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-108,Cycle,Base Substitution,35578,68.42,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L007,-108,Cycle,Base Insertion,35232,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-108,Cycle,Base Deletion,35232,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-109,Cycle,Base Substitution,35430,91.09,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L007,-109,Cycle,Base Insertion,35080,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-109,Cycle,Base Deletion,35080,2.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-11,Cycle,Base Substitution,38509,53.59,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L007,-11,Cycle,Base Insertion,38508,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-11,Cycle,Base Deletion,38508,2.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-110,Cycle,Base Substitution,35339,63.71,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L007,-110,Cycle,Base Insertion,35008,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-110,Cycle,Base Deletion,35008,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-111,Cycle,Base Substitution,35175,61.91,27.00,26.36,0.64,After
REGRESSION.HCC1395_tumor.L007,-111,Cycle,Base Insertion,34852,2.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-111,Cycle,Base Deletion,34852,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-112,Cycle,Base Substitution,35232,90.42,26.00,26.15,-0.15,After
REGRESSION.HCC1395_tumor.L007,-112,Cycle,Base Insertion,34895,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-112,Cycle,Base Deletion,34895,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-113,Cycle,Base Substitution,35093,92.55,26.00,26.33,-0.33,After
REGRESSION.HCC1395_tumor.L007,-113,Cycle,Base Insertion,34751,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-113,Cycle,Base Deletion,34751,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-114,Cycle,Base Substitution,35012,93.02,26.00,26.46,-0.46,After
REGRESSION.HCC1395_tumor.L007,-114,Cycle,Base Insertion,34657,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-114,Cycle,Base Deletion,34657,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-115,Cycle,Base Substitution,34889,87.03,26.00,25.61,0.39,After
REGRESSION.HCC1395_tumor.L007,-115,Cycle,Base Insertion,34511,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-115,Cycle,Base Deletion,34511,2.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-116,Cycle,Base Substitution,34752,80.73,26.00,26.46,-0.46,After
REGRESSION.HCC1395_tumor.L007,-116,Cycle,Base Insertion,34367,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-116,Cycle,Base Deletion,34367,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-117,Cycle,Base Substitution,34601,79.28,26.00,26.39,-0.39,After
REGRESSION.HCC1395_tumor.L007,-117,Cycle,Base Insertion,34234,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-117,Cycle,Base Deletion,34234,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-118,Cycle,Base Substitution,34601,83.73,26.00,26.23,-0.23,After
REGRESSION.HCC1395_tumor.L007,-118,Cycle,Base Insertion,34222,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-118,Cycle,Base Deletion,34222,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-119,Cycle,Base Substitution,34460,103.46,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L007,-119,Cycle,Base Insertion,34107,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-119,Cycle,Base Deletion,34107,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-12,Cycle,Base Substitution,38672,56.41,28.00,27.91,0.09,After
REGRESSION.HCC1395_tumor.L007,-12,Cycle,Base Insertion,38671,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-12,Cycle,Base Deletion,38671,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-120,Cycle,Base Substitution,34337,94.72,26.00,25.66,0.34,After
REGRESSION.HCC1395_tumor.L007,-120,Cycle,Base Insertion,33973,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-120,Cycle,Base Deletion,33973,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-121,Cycle,Base Substitution,34114,88.15,26.00,26.22,-0.22,After
REGRESSION.HCC1395_tumor.L007,-121,Cycle,Base Insertion,33745,0.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-121,Cycle,Base Deletion,33745,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-122,Cycle,Base Substitution,34254,66.78,27.00,26.29,0.71,After
REGRESSION.HCC1395_tumor.L007,-122,Cycle,Base Insertion,33884,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-122,Cycle,Base Deletion,33884,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-123,Cycle,Base Substitution,34230,69.77,27.00,26.32,0.68,After
REGRESSION.HCC1395_tumor.L007,-123,Cycle,Base Insertion,33839,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-123,Cycle,Base Deletion,33839,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-124,Cycle,Base Substitution,34084,72.83,27.00,26.14,0.86,After
REGRESSION.HCC1395_tumor.L007,-124,Cycle,Base Insertion,33694,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-124,Cycle,Base Deletion,33694,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-125,Cycle,Base Substitution,33943,69.53,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L007,-125,Cycle,Base Insertion,33565,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-125,Cycle,Base Deletion,33565,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-126,Cycle,Base Substitution,33866,74.07,27.00,26.97,0.03,After
REGRESSION.HCC1395_tumor.L007,-126,Cycle,Base Insertion,33494,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-126,Cycle,Base Deletion,33494,2.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-127,Cycle,Base Substitution,33729,71.75,27.00,26.27,0.73,After
REGRESSION.HCC1395_tumor.L007,-127,Cycle,Base Insertion,33343,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-127,Cycle,Base Deletion,33343,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-128,Cycle,Base Substitution,33740,81.84,26.00,26.16,-0.16,After
REGRESSION.HCC1395_tumor.L007,-128,Cycle,Base Insertion,33353,3.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-128,Cycle,Base Deletion,33353,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-129,Cycle,Base Substitution,33572,66.28,27.00,26.24,0.76,After
REGRESSION.HCC1395_tumor.L007,-129,Cycle,Base Insertion,33172,1.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-129,Cycle,Base Deletion,33172,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-13,Cycle,Base Substitution,38472,52.59,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L007,-13,Cycle,Base Insertion,38471,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-13,Cycle,Base Deletion,38471,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-130,Cycle,Base Substitution,33513,99.33,26.00,26.04,-0.04,After
REGRESSION.HCC1395_tumor.L007,-130,Cycle,Base Insertion,33102,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-130,Cycle,Base Deletion,33102,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-131,Cycle,Base Substitution,33534,86.91,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L007,-131,Cycle,Base Insertion,33110,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-131,Cycle,Base Deletion,33110,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-132,Cycle,Base Substitution,33285,73.50,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L007,-132,Cycle,Base Insertion,32853,0.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-132,Cycle,Base Deletion,32853,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-133,Cycle,Base Substitution,33275,72.74,26.00,25.98,0.02,After
REGRESSION.HCC1395_tumor.L007,-133,Cycle,Base Insertion,32858,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-133,Cycle,Base Deletion,32858,2.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-134,Cycle,Base Substitution,33173,76.42,26.00,26.12,-0.12,After
REGRESSION.HCC1395_tumor.L007,-134,Cycle,Base Insertion,32730,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-134,Cycle,Base Deletion,32730,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-135,Cycle,Base Substitution,33031,79.13,26.00,26.17,-0.17,After
REGRESSION.HCC1395_tumor.L007,-135,Cycle,Base Insertion,32606,0.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-135,Cycle,Base Deletion,32606,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-136,Cycle,Base Substitution,32906,72.79,26.00,26.17,-0.17,After
REGRESSION.HCC1395_tumor.L007,-136,Cycle,Base Insertion,32466,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-136,Cycle,Base Deletion,32466,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-137,Cycle,Base Substitution,32825,74.90,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L007,-137,Cycle,Base Insertion,32373,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-137,Cycle,Base Deletion,32373,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-138,Cycle,Base Substitution,32738,72.74,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L007,-138,Cycle,Base Insertion,32296,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-138,Cycle,Base Deletion,32296,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-139,Cycle,Base Substitution,32523,62.40,27.00,26.26,0.74,After
REGRESSION.HCC1395_tumor.L007,-139,Cycle,Base Insertion,32053,0.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-139,Cycle,Base Deletion,32053,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-14,Cycle,Base Substitution,38560,74.36,27.00,27.05,-0.05,After
REGRESSION.HCC1395_tumor.L007,-14,Cycle,Base Insertion,38560,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-14,Cycle,Base Deletion,38560,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-140,Cycle,Base Substitution,32507,70.40,27.00,26.25,0.75,After
REGRESSION.HCC1395_tumor.L007,-140,Cycle,Base Insertion,32025,0.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-140,Cycle,Base Deletion,32025,0.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-141,Cycle,Base Substitution,32452,54.36,27.00,26.25,0.75,After
REGRESSION.HCC1395_tumor.L007,-141,Cycle,Base Insertion,31956,0.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-141,Cycle,Base Deletion,31956,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-142,Cycle,Base Substitution,32215,67.43,27.00,26.25,0.75,After
REGRESSION.HCC1395_tumor.L007,-142,Cycle,Base Insertion,31657,0.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-142,Cycle,Base Deletion,31657,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-143,Cycle,Base Substitution,32134,43.75,28.00,26.22,1.78,After
REGRESSION.HCC1395_tumor.L007,-143,Cycle,Base Insertion,31531,0.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-143,Cycle,Base Deletion,31531,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-144,Cycle,Base Substitution,32070,37.39,28.00,26.78,1.22,After
REGRESSION.HCC1395_tumor.L007,-144,Cycle,Base Insertion,31396,0.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-144,Cycle,Base Deletion,31396,0.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-145,Cycle,Base Substitution,31939,48.10,27.00,26.31,0.69,After
REGRESSION.HCC1395_tumor.L007,-145,Cycle,Base Insertion,24753,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-145,Cycle,Base Deletion,24753,0.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-146,Cycle,Base Substitution,31633,21.95,28.00,26.31,1.69,After
REGRESSION.HCC1395_tumor.L007,-146,Cycle,Base Insertion,24572,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-146,Cycle,Base Deletion,24572,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-147,Cycle,Base Substitution,31611,18.80,27.00,23.03,3.97,After
REGRESSION.HCC1395_tumor.L007,-148,Cycle,Base Substitution,31365,25.15,24.00,16.11,7.89,After
REGRESSION.HCC1395_tumor.L007,-149,Cycle,Base Substitution,19496,29.11,21.00,14.19,6.81,After
REGRESSION.HCC1395_tumor.L007,-15,Cycle,Base Substitution,38593,56.71,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L007,-15,Cycle,Base Insertion,38593,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-15,Cycle,Base Deletion,38593,2.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-150,Cycle,Base Substitution,6861,8.85,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L007,-16,Cycle,Base Substitution,38670,56.96,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L007,-16,Cycle,Base Insertion,38670,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-16,Cycle,Base Deletion,38670,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-17,Cycle,Base Substitution,38570,65.54,28.00,27.72,0.28,After
REGRESSION.HCC1395_tumor.L007,-17,Cycle,Base Insertion,38570,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-17,Cycle,Base Deletion,38570,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-18,Cycle,Base Substitution,38591,57.99,28.00,27.68,0.32,After
REGRESSION.HCC1395_tumor.L007,-18,Cycle,Base Insertion,38591,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-18,Cycle,Base Deletion,38591,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-19,Cycle,Base Substitution,38652,53.49,28.00,27.16,0.84,After
REGRESSION.HCC1395_tumor.L007,-19,Cycle,Base Insertion,38652,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-19,Cycle,Base Deletion,38652,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-2,Cycle,Base Substitution,38576,115.92,25.00,25.78,-0.78,After
REGRESSION.HCC1395_tumor.L007,-20,Cycle,Base Substitution,38600,54.12,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L007,-20,Cycle,Base Insertion,38600,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-20,Cycle,Base Deletion,38600,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-21,Cycle,Base Substitution,38490,47.13,28.00,27.79,0.21,After
REGRESSION.HCC1395_tumor.L007,-21,Cycle,Base Insertion,38489,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-21,Cycle,Base Deletion,38489,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-22,Cycle,Base Substitution,38516,45.71,28.00,27.72,0.28,After
REGRESSION.HCC1395_tumor.L007,-22,Cycle,Base Insertion,38515,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-22,Cycle,Base Deletion,38515,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-23,Cycle,Base Substitution,38610,52.87,28.00,27.73,0.27,After
REGRESSION.HCC1395_tumor.L007,-23,Cycle,Base Insertion,38609,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-23,Cycle,Base Deletion,38609,3.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-24,Cycle,Base Substitution,38458,54.82,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L007,-24,Cycle,Base Insertion,38458,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-24,Cycle,Base Deletion,38458,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-25,Cycle,Base Substitution,38488,62.07,28.00,27.48,0.52,After
REGRESSION.HCC1395_tumor.L007,-25,Cycle,Base Insertion,38488,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-25,Cycle,Base Deletion,38488,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-26,Cycle,Base Substitution,38411,56.14,28.00,26.57,1.43,After
REGRESSION.HCC1395_tumor.L007,-26,Cycle,Base Insertion,38411,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-26,Cycle,Base Deletion,38411,2.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-27,Cycle,Base Substitution,38441,49.25,28.00,26.58,1.42,After
REGRESSION.HCC1395_tumor.L007,-27,Cycle,Base Insertion,38439,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-27,Cycle,Base Deletion,38439,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-28,Cycle,Base Substitution,38353,69.44,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L007,-28,Cycle,Base Insertion,38349,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-28,Cycle,Base Deletion,38349,3.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-29,Cycle,Base Substitution,38583,50.49,28.00,26.56,1.44,After
REGRESSION.HCC1395_tumor.L007,-29,Cycle,Base Insertion,38579,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-29,Cycle,Base Deletion,38579,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-3,Cycle,Base Substitution,38759,127.32,25.00,26.38,-1.38,After
REGRESSION.HCC1395_tumor.L007,-30,Cycle,Base Substitution,38437,54.49,28.00,26.63,1.37,After
REGRESSION.HCC1395_tumor.L007,-30,Cycle,Base Insertion,38430,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-30,Cycle,Base Deletion,38430,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-31,Cycle,Base Substitution,38346,76.33,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L007,-31,Cycle,Base Insertion,38339,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-31,Cycle,Base Deletion,38339,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-32,Cycle,Base Substitution,38431,40.20,28.00,26.77,1.23,After
REGRESSION.HCC1395_tumor.L007,-32,Cycle,Base Insertion,38426,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-32,Cycle,Base Deletion,38426,4.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-33,Cycle,Base Substitution,38437,69.06,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L007,-33,Cycle,Base Insertion,38432,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-33,Cycle,Base Deletion,38432,4.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-34,Cycle,Base Substitution,38359,42.35,28.00,26.69,1.31,After
REGRESSION.HCC1395_tumor.L007,-34,Cycle,Base Insertion,38356,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-34,Cycle,Base Deletion,38356,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-35,Cycle,Base Substitution,38438,61.53,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L007,-35,Cycle,Base Insertion,38436,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-35,Cycle,Base Deletion,38436,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-36,Cycle,Base Substitution,38498,51.68,28.00,26.54,1.46,After
REGRESSION.HCC1395_tumor.L007,-36,Cycle,Base Insertion,38494,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-36,Cycle,Base Deletion,38494,4.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-37,Cycle,Base Substitution,38368,55.34,28.00,27.05,0.95,After
REGRESSION.HCC1395_tumor.L007,-37,Cycle,Base Insertion,38364,3.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-37,Cycle,Base Deletion,38364,5.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-38,Cycle,Base Substitution,38271,64.15,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L007,-38,Cycle,Base Insertion,38265,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-38,Cycle,Base Deletion,38265,5.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-39,Cycle,Base Substitution,38349,55.90,28.00,26.76,1.24,After
REGRESSION.HCC1395_tumor.L007,-39,Cycle,Base Insertion,38344,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-39,Cycle,Base Deletion,38344,4.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-4,Cycle,Base Substitution,38657,99.06,26.00,26.12,-0.12,After
REGRESSION.HCC1395_tumor.L007,-40,Cycle,Base Substitution,38284,44.03,29.00,27.12,1.88,After
REGRESSION.HCC1395_tumor.L007,-40,Cycle,Base Insertion,38280,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-40,Cycle,Base Deletion,38280,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-41,Cycle,Base Substitution,38388,42.65,29.00,27.17,1.83,After
REGRESSION.HCC1395_tumor.L007,-41,Cycle,Base Insertion,38382,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-41,Cycle,Base Deletion,38382,5.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-42,Cycle,Base Substitution,38439,47.27,28.00,26.71,1.29,After
REGRESSION.HCC1395_tumor.L007,-42,Cycle,Base Insertion,38431,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-42,Cycle,Base Deletion,38431,3.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-43,Cycle,Base Substitution,38294,67.83,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L007,-43,Cycle,Base Insertion,38283,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-43,Cycle,Base Deletion,38283,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-44,Cycle,Base Substitution,38427,46.12,28.00,26.82,1.18,After
REGRESSION.HCC1395_tumor.L007,-44,Cycle,Base Insertion,38421,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-44,Cycle,Base Deletion,38421,4.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-45,Cycle,Base Substitution,38343,56.97,28.00,26.62,1.38,After
REGRESSION.HCC1395_tumor.L007,-45,Cycle,Base Insertion,38333,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-45,Cycle,Base Deletion,38333,4.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-46,Cycle,Base Substitution,38328,51.10,28.00,26.55,1.45,After
REGRESSION.HCC1395_tumor.L007,-46,Cycle,Base Insertion,38320,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-46,Cycle,Base Deletion,38320,3.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-47,Cycle,Base Substitution,38312,59.03,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L007,-47,Cycle,Base Insertion,38300,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-47,Cycle,Base Deletion,38300,4.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-48,Cycle,Base Substitution,38319,64.70,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L007,-48,Cycle,Base Insertion,38305,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-48,Cycle,Base Deletion,38305,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-49,Cycle,Base Substitution,38177,49.59,28.00,26.94,1.06,After
REGRESSION.HCC1395_tumor.L007,-49,Cycle,Base Insertion,38164,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-49,Cycle,Base Deletion,38164,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-5,Cycle,Base Substitution,38765,56.38,28.00,26.91,1.09,After
REGRESSION.HCC1395_tumor.L007,-5,Cycle,Base Insertion,38764,0.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-5,Cycle,Base Deletion,38764,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-50,Cycle,Base Substitution,38254,59.25,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L007,-50,Cycle,Base Insertion,38232,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-50,Cycle,Base Deletion,38232,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-51,Cycle,Base Substitution,38230,56.55,28.00,26.73,1.27,After
REGRESSION.HCC1395_tumor.L007,-51,Cycle,Base Insertion,38202,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-51,Cycle,Base Deletion,38202,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-52,Cycle,Base Substitution,38077,56.45,28.00,26.70,1.30,After
REGRESSION.HCC1395_tumor.L007,-52,Cycle,Base Insertion,38046,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-52,Cycle,Base Deletion,38046,4.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-53,Cycle,Base Substitution,38132,65.39,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L007,-53,Cycle,Base Insertion,38101,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-53,Cycle,Base Deletion,38101,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-54,Cycle,Base Substitution,38210,69.27,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L007,-54,Cycle,Base Insertion,38174,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-54,Cycle,Base Deletion,38174,4.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-55,Cycle,Base Substitution,38270,56.74,28.00,26.80,1.20,After
REGRESSION.HCC1395_tumor.L007,-55,Cycle,Base Insertion,38225,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-55,Cycle,Base Deletion,38225,4.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-56,Cycle,Base Substitution,38255,63.23,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L007,-56,Cycle,Base Insertion,38215,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-56,Cycle,Base Deletion,38215,4.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-57,Cycle,Base Substitution,38080,59.43,28.00,27.08,0.92,After
REGRESSION.HCC1395_tumor.L007,-57,Cycle,Base Insertion,38018,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-57,Cycle,Base Deletion,38018,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-58,Cycle,Base Substitution,38064,67.07,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L007,-58,Cycle,Base Insertion,38009,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-58,Cycle,Base Deletion,38009,5.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-59,Cycle,Base Substitution,38144,67.28,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L007,-59,Cycle,Base Insertion,38091,4.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-59,Cycle,Base Deletion,38091,4.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-6,Cycle,Base Substitution,38659,62.56,27.00,27.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-6,Cycle,Base Insertion,38658,0.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-6,Cycle,Base Deletion,38658,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-60,Cycle,Base Substitution,38062,79.85,27.00,26.73,0.27,After
REGRESSION.HCC1395_tumor.L007,-60,Cycle,Base Insertion,37993,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-60,Cycle,Base Deletion,37993,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-61,Cycle,Base Substitution,37957,52.52,28.00,26.95,1.05,After
REGRESSION.HCC1395_tumor.L007,-61,Cycle,Base Insertion,37902,2.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-61,Cycle,Base Deletion,37902,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-62,Cycle,Base Substitution,37983,58.78,27.00,26.98,0.02,After
REGRESSION.HCC1395_tumor.L007,-62,Cycle,Base Insertion,37923,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-62,Cycle,Base Deletion,37923,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-63,Cycle,Base Substitution,37902,49.85,28.00,26.82,1.18,After
REGRESSION.HCC1395_tumor.L007,-63,Cycle,Base Insertion,37842,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-63,Cycle,Base Deletion,37842,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-64,Cycle,Base Substitution,37880,60.80,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L007,-64,Cycle,Base Insertion,37814,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-64,Cycle,Base Deletion,37814,4.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-65,Cycle,Base Substitution,37855,65.85,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L007,-65,Cycle,Base Insertion,37765,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-65,Cycle,Base Deletion,37765,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-66,Cycle,Base Substitution,37980,60.87,27.00,26.95,0.05,After
REGRESSION.HCC1395_tumor.L007,-66,Cycle,Base Insertion,37887,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-66,Cycle,Base Deletion,37887,3.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-67,Cycle,Base Substitution,38002,69.22,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L007,-67,Cycle,Base Insertion,37903,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-67,Cycle,Base Deletion,37903,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-68,Cycle,Base Substitution,37930,61.75,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L007,-68,Cycle,Base Insertion,37824,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-68,Cycle,Base Deletion,37824,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-69,Cycle,Base Substitution,37871,70.07,27.00,27.14,-0.14,After
REGRESSION.HCC1395_tumor.L007,-69,Cycle,Base Insertion,37768,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-69,Cycle,Base Deletion,37768,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-7,Cycle,Base Substitution,38563,71.63,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L007,-7,Cycle,Base Insertion,38563,0.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-7,Cycle,Base Deletion,38563,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-70,Cycle,Base Substitution,37761,52.91,28.00,26.66,1.34,After
REGRESSION.HCC1395_tumor.L007,-70,Cycle,Base Insertion,37648,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-70,Cycle,Base Deletion,37648,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-71,Cycle,Base Substitution,37707,66.61,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L007,-71,Cycle,Base Insertion,37605,2.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-71,Cycle,Base Deletion,37605,3.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-72,Cycle,Base Substitution,37668,78.35,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L007,-72,Cycle,Base Insertion,37542,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-72,Cycle,Base Deletion,37542,3.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-73,Cycle,Base Substitution,37794,79.85,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L007,-73,Cycle,Base Insertion,37651,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-73,Cycle,Base Deletion,37651,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-74,Cycle,Base Substitution,37577,67.19,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L007,-74,Cycle,Base Insertion,37428,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-74,Cycle,Base Deletion,37428,3.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-75,Cycle,Base Substitution,37689,73.06,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L007,-75,Cycle,Base Insertion,37539,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-75,Cycle,Base Deletion,37539,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-76,Cycle,Base Substitution,37595,74.94,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L007,-76,Cycle,Base Insertion,37451,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-76,Cycle,Base Deletion,37451,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-77,Cycle,Base Substitution,37559,71.47,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L007,-77,Cycle,Base Insertion,37418,0.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-77,Cycle,Base Deletion,37418,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-78,Cycle,Base Substitution,37431,71.23,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L007,-78,Cycle,Base Insertion,37274,1.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-78,Cycle,Base Deletion,37274,4.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-79,Cycle,Base Substitution,37454,81.78,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L007,-79,Cycle,Base Insertion,37284,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-79,Cycle,Base Deletion,37284,6.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-8,Cycle,Base Substitution,38722,49.89,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L007,-8,Cycle,Base Insertion,38722,0.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-8,Cycle,Base Deletion,38722,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-80,Cycle,Base Substitution,37399,63.93,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L007,-80,Cycle,Base Insertion,37215,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-80,Cycle,Base Deletion,37215,5.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-81,Cycle,Base Substitution,37347,67.43,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L007,-81,Cycle,Base Insertion,37157,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-81,Cycle,Base Deletion,37157,4.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-82,Cycle,Base Substitution,37291,59.52,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L007,-82,Cycle,Base Insertion,37069,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-82,Cycle,Base Deletion,37069,5.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-83,Cycle,Base Substitution,37314,68.60,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L007,-83,Cycle,Base Insertion,37104,0.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-83,Cycle,Base Deletion,37104,5.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-84,Cycle,Base Substitution,37166,87.43,26.00,26.67,-0.67,After
REGRESSION.HCC1395_tumor.L007,-84,Cycle,Base Insertion,36952,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-84,Cycle,Base Deletion,36952,4.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-85,Cycle,Base Substitution,37253,78.34,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L007,-85,Cycle,Base Insertion,37039,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-85,Cycle,Base Deletion,37039,3.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-86,Cycle,Base Substitution,37234,64.02,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L007,-86,Cycle,Base Insertion,37032,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-86,Cycle,Base Deletion,37032,4.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-87,Cycle,Base Substitution,36979,80.95,27.00,26.41,0.59,After
REGRESSION.HCC1395_tumor.L007,-87,Cycle,Base Insertion,36766,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-87,Cycle,Base Deletion,36766,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-88,Cycle,Base Substitution,37062,74.39,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L007,-88,Cycle,Base Insertion,36828,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-88,Cycle,Base Deletion,36828,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-89,Cycle,Base Substitution,37111,82.12,27.00,26.10,0.90,After
REGRESSION.HCC1395_tumor.L007,-89,Cycle,Base Insertion,36860,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-89,Cycle,Base Deletion,36860,4.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-9,Cycle,Base Substitution,38581,61.23,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L007,-9,Cycle,Base Insertion,38581,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-9,Cycle,Base Deletion,38581,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-90,Cycle,Base Substitution,37007,81.53,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L007,-90,Cycle,Base Insertion,36737,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-90,Cycle,Base Deletion,36737,4.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-91,Cycle,Base Substitution,36813,71.36,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L007,-91,Cycle,Base Insertion,36519,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-91,Cycle,Base Deletion,36519,4.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-92,Cycle,Base Substitution,36748,70.11,27.00,26.41,0.59,After
REGRESSION.HCC1395_tumor.L007,-92,Cycle,Base Insertion,36464,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-92,Cycle,Base Deletion,36464,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-93,Cycle,Base Substitution,36688,69.48,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L007,-93,Cycle,Base Insertion,36398,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-93,Cycle,Base Deletion,36398,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-94,Cycle,Base Substitution,36683,65.04,27.00,26.51,0.49,After
REGRESSION.HCC1395_tumor.L007,-94,Cycle,Base Insertion,36421,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-94,Cycle,Base Deletion,36421,4.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-95,Cycle,Base Substitution,36559,69.15,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L007,-95,Cycle,Base Insertion,36299,1.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-95,Cycle,Base Deletion,36299,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-96,Cycle,Base Substitution,36623,82.29,26.00,26.52,-0.52,After
REGRESSION.HCC1395_tumor.L007,-96,Cycle,Base Insertion,36357,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-96,Cycle,Base Deletion,36357,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-97,Cycle,Base Substitution,36445,82.19,26.00,26.45,-0.45,After
REGRESSION.HCC1395_tumor.L007,-97,Cycle,Base Insertion,36188,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-97,Cycle,Base Deletion,36188,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-98,Cycle,Base Substitution,36254,61.94,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L007,-98,Cycle,Base Insertion,35977,2.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-98,Cycle,Base Deletion,35977,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-99,Cycle,Base Substitution,36283,75.72,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L007,-99,Cycle,Base Insertion,35988,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,-99,Cycle,Base Deletion,35988,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,1,Cycle,Base Substitution,38245,90.20,26.00,26.05,-0.05,After
REGRESSION.HCC1395_tumor.L007,10,Cycle,Base Substitution,38735,46.93,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L007,10,Cycle,Base Insertion,38735,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,10,Cycle,Base Deletion,38735,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,100,Cycle,Base Substitution,36243,58.95,28.00,27.29,0.71,After
REGRESSION.HCC1395_tumor.L007,100,Cycle,Base Insertion,35945,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,100,Cycle,Base Deletion,35945,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,101,Cycle,Base Substitution,36187,60.76,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L007,101,Cycle,Base Insertion,35881,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,101,Cycle,Base Deletion,35881,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,102,Cycle,Base Substitution,36140,59.75,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L007,102,Cycle,Base Insertion,35831,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,102,Cycle,Base Deletion,35831,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,103,Cycle,Base Substitution,36029,62.76,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L007,103,Cycle,Base Insertion,35718,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,103,Cycle,Base Deletion,35718,2.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,104,Cycle,Base Substitution,36020,64.64,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L007,104,Cycle,Base Insertion,35692,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,104,Cycle,Base Deletion,35692,2.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,105,Cycle,Base Substitution,35886,51.08,28.00,26.81,1.19,After
REGRESSION.HCC1395_tumor.L007,105,Cycle,Base Insertion,35558,2.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,105,Cycle,Base Deletion,35558,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,106,Cycle,Base Substitution,35784,71.60,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L007,106,Cycle,Base Insertion,35443,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,106,Cycle,Base Deletion,35443,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,107,Cycle,Base Substitution,35667,77.50,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L007,107,Cycle,Base Insertion,35308,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,107,Cycle,Base Deletion,35308,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,108,Cycle,Base Substitution,35630,77.96,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L007,108,Cycle,Base Insertion,35289,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,108,Cycle,Base Deletion,35289,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,109,Cycle,Base Substitution,35495,66.11,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L007,109,Cycle,Base Insertion,35155,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,109,Cycle,Base Deletion,35155,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,11,Cycle,Base Substitution,38731,44.80,29.00,27.67,1.33,After
REGRESSION.HCC1395_tumor.L007,11,Cycle,Base Insertion,38731,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,11,Cycle,Base Deletion,38731,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,110,Cycle,Base Substitution,35265,60.66,27.00,26.75,0.25,After
REGRESSION.HCC1395_tumor.L007,110,Cycle,Base Insertion,34948,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,110,Cycle,Base Deletion,34948,4.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,111,Cycle,Base Substitution,35329,55.60,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L007,111,Cycle,Base Insertion,35017,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,111,Cycle,Base Deletion,35017,4.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,112,Cycle,Base Substitution,35202,73.22,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L007,112,Cycle,Base Insertion,34872,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,112,Cycle,Base Deletion,34872,4.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,113,Cycle,Base Substitution,35259,57.46,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L007,113,Cycle,Base Insertion,34916,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,113,Cycle,Base Deletion,34916,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,114,Cycle,Base Substitution,35040,71.35,27.00,26.62,0.38,After
REGRESSION.HCC1395_tumor.L007,114,Cycle,Base Insertion,34706,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,114,Cycle,Base Deletion,34706,3.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,115,Cycle,Base Substitution,35057,67.14,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L007,115,Cycle,Base Insertion,34687,0.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,115,Cycle,Base Deletion,34687,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,116,Cycle,Base Substitution,34949,65.63,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L007,116,Cycle,Base Insertion,34575,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,116,Cycle,Base Deletion,34575,3.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,117,Cycle,Base Substitution,34754,60.90,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L007,117,Cycle,Base Insertion,34381,1.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,117,Cycle,Base Deletion,34381,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,118,Cycle,Base Substitution,34767,76.20,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L007,118,Cycle,Base Insertion,34398,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,118,Cycle,Base Deletion,34398,2.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,119,Cycle,Base Substitution,34816,72.42,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L007,119,Cycle,Base Insertion,34458,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,119,Cycle,Base Deletion,34458,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,12,Cycle,Base Substitution,38612,47.91,29.00,28.07,0.93,After
REGRESSION.HCC1395_tumor.L007,12,Cycle,Base Insertion,38612,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,12,Cycle,Base Deletion,38612,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,120,Cycle,Base Substitution,34637,70.63,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L007,120,Cycle,Base Insertion,34275,1.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,120,Cycle,Base Deletion,34275,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,121,Cycle,Base Substitution,34450,61.23,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L007,121,Cycle,Base Insertion,34075,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,121,Cycle,Base Deletion,34075,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,122,Cycle,Base Substitution,34499,83.27,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L007,122,Cycle,Base Insertion,34137,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,122,Cycle,Base Deletion,34137,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,123,Cycle,Base Substitution,34364,61.55,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L007,123,Cycle,Base Insertion,33995,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,123,Cycle,Base Deletion,33995,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,124,Cycle,Base Substitution,34181,63.54,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L007,124,Cycle,Base Insertion,33819,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,124,Cycle,Base Deletion,33819,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,125,Cycle,Base Substitution,34174,73.95,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L007,125,Cycle,Base Insertion,33796,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,125,Cycle,Base Deletion,33796,3.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,126,Cycle,Base Substitution,34060,54.67,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L007,126,Cycle,Base Insertion,33704,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,126,Cycle,Base Deletion,33704,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,127,Cycle,Base Substitution,33928,76.52,26.00,26.51,-0.51,After
REGRESSION.HCC1395_tumor.L007,127,Cycle,Base Insertion,33555,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,127,Cycle,Base Deletion,33555,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,128,Cycle,Base Substitution,33718,82.00,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L007,128,Cycle,Base Insertion,33357,2.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,128,Cycle,Base Deletion,33357,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,129,Cycle,Base Substitution,33689,81.17,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L007,129,Cycle,Base Insertion,33318,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,129,Cycle,Base Deletion,33318,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,13,Cycle,Base Substitution,38615,46.90,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L007,13,Cycle,Base Insertion,38615,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,13,Cycle,Base Deletion,38615,3.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,130,Cycle,Base Substitution,33640,70.03,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L007,130,Cycle,Base Insertion,33248,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,130,Cycle,Base Deletion,33248,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,131,Cycle,Base Substitution,33634,75.27,26.00,26.53,-0.53,After
REGRESSION.HCC1395_tumor.L007,131,Cycle,Base Insertion,33212,1.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,131,Cycle,Base Deletion,33212,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,132,Cycle,Base Substitution,33586,71.67,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L007,132,Cycle,Base Insertion,33174,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,132,Cycle,Base Deletion,33174,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,133,Cycle,Base Substitution,33322,70.33,27.00,26.46,0.54,After
REGRESSION.HCC1395_tumor.L007,133,Cycle,Base Insertion,32912,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,133,Cycle,Base Deletion,32912,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,134,Cycle,Base Substitution,33269,67.05,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L007,134,Cycle,Base Insertion,32874,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,134,Cycle,Base Deletion,32874,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,135,Cycle,Base Substitution,33174,76.64,26.00,26.33,-0.33,After
REGRESSION.HCC1395_tumor.L007,135,Cycle,Base Insertion,32793,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,135,Cycle,Base Deletion,32793,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,136,Cycle,Base Substitution,33011,74.29,26.00,26.54,-0.54,After
REGRESSION.HCC1395_tumor.L007,136,Cycle,Base Insertion,32620,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,136,Cycle,Base Deletion,32620,2.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,137,Cycle,Base Substitution,33013,84.16,26.00,26.45,-0.45,After
REGRESSION.HCC1395_tumor.L007,137,Cycle,Base Insertion,32604,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,137,Cycle,Base Deletion,32604,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,138,Cycle,Base Substitution,32902,57.36,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L007,138,Cycle,Base Insertion,32516,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,138,Cycle,Base Deletion,32516,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,139,Cycle,Base Substitution,32920,75.00,26.00,25.76,0.24,After
REGRESSION.HCC1395_tumor.L007,139,Cycle,Base Insertion,32498,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,139,Cycle,Base Deletion,32498,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,14,Cycle,Base Substitution,38606,40.03,29.00,27.67,1.33,After
REGRESSION.HCC1395_tumor.L007,14,Cycle,Base Insertion,38606,1.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,14,Cycle,Base Deletion,38606,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,140,Cycle,Base Substitution,32802,69.68,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L007,140,Cycle,Base Insertion,32399,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,140,Cycle,Base Deletion,32399,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,141,Cycle,Base Substitution,32693,70.06,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L007,141,Cycle,Base Insertion,32291,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,141,Cycle,Base Deletion,32291,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,142,Cycle,Base Substitution,32397,61.09,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L007,142,Cycle,Base Insertion,31942,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,142,Cycle,Base Deletion,31942,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,143,Cycle,Base Substitution,32482,65.82,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L007,143,Cycle,Base Insertion,32073,0.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,143,Cycle,Base Deletion,32073,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,144,Cycle,Base Substitution,32383,76.52,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L007,144,Cycle,Base Insertion,31933,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,144,Cycle,Base Deletion,31933,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,145,Cycle,Base Substitution,32143,65.86,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L007,145,Cycle,Base Insertion,31660,0.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,145,Cycle,Base Deletion,31660,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,146,Cycle,Base Substitution,32100,72.41,26.00,26.39,-0.39,After
REGRESSION.HCC1395_tumor.L007,146,Cycle,Base Insertion,31664,0.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,146,Cycle,Base Deletion,31664,0.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,147,Cycle,Base Substitution,31978,79.65,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L007,148,Cycle,Base Substitution,31858,98.28,25.00,26.62,-1.62,After
REGRESSION.HCC1395_tumor.L007,149,Cycle,Base Substitution,31672,82.79,26.00,26.22,-0.22,After
REGRESSION.HCC1395_tumor.L007,15,Cycle,Base Substitution,38501,38.10,29.00,27.77,1.23,After
REGRESSION.HCC1395_tumor.L007,15,Cycle,Base Insertion,38501,2.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,15,Cycle,Base Deletion,38501,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,150,Cycle,Base Substitution,31577,74.63,26.00,26.48,-0.48,After
REGRESSION.HCC1395_tumor.L007,16,Cycle,Base Substitution,38470,25.91,30.00,28.59,1.41,After
REGRESSION.HCC1395_tumor.L007,16,Cycle,Base Insertion,38470,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,16,Cycle,Base Deletion,38470,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,17,Cycle,Base Substitution,38505,40.08,29.00,28.35,0.65,After
REGRESSION.HCC1395_tumor.L007,17,Cycle,Base Insertion,38505,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,17,Cycle,Base Deletion,38505,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,18,Cycle,Base Substitution,38486,27.12,30.00,28.50,1.50,After
REGRESSION.HCC1395_tumor.L007,18,Cycle,Base Insertion,38486,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,18,Cycle,Base Deletion,38486,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,19,Cycle,Base Substitution,38671,21.10,30.00,28.64,1.36,After
REGRESSION.HCC1395_tumor.L007,19,Cycle,Base Insertion,38671,1.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,19,Cycle,Base Deletion,38671,2.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,2,Cycle,Base Substitution,38744,81.97,27.00,27.69,-0.69,After
REGRESSION.HCC1395_tumor.L007,20,Cycle,Base Substitution,38648,27.02,30.00,28.50,1.50,After
REGRESSION.HCC1395_tumor.L007,20,Cycle,Base Insertion,38648,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,20,Cycle,Base Deletion,38648,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,21,Cycle,Base Substitution,38545,34.66,29.00,28.52,0.48,After
REGRESSION.HCC1395_tumor.L007,21,Cycle,Base Insertion,38545,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,21,Cycle,Base Deletion,38545,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,22,Cycle,Base Substitution,38495,29.86,30.00,28.64,1.36,After
REGRESSION.HCC1395_tumor.L007,22,Cycle,Base Insertion,38495,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,22,Cycle,Base Deletion,38495,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,23,Cycle,Base Substitution,38471,31.11,30.00,28.74,1.26,After
REGRESSION.HCC1395_tumor.L007,23,Cycle,Base Insertion,38471,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,23,Cycle,Base Deletion,38471,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,24,Cycle,Base Substitution,38353,24.01,30.00,28.48,1.52,After
REGRESSION.HCC1395_tumor.L007,24,Cycle,Base Insertion,38353,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,24,Cycle,Base Deletion,38353,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,25,Cycle,Base Substitution,38348,31.14,30.00,28.68,1.32,After
REGRESSION.HCC1395_tumor.L007,25,Cycle,Base Insertion,38348,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,25,Cycle,Base Deletion,38348,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,26,Cycle,Base Substitution,38477,33.45,29.00,27.95,1.05,After
REGRESSION.HCC1395_tumor.L007,26,Cycle,Base Insertion,38477,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,26,Cycle,Base Deletion,38477,4.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,27,Cycle,Base Substitution,38384,43.70,29.00,27.78,1.22,After
REGRESSION.HCC1395_tumor.L007,27,Cycle,Base Insertion,38382,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,27,Cycle,Base Deletion,38382,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,28,Cycle,Base Substitution,38403,37.05,29.00,28.33,0.67,After
REGRESSION.HCC1395_tumor.L007,28,Cycle,Base Insertion,38403,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,28,Cycle,Base Deletion,38403,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,29,Cycle,Base Substitution,38449,36.23,29.00,28.16,0.84,After
REGRESSION.HCC1395_tumor.L007,29,Cycle,Base Insertion,38447,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,29,Cycle,Base Deletion,38447,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,3,Cycle,Base Substitution,38668,105.48,26.00,27.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,30,Cycle,Base Substitution,38422,35.42,29.00,27.83,1.17,After
REGRESSION.HCC1395_tumor.L007,30,Cycle,Base Insertion,38420,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,30,Cycle,Base Deletion,38420,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,31,Cycle,Base Substitution,38448,38.63,29.00,28.02,0.98,After
REGRESSION.HCC1395_tumor.L007,31,Cycle,Base Insertion,38446,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,31,Cycle,Base Deletion,38446,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,32,Cycle,Base Substitution,38405,58.28,28.00,27.92,0.08,After
REGRESSION.HCC1395_tumor.L007,32,Cycle,Base Insertion,38402,2.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,32,Cycle,Base Deletion,38402,4.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,33,Cycle,Base Substitution,38466,48.56,28.00,27.76,0.24,After
REGRESSION.HCC1395_tumor.L007,33,Cycle,Base Insertion,38463,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,33,Cycle,Base Deletion,38463,4.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,34,Cycle,Base Substitution,38477,45.67,28.00,27.79,0.21,After
REGRESSION.HCC1395_tumor.L007,34,Cycle,Base Insertion,38473,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,34,Cycle,Base Deletion,38473,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,35,Cycle,Base Substitution,38321,51.24,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L007,35,Cycle,Base Insertion,38319,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,35,Cycle,Base Deletion,38319,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,36,Cycle,Base Substitution,38384,49.12,28.00,27.90,0.10,After
REGRESSION.HCC1395_tumor.L007,36,Cycle,Base Insertion,38381,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,36,Cycle,Base Deletion,38381,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,37,Cycle,Base Substitution,38465,40.40,29.00,28.30,0.70,After
REGRESSION.HCC1395_tumor.L007,37,Cycle,Base Insertion,38462,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,37,Cycle,Base Deletion,38462,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,38,Cycle,Base Substitution,38368,39.67,29.00,27.82,1.18,After
REGRESSION.HCC1395_tumor.L007,38,Cycle,Base Insertion,38364,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,38,Cycle,Base Deletion,38364,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,39,Cycle,Base Substitution,38263,39.90,29.00,28.18,0.82,After
REGRESSION.HCC1395_tumor.L007,39,Cycle,Base Insertion,38259,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,39,Cycle,Base Deletion,38259,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,4,Cycle,Base Substitution,38726,73.68,27.00,27.01,-0.01,After
REGRESSION.HCC1395_tumor.L007,40,Cycle,Base Substitution,38294,48.91,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L007,40,Cycle,Base Insertion,38289,2.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,40,Cycle,Base Deletion,38289,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,41,Cycle,Base Substitution,38325,48.48,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L007,41,Cycle,Base Insertion,38321,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,41,Cycle,Base Deletion,38321,4.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,42,Cycle,Base Substitution,38255,49.60,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L007,42,Cycle,Base Insertion,38249,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,42,Cycle,Base Deletion,38249,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,43,Cycle,Base Substitution,38272,46.24,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L007,43,Cycle,Base Insertion,38265,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,43,Cycle,Base Deletion,38265,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,44,Cycle,Base Substitution,38200,45.95,28.00,27.51,0.49,After
REGRESSION.HCC1395_tumor.L007,44,Cycle,Base Insertion,38195,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,44,Cycle,Base Deletion,38195,2.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,45,Cycle,Base Substitution,38212,50.01,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L007,45,Cycle,Base Insertion,38204,0.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,45,Cycle,Base Deletion,38204,3.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,46,Cycle,Base Substitution,38347,44.15,29.00,27.83,1.17,After
REGRESSION.HCC1395_tumor.L007,46,Cycle,Base Insertion,38338,0.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,46,Cycle,Base Deletion,38338,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,47,Cycle,Base Substitution,38189,53.67,28.00,27.56,0.44,After
REGRESSION.HCC1395_tumor.L007,47,Cycle,Base Insertion,38178,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,47,Cycle,Base Deletion,38178,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,48,Cycle,Base Substitution,38179,46.49,28.00,27.62,0.38,After
REGRESSION.HCC1395_tumor.L007,48,Cycle,Base Insertion,38168,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,48,Cycle,Base Deletion,38168,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,49,Cycle,Base Substitution,38204,49.98,29.00,28.30,0.70,After
REGRESSION.HCC1395_tumor.L007,49,Cycle,Base Insertion,38192,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,49,Cycle,Base Deletion,38192,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,5,Cycle,Base Substitution,38646,51.57,28.00,27.81,0.19,After
REGRESSION.HCC1395_tumor.L007,5,Cycle,Base Insertion,38646,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,5,Cycle,Base Deletion,38646,0.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,50,Cycle,Base Substitution,38231,43.54,29.00,27.78,1.22,After
REGRESSION.HCC1395_tumor.L007,50,Cycle,Base Insertion,38214,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,50,Cycle,Base Deletion,38214,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,51,Cycle,Base Substitution,38189,51.53,28.00,27.96,0.04,After
REGRESSION.HCC1395_tumor.L007,51,Cycle,Base Insertion,38167,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,51,Cycle,Base Deletion,38167,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,52,Cycle,Base Substitution,38182,43.10,29.00,27.50,1.50,After
REGRESSION.HCC1395_tumor.L007,52,Cycle,Base Insertion,38151,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,52,Cycle,Base Deletion,38151,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,53,Cycle,Base Substitution,38106,37.37,29.00,27.70,1.30,After
REGRESSION.HCC1395_tumor.L007,53,Cycle,Base Insertion,38074,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,53,Cycle,Base Deletion,38074,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,54,Cycle,Base Substitution,38118,46.48,28.00,27.68,0.32,After
REGRESSION.HCC1395_tumor.L007,54,Cycle,Base Insertion,38080,4.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,54,Cycle,Base Deletion,38080,3.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,55,Cycle,Base Substitution,38214,44.01,29.00,27.60,1.40,After
REGRESSION.HCC1395_tumor.L007,55,Cycle,Base Insertion,38174,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,55,Cycle,Base Deletion,38174,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,56,Cycle,Base Substitution,38160,41.65,29.00,27.77,1.23,After
REGRESSION.HCC1395_tumor.L007,56,Cycle,Base Insertion,38127,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,56,Cycle,Base Deletion,38127,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,57,Cycle,Base Substitution,38172,58.68,28.00,27.76,0.24,After
REGRESSION.HCC1395_tumor.L007,57,Cycle,Base Insertion,38121,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,57,Cycle,Base Deletion,38121,4.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,58,Cycle,Base Substitution,38113,36.45,29.00,27.96,1.04,After
REGRESSION.HCC1395_tumor.L007,58,Cycle,Base Insertion,38062,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,58,Cycle,Base Deletion,38062,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,59,Cycle,Base Substitution,38134,41.02,29.00,27.86,1.14,After
REGRESSION.HCC1395_tumor.L007,59,Cycle,Base Insertion,38084,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,59,Cycle,Base Deletion,38084,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,6,Cycle,Base Substitution,38644,43.12,29.00,27.62,1.38,After
REGRESSION.HCC1395_tumor.L007,6,Cycle,Base Insertion,38644,0.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,6,Cycle,Base Deletion,38644,0.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,60,Cycle,Base Substitution,38065,55.21,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L007,60,Cycle,Base Insertion,38004,1.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,60,Cycle,Base Deletion,38004,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,61,Cycle,Base Substitution,38057,50.25,28.00,27.66,0.34,After
REGRESSION.HCC1395_tumor.L007,61,Cycle,Base Insertion,38001,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,61,Cycle,Base Deletion,38001,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,62,Cycle,Base Substitution,38070,40.79,29.00,28.17,0.83,After
REGRESSION.HCC1395_tumor.L007,62,Cycle,Base Insertion,38001,3.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,62,Cycle,Base Deletion,38001,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,63,Cycle,Base Substitution,38012,55.60,28.00,27.53,0.47,After
REGRESSION.HCC1395_tumor.L007,63,Cycle,Base Insertion,37942,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,63,Cycle,Base Deletion,37942,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,64,Cycle,Base Substitution,38049,47.67,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L007,64,Cycle,Base Insertion,37976,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,64,Cycle,Base Deletion,37976,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,65,Cycle,Base Substitution,38145,53.54,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L007,65,Cycle,Base Insertion,38058,1.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,65,Cycle,Base Deletion,38058,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,66,Cycle,Base Substitution,37872,63.42,28.00,27.39,0.61,After
REGRESSION.HCC1395_tumor.L007,66,Cycle,Base Insertion,37781,2.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,66,Cycle,Base Deletion,37781,3.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,67,Cycle,Base Substitution,37917,52.51,28.00,27.14,0.86,After
REGRESSION.HCC1395_tumor.L007,67,Cycle,Base Insertion,37816,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,67,Cycle,Base Deletion,37816,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,68,Cycle,Base Substitution,37998,54.79,28.00,27.38,0.62,After
REGRESSION.HCC1395_tumor.L007,68,Cycle,Base Insertion,37882,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,68,Cycle,Base Deletion,37882,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,69,Cycle,Base Substitution,37780,46.91,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L007,69,Cycle,Base Insertion,37673,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,69,Cycle,Base Deletion,37673,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,7,Cycle,Base Substitution,38497,56.78,28.00,27.39,0.61,After
REGRESSION.HCC1395_tumor.L007,7,Cycle,Base Insertion,38497,0.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,7,Cycle,Base Deletion,38497,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,70,Cycle,Base Substitution,37879,56.31,28.00,27.51,0.49,After
REGRESSION.HCC1395_tumor.L007,70,Cycle,Base Insertion,37768,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,70,Cycle,Base Deletion,37768,3.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,71,Cycle,Base Substitution,37766,59.88,28.00,27.47,0.53,After
REGRESSION.HCC1395_tumor.L007,71,Cycle,Base Insertion,37647,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,71,Cycle,Base Deletion,37647,4.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,72,Cycle,Base Substitution,37763,44.75,28.00,27.57,0.43,After
REGRESSION.HCC1395_tumor.L007,72,Cycle,Base Insertion,37634,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,72,Cycle,Base Deletion,37634,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,73,Cycle,Base Substitution,37698,54.09,28.00,27.25,0.75,After
REGRESSION.HCC1395_tumor.L007,73,Cycle,Base Insertion,37563,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,73,Cycle,Base Deletion,37563,5.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,74,Cycle,Base Substitution,37665,52.84,28.00,27.80,0.20,After
REGRESSION.HCC1395_tumor.L007,74,Cycle,Base Insertion,37520,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,74,Cycle,Base Deletion,37520,5.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,75,Cycle,Base Substitution,37694,61.39,28.00,27.27,0.73,After
REGRESSION.HCC1395_tumor.L007,75,Cycle,Base Insertion,37533,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,75,Cycle,Base Deletion,37533,4.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,76,Cycle,Base Substitution,37640,53.98,28.00,27.46,0.54,After
REGRESSION.HCC1395_tumor.L007,76,Cycle,Base Insertion,37500,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,76,Cycle,Base Deletion,37500,5.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,77,Cycle,Base Substitution,37575,54.01,28.00,27.24,0.76,After
REGRESSION.HCC1395_tumor.L007,77,Cycle,Base Insertion,37426,1.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,77,Cycle,Base Deletion,37426,4.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,78,Cycle,Base Substitution,37487,43.99,29.00,28.16,0.84,After
REGRESSION.HCC1395_tumor.L007,78,Cycle,Base Insertion,37335,4.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,78,Cycle,Base Deletion,37335,4.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,79,Cycle,Base Substitution,37373,56.96,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L007,79,Cycle,Base Insertion,37209,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,79,Cycle,Base Deletion,37209,4.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,8,Cycle,Base Substitution,38684,58.44,28.00,27.35,0.65,After
REGRESSION.HCC1395_tumor.L007,8,Cycle,Base Insertion,38684,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,8,Cycle,Base Deletion,38684,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,80,Cycle,Base Substitution,37376,69.68,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L007,80,Cycle,Base Insertion,37189,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,80,Cycle,Base Deletion,37189,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,81,Cycle,Base Substitution,37327,52.28,28.00,27.29,0.71,After
REGRESSION.HCC1395_tumor.L007,81,Cycle,Base Insertion,37144,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,81,Cycle,Base Deletion,37144,5.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,82,Cycle,Base Substitution,37281,54.17,28.00,27.27,0.73,After
REGRESSION.HCC1395_tumor.L007,82,Cycle,Base Insertion,37072,0.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,82,Cycle,Base Deletion,37072,4.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,83,Cycle,Base Substitution,37193,60.23,28.00,27.15,0.85,After
REGRESSION.HCC1395_tumor.L007,83,Cycle,Base Insertion,36987,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,83,Cycle,Base Deletion,36987,4.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,84,Cycle,Base Substitution,37194,66.83,27.00,27.30,-0.30,After
REGRESSION.HCC1395_tumor.L007,84,Cycle,Base Insertion,36991,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,84,Cycle,Base Deletion,36991,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,85,Cycle,Base Substitution,37157,62.53,28.00,27.14,0.86,After
REGRESSION.HCC1395_tumor.L007,85,Cycle,Base Insertion,36944,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,85,Cycle,Base Deletion,36944,4.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,86,Cycle,Base Substitution,37188,60.89,27.00,26.96,0.04,After
REGRESSION.HCC1395_tumor.L007,86,Cycle,Base Insertion,36979,2.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,86,Cycle,Base Deletion,36979,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,87,Cycle,Base Substitution,37078,64.42,27.00,26.99,0.01,After
REGRESSION.HCC1395_tumor.L007,87,Cycle,Base Insertion,36863,1.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,87,Cycle,Base Deletion,36863,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,88,Cycle,Base Substitution,37153,47.47,28.00,27.15,0.85,After
REGRESSION.HCC1395_tumor.L007,88,Cycle,Base Insertion,36926,2.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,88,Cycle,Base Deletion,36926,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,89,Cycle,Base Substitution,36877,68.89,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L007,89,Cycle,Base Insertion,36629,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,89,Cycle,Base Deletion,36629,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,9,Cycle,Base Substitution,38651,45.18,29.00,27.57,1.43,After
REGRESSION.HCC1395_tumor.L007,9,Cycle,Base Insertion,38651,0.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,9,Cycle,Base Deletion,38651,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,90,Cycle,Base Substitution,36913,58.57,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L007,90,Cycle,Base Insertion,36628,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,90,Cycle,Base Deletion,36628,4.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,91,Cycle,Base Substitution,36791,58.63,28.00,27.18,0.82,After
REGRESSION.HCC1395_tumor.L007,91,Cycle,Base Insertion,36496,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,91,Cycle,Base Deletion,36496,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,92,Cycle,Base Substitution,36859,57.54,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L007,92,Cycle,Base Insertion,36572,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,92,Cycle,Base Deletion,36572,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,93,Cycle,Base Substitution,36761,59.91,27.00,26.88,0.12,After
REGRESSION.HCC1395_tumor.L007,93,Cycle,Base Insertion,36485,1.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,93,Cycle,Base Deletion,36485,2.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,94,Cycle,Base Substitution,36660,56.59,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L007,94,Cycle,Base Insertion,36400,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,94,Cycle,Base Deletion,36400,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,95,Cycle,Base Substitution,36571,59.89,27.00,27.00,0.00,After
REGRESSION.HCC1395_tumor.L007,95,Cycle,Base Insertion,36310,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,95,Cycle,Base Deletion,36310,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,96,Cycle,Base Substitution,36515,60.36,28.00,27.39,0.61,After
REGRESSION.HCC1395_tumor.L007,96,Cycle,Base Insertion,36243,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,96,Cycle,Base Deletion,36243,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,97,Cycle,Base Substitution,36465,64.51,27.00,27.06,-0.06,After
REGRESSION.HCC1395_tumor.L007,97,Cycle,Base Insertion,36194,2.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,97,Cycle,Base Deletion,36194,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,98,Cycle,Base Substitution,36403,78.42,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L007,98,Cycle,Base Insertion,36125,1.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,98,Cycle,Base Deletion,36125,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,99,Cycle,Base Substitution,36249,52.43,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L007,99,Cycle,Base Insertion,35963,0.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,99,Cycle,Base Deletion,35963,2.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L007,10,QualityScore,Base Substitution,14632,1473.69,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L007,11,QualityScore,Base Substitution,14447,1089.69,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L007,12,QualityScore,Base Substitution,21601,1223.31,12.00,12.00,0.00,After
REGRESSION.HCC1395_tumor.L007,13,QualityScore,Base Substitution,5961,41.67,17.00,13.00,4.00,After
REGRESSION.HCC1395_tumor.L007,14,QualityScore,Base Substitution,17628,363.85,16.00,14.00,2.00,After
REGRESSION.HCC1395_tumor.L007,15,QualityScore,Base Substitution,17100,13.17,21.00,15.00,6.00,After
REGRESSION.HCC1395_tumor.L007,16,QualityScore,Base Substitution,8309,2.84,20.00,16.00,4.00,After
REGRESSION.HCC1395_tumor.L007,17,QualityScore,Base Substitution,14178,2.57,22.00,17.00,5.00,After
REGRESSION.HCC1395_tumor.L007,22,QualityScore,Base Substitution,297,0.12,22.00,22.00,0.00,After
REGRESSION.HCC1395_tumor.L007,23,QualityScore,Base Substitution,99680,628.72,22.00,23.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,24,QualityScore,Base Substitution,101552,391.84,24.00,24.00,0.00,After
REGRESSION.HCC1395_tumor.L007,25,QualityScore,Base Substitution,140050,208.27,27.00,25.00,2.00,After
REGRESSION.HCC1395_tumor.L007,28,QualityScore,Base Substitution,7659,3.73,28.00,28.00,0.00,After
REGRESSION.HCC1395_tumor.L007,29,QualityScore,Base Substitution,57779,99.22,28.00,29.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,30,QualityScore,Base Substitution,2492682,1578.99,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L007,31,QualityScore,Base Substitution,2844746,1244.04,33.00,31.00,2.00,After
REGRESSION.HCC1395_tumor.L007,32,QualityScore,Base Substitution,4652811,1073.69,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L007,33,QualityScore,Base Substitution,375156,75.45,35.00,33.00,2.00,After
REGRESSION.HCC1395_tumor.L007,45,QualityScore,Base Insertion,10952123,435.78,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L007,45,QualityScore,Base Deletion,10952123,992.30,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L007,8,QualityScore,Base Substitution,1459,258.41,8.00,8.00,0.00,After
REGRESSION.HCC1395_tumor.L007,9,QualityScore,Base Substitution,64396,8729.24,9.00,9.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AA,Context,Base Substitution,831398,1822.00,27.00,25.48,1.52,After
REGRESSION.HCC1395_tumor.L008,AAA,Context,Base Insertion,295364,58.93,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L008,AAA,Context,Base Deletion,295364,195.95,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L008,AAC,Context,Base Insertion,131279,6.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AAC,Context,Base Deletion,131279,10.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AAG,Context,Base Insertion,196934,6.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AAG,Context,Base Deletion,196934,9.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AAT,Context,Base Insertion,174256,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AAT,Context,Base Deletion,174256,14.34,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,AC,Context,Base Substitution,528754,1907.49,24.00,24.70,-0.70,After
REGRESSION.HCC1395_tumor.L008,ACA,Context,Base Insertion,203645,19.15,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,ACA,Context,Base Deletion,203645,34.51,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L008,ACC,Context,Base Insertion,146082,6.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ACC,Context,Base Deletion,146082,6.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ACG,Context,Base Insertion,30673,0.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ACG,Context,Base Deletion,30673,2.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ACT,Context,Base Insertion,156989,2.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ACT,Context,Base Deletion,156989,13.74,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,AG,Context,Base Substitution,794831,619.31,31.00,28.68,2.32,After
REGRESSION.HCC1395_tumor.L008,AGA,Context,Base Insertion,220466,5.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AGA,Context,Base Deletion,220466,13.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AGC,Context,Base Insertion,191152,0.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AGC,Context,Base Deletion,191152,6.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AGG,Context,Base Insertion,225693,14.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AGG,Context,Base Deletion,225693,7.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AGT,Context,Base Insertion,154005,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AGT,Context,Base Deletion,154005,6.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,AT,Context,Base Substitution,601661,639.33,30.00,27.61,2.39,After
REGRESSION.HCC1395_tumor.L008,ATA,Context,Base Insertion,135161,10.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ATA,Context,Base Deletion,135161,7.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ATC,Context,Base Insertion,120639,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ATC,Context,Base Deletion,120639,6.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ATG,Context,Base Insertion,174057,4.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ATG,Context,Base Deletion,174057,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ATT,Context,Base Insertion,182598,4.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,ATT,Context,Base Deletion,182598,7.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CA,Context,Base Substitution,852318,1806.54,27.00,26.39,0.61,After
REGRESSION.HCC1395_tumor.L008,CAA,Context,Base Insertion,171301,5.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CAA,Context,Base Deletion,171301,14.65,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,CAC,Context,Base Insertion,183202,22.00,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,CAC,Context,Base Deletion,183202,33.31,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,CAG,Context,Base Insertion,289765,7.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CAG,Context,Base Deletion,289765,12.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CAT,Context,Base Insertion,169787,6.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CAT,Context,Base Deletion,169787,6.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CC,Context,Base Substitution,762944,2431.74,25.00,24.58,0.42,After
REGRESSION.HCC1395_tumor.L008,CCA,Context,Base Insertion,244622,6.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CCA,Context,Base Deletion,244622,7.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CCC,Context,Base Insertion,211880,12.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CCC,Context,Base Deletion,211880,16.43,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,CCG,Context,Base Insertion,53524,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CCG,Context,Base Deletion,53524,5.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CCT,Context,Base Insertion,242426,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CCT,Context,Base Deletion,242426,9.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CG,Context,Base Substitution,160744,526.69,25.00,24.84,0.16,After
REGRESSION.HCC1395_tumor.L008,CGA,Context,Base Insertion,55797,4.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CGA,Context,Base Deletion,55797,0.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CGC,Context,Base Insertion,80153,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CGC,Context,Base Deletion,80153,5.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CGG,Context,Base Insertion,96991,2.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CGG,Context,Base Deletion,96991,6.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CGT,Context,Base Insertion,62762,0.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CGT,Context,Base Deletion,62762,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CT,Context,Base Substitution,836482,413.10,33.00,29.34,3.66,After
REGRESSION.HCC1395_tumor.L008,CTA,Context,Base Insertion,96160,0.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CTA,Context,Base Deletion,96160,6.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CTC,Context,Base Insertion,201346,6.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CTC,Context,Base Deletion,201346,17.30,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,CTG,Context,Base Insertion,291107,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CTG,Context,Base Deletion,291107,13.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CTT,Context,Base Insertion,209522,8.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,CTT,Context,Base Deletion,209522,9.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GA,Context,Base Substitution,697695,1028.91,28.00,27.03,0.97,After
REGRESSION.HCC1395_tumor.L008,GAA,Context,Base Insertion,207542,6.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GAA,Context,Base Deletion,207542,9.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GAC,Context,Base Insertion,117742,2.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GAC,Context,Base Deletion,117742,7.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GAG,Context,Base Insertion,205758,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GAG,Context,Base Deletion,205758,12.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GAT,Context,Base Insertion,124420,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GAT,Context,Base Deletion,124420,2.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GC,Context,Base Substitution,659940,1479.73,26.00,25.96,0.04,After
REGRESSION.HCC1395_tumor.L008,GCA,Context,Base Insertion,202633,5.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GCA,Context,Base Deletion,202633,7.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GCC,Context,Base Insertion,199098,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GCC,Context,Base Deletion,199098,9.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GCG,Context,Base Insertion,49327,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GCG,Context,Base Deletion,49327,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GCT,Context,Base Insertion,208821,4.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GCT,Context,Base Deletion,208821,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GG,Context,Base Substitution,786927,700.66,30.00,28.08,1.92,After
REGRESSION.HCC1395_tumor.L008,GGA,Context,Base Insertion,213597,18.74,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,GGA,Context,Base Deletion,213597,12.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GGC,Context,Base Insertion,195862,5.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GGC,Context,Base Deletion,195862,6.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GGG,Context,Base Insertion,217765,10.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GGG,Context,Base Deletion,217765,23.37,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,GGT,Context,Base Insertion,157765,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GGT,Context,Base Deletion,157765,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GT,Context,Base Substitution,588444,1013.96,28.00,26.88,1.12,After
REGRESSION.HCC1395_tumor.L008,GTA,Context,Base Insertion,100817,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GTA,Context,Base Deletion,100817,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GTC,Context,Base Insertion,126542,1.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GTC,Context,Base Deletion,126542,3.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GTG,Context,Base Insertion,199603,12.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GTG,Context,Base Deletion,199603,35.02,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L008,GTT,Context,Base Insertion,148533,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,GTT,Context,Base Deletion,148533,16.14,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,TA,Context,Base Substitution,483567,1184.27,26.00,24.97,1.03,After
REGRESSION.HCC1395_tumor.L008,TAA,Context,Base Insertion,150119,10.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TAA,Context,Base Deletion,150119,15.22,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,TAC,Context,Base Insertion,93201,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TAC,Context,Base Deletion,93201,4.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TAG,Context,Base Insertion,96053,2.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TAG,Context,Base Deletion,96053,0.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TAT,Context,Base Insertion,128848,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TAT,Context,Base Deletion,128848,5.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TC,Context,Base Substitution,645400,1660.56,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L008,TCA,Context,Base Insertion,194774,5.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TCA,Context,Base Deletion,194774,15.58,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,TCC,Context,Base Insertion,200924,24.96,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,TCC,Context,Base Deletion,200924,9.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TCG,Context,Base Insertion,26018,0.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TCG,Context,Base Deletion,26018,0.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TCT,Context,Base Insertion,222477,3.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TCT,Context,Base Deletion,222477,13.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TG,Context,Base Substitution,840561,344.98,33.00,29.36,3.64,After
REGRESSION.HCC1395_tumor.L008,TGA,Context,Base Insertion,202573,1.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TGA,Context,Base Deletion,202573,6.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TGC,Context,Base Insertion,188546,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TGC,Context,Base Deletion,188546,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TGG,Context,Base Insertion,240727,4.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TGG,Context,Base Deletion,240727,7.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TGT,Context,Base Insertion,209958,13.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TGT,Context,Base Deletion,209958,41.40,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L008,TT,Context,Base Substitution,841692,964.33,29.00,27.59,1.41,After
REGRESSION.HCC1395_tumor.L008,TTA,Context,Base Insertion,147846,6.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TTA,Context,Base Deletion,147846,8.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TTC,Context,Base Insertion,192921,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TTC,Context,Base Deletion,192921,13.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TTG,Context,Base Insertion,169959,5.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TTG,Context,Base Deletion,169959,9.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,TTT,Context,Base Insertion,295511,42.62,43.00,45.00,-2.00,After
REGRESSION.HCC1395_tumor.L008,TTT,Context,Base Deletion,295511,186.78,37.00,45.00,-8.00,After
REGRESSION.HCC1395_tumor.L008,-1,Cycle,Base Substitution,38344,161.79,24.00,23.34,0.66,After
REGRESSION.HCC1395_tumor.L008,-10,Cycle,Base Substitution,38700,60.95,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L008,-10,Cycle,Base Insertion,38700,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-10,Cycle,Base Deletion,38700,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-100,Cycle,Base Substitution,36325,75.03,27.00,26.52,0.48,After
REGRESSION.HCC1395_tumor.L008,-100,Cycle,Base Insertion,36054,3.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-100,Cycle,Base Deletion,36054,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-101,Cycle,Base Substitution,36291,91.70,26.00,25.66,0.34,After
REGRESSION.HCC1395_tumor.L008,-101,Cycle,Base Insertion,36034,1.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-101,Cycle,Base Deletion,36034,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-102,Cycle,Base Substitution,36303,62.71,27.00,26.59,0.41,After
REGRESSION.HCC1395_tumor.L008,-102,Cycle,Base Insertion,36032,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-102,Cycle,Base Deletion,36032,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-103,Cycle,Base Substitution,36083,85.20,26.00,25.82,0.18,After
REGRESSION.HCC1395_tumor.L008,-103,Cycle,Base Insertion,35803,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-103,Cycle,Base Deletion,35803,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-104,Cycle,Base Substitution,35961,79.02,27.00,26.48,0.52,After
REGRESSION.HCC1395_tumor.L008,-104,Cycle,Base Insertion,35653,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-104,Cycle,Base Deletion,35653,3.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-105,Cycle,Base Substitution,36059,87.35,26.00,26.70,-0.70,After
REGRESSION.HCC1395_tumor.L008,-105,Cycle,Base Insertion,35746,0.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-105,Cycle,Base Deletion,35746,3.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-106,Cycle,Base Substitution,35784,62.56,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L008,-106,Cycle,Base Insertion,35490,0.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-106,Cycle,Base Deletion,35490,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-107,Cycle,Base Substitution,35783,80.12,26.00,26.35,-0.35,After
REGRESSION.HCC1395_tumor.L008,-107,Cycle,Base Insertion,35483,0.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-107,Cycle,Base Deletion,35483,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-108,Cycle,Base Substitution,35778,81.01,26.00,25.78,0.22,After
REGRESSION.HCC1395_tumor.L008,-108,Cycle,Base Insertion,35476,3.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-108,Cycle,Base Deletion,35476,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-109,Cycle,Base Substitution,35773,90.95,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L008,-109,Cycle,Base Insertion,35451,0.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-109,Cycle,Base Deletion,35451,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-11,Cycle,Base Substitution,38746,61.47,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L008,-11,Cycle,Base Insertion,38746,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-11,Cycle,Base Deletion,38746,4.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-110,Cycle,Base Substitution,35637,73.05,27.00,26.51,0.49,After
REGRESSION.HCC1395_tumor.L008,-110,Cycle,Base Insertion,35279,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-110,Cycle,Base Deletion,35279,2.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-111,Cycle,Base Substitution,35546,75.01,27.00,26.45,0.55,After
REGRESSION.HCC1395_tumor.L008,-111,Cycle,Base Insertion,35177,1.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-111,Cycle,Base Deletion,35177,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-112,Cycle,Base Substitution,35549,88.76,26.00,25.77,0.23,After
REGRESSION.HCC1395_tumor.L008,-112,Cycle,Base Insertion,35191,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-112,Cycle,Base Deletion,35191,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-113,Cycle,Base Substitution,35387,99.01,26.00,26.10,-0.10,After
REGRESSION.HCC1395_tumor.L008,-113,Cycle,Base Insertion,35024,2.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-113,Cycle,Base Deletion,35024,2.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-114,Cycle,Base Substitution,35134,69.84,27.00,26.45,0.55,After
REGRESSION.HCC1395_tumor.L008,-114,Cycle,Base Insertion,34762,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-114,Cycle,Base Deletion,34762,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-115,Cycle,Base Substitution,35180,73.61,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L008,-115,Cycle,Base Insertion,34796,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-115,Cycle,Base Deletion,34796,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-116,Cycle,Base Substitution,35070,84.50,26.00,26.20,-0.20,After
REGRESSION.HCC1395_tumor.L008,-116,Cycle,Base Insertion,34663,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-116,Cycle,Base Deletion,34663,3.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-117,Cycle,Base Substitution,34927,84.58,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L008,-117,Cycle,Base Insertion,34533,1.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-117,Cycle,Base Deletion,34533,2.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-118,Cycle,Base Substitution,34869,79.01,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L008,-118,Cycle,Base Insertion,34483,0.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-118,Cycle,Base Deletion,34483,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-119,Cycle,Base Substitution,34803,111.22,25.00,26.30,-1.30,After
REGRESSION.HCC1395_tumor.L008,-119,Cycle,Base Insertion,34408,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-119,Cycle,Base Deletion,34408,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-12,Cycle,Base Substitution,38656,49.91,28.00,27.52,0.48,After
REGRESSION.HCC1395_tumor.L008,-12,Cycle,Base Insertion,38656,0.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-12,Cycle,Base Deletion,38656,3.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-120,Cycle,Base Substitution,34784,89.72,26.00,25.72,0.28,After
REGRESSION.HCC1395_tumor.L008,-120,Cycle,Base Insertion,34407,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-120,Cycle,Base Deletion,34407,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-121,Cycle,Base Substitution,34495,81.29,26.00,26.24,-0.24,After
REGRESSION.HCC1395_tumor.L008,-121,Cycle,Base Insertion,34112,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-121,Cycle,Base Deletion,34112,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-122,Cycle,Base Substitution,34541,82.18,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L008,-122,Cycle,Base Insertion,34153,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-122,Cycle,Base Deletion,34153,2.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-123,Cycle,Base Substitution,34451,78.68,26.00,26.34,-0.34,After
REGRESSION.HCC1395_tumor.L008,-123,Cycle,Base Insertion,34055,1.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-123,Cycle,Base Deletion,34055,2.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-124,Cycle,Base Substitution,34286,77.74,26.00,26.16,-0.16,After
REGRESSION.HCC1395_tumor.L008,-124,Cycle,Base Insertion,33898,0.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-124,Cycle,Base Deletion,33898,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-125,Cycle,Base Substitution,34327,103.60,26.00,26.17,-0.17,After
REGRESSION.HCC1395_tumor.L008,-125,Cycle,Base Insertion,33929,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-125,Cycle,Base Deletion,33929,2.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-126,Cycle,Base Substitution,34114,87.25,26.00,26.11,-0.11,After
REGRESSION.HCC1395_tumor.L008,-126,Cycle,Base Insertion,33710,0.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-126,Cycle,Base Deletion,33710,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-127,Cycle,Base Substitution,34093,87.90,26.00,26.08,-0.08,After
REGRESSION.HCC1395_tumor.L008,-127,Cycle,Base Insertion,33715,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-127,Cycle,Base Deletion,33715,2.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-128,Cycle,Base Substitution,33850,84.85,26.00,26.20,-0.20,After
REGRESSION.HCC1395_tumor.L008,-128,Cycle,Base Insertion,33475,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-128,Cycle,Base Deletion,33475,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-129,Cycle,Base Substitution,33730,85.02,26.00,26.17,-0.17,After
REGRESSION.HCC1395_tumor.L008,-129,Cycle,Base Insertion,33342,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-129,Cycle,Base Deletion,33342,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-13,Cycle,Base Substitution,38664,66.34,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L008,-13,Cycle,Base Insertion,38664,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-13,Cycle,Base Deletion,38664,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-130,Cycle,Base Substitution,33776,80.10,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L008,-130,Cycle,Base Insertion,33389,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-130,Cycle,Base Deletion,33389,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-131,Cycle,Base Substitution,33631,65.11,27.00,26.24,0.76,After
REGRESSION.HCC1395_tumor.L008,-131,Cycle,Base Insertion,33233,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-131,Cycle,Base Deletion,33233,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-132,Cycle,Base Substitution,33556,81.60,26.00,26.17,-0.17,After
REGRESSION.HCC1395_tumor.L008,-132,Cycle,Base Insertion,33152,1.21,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-132,Cycle,Base Deletion,33152,1.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-133,Cycle,Base Substitution,33472,73.17,27.00,26.43,0.57,After
REGRESSION.HCC1395_tumor.L008,-133,Cycle,Base Insertion,33068,0.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-133,Cycle,Base Deletion,33068,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-134,Cycle,Base Substitution,33371,86.24,26.00,26.18,-0.18,After
REGRESSION.HCC1395_tumor.L008,-134,Cycle,Base Insertion,32933,0.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-134,Cycle,Base Deletion,32933,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-135,Cycle,Base Substitution,33286,71.50,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L008,-135,Cycle,Base Insertion,32850,0.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-135,Cycle,Base Deletion,32850,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-136,Cycle,Base Substitution,33068,74.07,26.00,26.05,-0.05,After
REGRESSION.HCC1395_tumor.L008,-136,Cycle,Base Insertion,32628,0.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-136,Cycle,Base Deletion,32628,1.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-137,Cycle,Base Substitution,33077,82.62,26.00,26.37,-0.37,After
REGRESSION.HCC1395_tumor.L008,-137,Cycle,Base Insertion,32610,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-137,Cycle,Base Deletion,32610,2.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-138,Cycle,Base Substitution,32935,73.32,26.00,26.27,-0.27,After
REGRESSION.HCC1395_tumor.L008,-138,Cycle,Base Insertion,32481,0.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-138,Cycle,Base Deletion,32481,1.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-139,Cycle,Base Substitution,32836,74.71,26.00,26.36,-0.36,After
REGRESSION.HCC1395_tumor.L008,-139,Cycle,Base Insertion,32390,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-139,Cycle,Base Deletion,32390,1.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-14,Cycle,Base Substitution,38544,56.46,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L008,-14,Cycle,Base Insertion,38544,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-14,Cycle,Base Deletion,38544,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-140,Cycle,Base Substitution,32674,68.64,27.00,26.13,0.87,After
REGRESSION.HCC1395_tumor.L008,-140,Cycle,Base Insertion,32168,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-140,Cycle,Base Deletion,32168,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-141,Cycle,Base Substitution,32613,62.36,27.00,26.28,0.72,After
REGRESSION.HCC1395_tumor.L008,-141,Cycle,Base Insertion,32089,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-141,Cycle,Base Deletion,32089,1.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-142,Cycle,Base Substitution,32409,64.54,27.00,26.06,0.94,After
REGRESSION.HCC1395_tumor.L008,-142,Cycle,Base Insertion,31783,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-142,Cycle,Base Deletion,31783,1.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-143,Cycle,Base Substitution,32346,63.46,27.00,26.37,0.63,After
REGRESSION.HCC1395_tumor.L008,-143,Cycle,Base Insertion,31669,0.00,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-143,Cycle,Base Deletion,31669,1.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-144,Cycle,Base Substitution,32232,52.14,27.00,26.15,0.85,After
REGRESSION.HCC1395_tumor.L008,-144,Cycle,Base Insertion,31499,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-144,Cycle,Base Deletion,31499,0.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-145,Cycle,Base Substitution,32085,53.03,27.00,26.21,0.79,After
REGRESSION.HCC1395_tumor.L008,-145,Cycle,Base Insertion,24717,0.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-145,Cycle,Base Deletion,24717,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-146,Cycle,Base Substitution,31870,25.34,28.00,26.39,1.61,After
REGRESSION.HCC1395_tumor.L008,-146,Cycle,Base Insertion,24646,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-146,Cycle,Base Deletion,24646,0.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-147,Cycle,Base Substitution,31689,20.08,26.00,22.33,3.67,After
REGRESSION.HCC1395_tumor.L008,-148,Cycle,Base Substitution,31442,19.97,24.00,16.05,7.95,After
REGRESSION.HCC1395_tumor.L008,-149,Cycle,Base Substitution,19627,18.08,22.00,14.19,7.81,After
REGRESSION.HCC1395_tumor.L008,-15,Cycle,Base Substitution,38805,41.89,29.00,28.05,0.95,After
REGRESSION.HCC1395_tumor.L008,-15,Cycle,Base Insertion,38805,1.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-15,Cycle,Base Deletion,38805,3.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-150,Cycle,Base Substitution,6945,12.09,27.00,26.65,0.35,After
REGRESSION.HCC1395_tumor.L008,-16,Cycle,Base Substitution,38739,57.12,28.00,27.63,0.37,After
REGRESSION.HCC1395_tumor.L008,-16,Cycle,Base Insertion,38739,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-16,Cycle,Base Deletion,38739,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-17,Cycle,Base Substitution,38601,56.48,28.00,27.38,0.62,After
REGRESSION.HCC1395_tumor.L008,-17,Cycle,Base Insertion,38601,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-17,Cycle,Base Deletion,38601,4.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-18,Cycle,Base Substitution,38626,47.25,28.00,27.82,0.18,After
REGRESSION.HCC1395_tumor.L008,-18,Cycle,Base Insertion,38626,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-18,Cycle,Base Deletion,38626,4.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-19,Cycle,Base Substitution,38591,63.86,28.00,27.51,0.49,After
REGRESSION.HCC1395_tumor.L008,-19,Cycle,Base Insertion,38591,3.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-19,Cycle,Base Deletion,38591,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-2,Cycle,Base Substitution,38916,107.88,26.00,25.51,0.49,After
REGRESSION.HCC1395_tumor.L008,-20,Cycle,Base Substitution,38616,57.95,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L008,-20,Cycle,Base Insertion,38616,2.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-20,Cycle,Base Deletion,38616,4.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-21,Cycle,Base Substitution,38454,39.64,29.00,27.74,1.26,After
REGRESSION.HCC1395_tumor.L008,-21,Cycle,Base Insertion,38454,3.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-21,Cycle,Base Deletion,38454,3.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-22,Cycle,Base Substitution,38634,60.16,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L008,-22,Cycle,Base Insertion,38634,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-22,Cycle,Base Deletion,38634,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-23,Cycle,Base Substitution,38588,58.78,28.00,27.54,0.46,After
REGRESSION.HCC1395_tumor.L008,-23,Cycle,Base Insertion,38588,2.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-23,Cycle,Base Deletion,38588,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-24,Cycle,Base Substitution,38553,50.75,28.00,27.69,0.31,After
REGRESSION.HCC1395_tumor.L008,-24,Cycle,Base Insertion,38553,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-24,Cycle,Base Deletion,38553,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-25,Cycle,Base Substitution,38529,54.02,28.00,27.86,0.14,After
REGRESSION.HCC1395_tumor.L008,-25,Cycle,Base Insertion,38529,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-25,Cycle,Base Deletion,38529,2.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-26,Cycle,Base Substitution,38538,63.12,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L008,-26,Cycle,Base Insertion,38538,4.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-26,Cycle,Base Deletion,38538,3.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-27,Cycle,Base Substitution,38572,52.32,28.00,26.54,1.46,After
REGRESSION.HCC1395_tumor.L008,-27,Cycle,Base Insertion,38572,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-27,Cycle,Base Deletion,38572,3.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-28,Cycle,Base Substitution,38410,61.57,28.00,27.04,0.96,After
REGRESSION.HCC1395_tumor.L008,-28,Cycle,Base Insertion,38409,3.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-28,Cycle,Base Deletion,38409,4.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-29,Cycle,Base Substitution,38581,58.06,28.00,26.44,1.56,After
REGRESSION.HCC1395_tumor.L008,-29,Cycle,Base Insertion,38578,3.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-29,Cycle,Base Deletion,38578,4.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-3,Cycle,Base Substitution,38898,129.51,25.00,26.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,-30,Cycle,Base Substitution,38515,57.48,28.00,26.70,1.30,After
REGRESSION.HCC1395_tumor.L008,-30,Cycle,Base Insertion,38511,2.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-30,Cycle,Base Deletion,38511,5.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-31,Cycle,Base Substitution,38451,74.48,27.00,26.41,0.59,After
REGRESSION.HCC1395_tumor.L008,-31,Cycle,Base Insertion,38444,3.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-31,Cycle,Base Deletion,38444,5.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-32,Cycle,Base Substitution,38419,42.26,29.00,27.17,1.83,After
REGRESSION.HCC1395_tumor.L008,-32,Cycle,Base Insertion,38412,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-32,Cycle,Base Deletion,38412,4.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-33,Cycle,Base Substitution,38487,62.90,27.00,26.77,0.23,After
REGRESSION.HCC1395_tumor.L008,-33,Cycle,Base Insertion,38482,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-33,Cycle,Base Deletion,38482,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-34,Cycle,Base Substitution,38472,50.83,28.00,26.82,1.18,After
REGRESSION.HCC1395_tumor.L008,-34,Cycle,Base Insertion,38465,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-34,Cycle,Base Deletion,38465,3.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-35,Cycle,Base Substitution,38423,52.58,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L008,-35,Cycle,Base Insertion,38420,2.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-35,Cycle,Base Deletion,38420,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-36,Cycle,Base Substitution,38591,68.42,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L008,-36,Cycle,Base Insertion,38586,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-36,Cycle,Base Deletion,38586,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-37,Cycle,Base Substitution,38378,53.57,28.00,27.12,0.88,After
REGRESSION.HCC1395_tumor.L008,-37,Cycle,Base Insertion,38374,1.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-37,Cycle,Base Deletion,38374,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-38,Cycle,Base Substitution,38364,64.78,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L008,-38,Cycle,Base Insertion,38361,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-38,Cycle,Base Deletion,38361,5.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-39,Cycle,Base Substitution,38337,63.75,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L008,-39,Cycle,Base Insertion,38335,2.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-39,Cycle,Base Deletion,38335,4.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-4,Cycle,Base Substitution,38752,81.88,27.00,26.16,0.84,After
REGRESSION.HCC1395_tumor.L008,-40,Cycle,Base Substitution,38330,55.34,28.00,26.95,1.05,After
REGRESSION.HCC1395_tumor.L008,-40,Cycle,Base Insertion,38329,2.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-40,Cycle,Base Deletion,38329,5.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-41,Cycle,Base Substitution,38393,52.73,28.00,26.80,1.20,After
REGRESSION.HCC1395_tumor.L008,-41,Cycle,Base Insertion,38391,3.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-41,Cycle,Base Deletion,38391,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-42,Cycle,Base Substitution,38315,47.76,28.00,26.87,1.13,After
REGRESSION.HCC1395_tumor.L008,-42,Cycle,Base Insertion,38312,1.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-42,Cycle,Base Deletion,38312,4.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-43,Cycle,Base Substitution,38393,57.61,28.00,26.68,1.32,After
REGRESSION.HCC1395_tumor.L008,-43,Cycle,Base Insertion,38390,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-43,Cycle,Base Deletion,38390,4.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-44,Cycle,Base Substitution,38432,69.03,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L008,-44,Cycle,Base Insertion,38423,1.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-44,Cycle,Base Deletion,38423,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-45,Cycle,Base Substitution,38281,44.59,28.00,26.74,1.26,After
REGRESSION.HCC1395_tumor.L008,-45,Cycle,Base Insertion,38266,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-45,Cycle,Base Deletion,38266,3.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-46,Cycle,Base Substitution,38319,63.26,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L008,-46,Cycle,Base Insertion,38306,2.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-46,Cycle,Base Deletion,38306,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-47,Cycle,Base Substitution,38265,68.26,27.00,27.08,-0.08,After
REGRESSION.HCC1395_tumor.L008,-47,Cycle,Base Insertion,38252,2.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-47,Cycle,Base Deletion,38252,4.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-48,Cycle,Base Substitution,38342,66.28,27.00,26.84,0.16,After
REGRESSION.HCC1395_tumor.L008,-48,Cycle,Base Insertion,38334,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-48,Cycle,Base Deletion,38334,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-49,Cycle,Base Substitution,38267,69.90,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L008,-49,Cycle,Base Insertion,38258,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-49,Cycle,Base Deletion,38258,3.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-5,Cycle,Base Substitution,38792,67.37,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L008,-5,Cycle,Base Insertion,38792,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-5,Cycle,Base Deletion,38792,1.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-50,Cycle,Base Substitution,38342,57.88,28.00,26.97,1.03,After
REGRESSION.HCC1395_tumor.L008,-50,Cycle,Base Insertion,38329,3.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-50,Cycle,Base Deletion,38329,4.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-51,Cycle,Base Substitution,38217,50.75,28.00,27.11,0.89,After
REGRESSION.HCC1395_tumor.L008,-51,Cycle,Base Insertion,38199,0.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-51,Cycle,Base Deletion,38199,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-52,Cycle,Base Substitution,38312,60.62,28.00,27.18,0.82,After
REGRESSION.HCC1395_tumor.L008,-52,Cycle,Base Insertion,38282,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-52,Cycle,Base Deletion,38282,4.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-53,Cycle,Base Substitution,38277,73.96,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L008,-53,Cycle,Base Insertion,38247,1.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-53,Cycle,Base Deletion,38247,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-54,Cycle,Base Substitution,38268,60.80,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L008,-54,Cycle,Base Insertion,38227,1.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-54,Cycle,Base Deletion,38227,3.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-55,Cycle,Base Substitution,38160,85.92,26.00,26.71,-0.71,After
REGRESSION.HCC1395_tumor.L008,-55,Cycle,Base Insertion,38117,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-55,Cycle,Base Deletion,38117,4.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-56,Cycle,Base Substitution,38268,66.14,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L008,-56,Cycle,Base Insertion,38228,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-56,Cycle,Base Deletion,38228,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-57,Cycle,Base Substitution,38113,51.50,28.00,26.84,1.16,After
REGRESSION.HCC1395_tumor.L008,-57,Cycle,Base Insertion,38069,2.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-57,Cycle,Base Deletion,38069,4.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-58,Cycle,Base Substitution,38161,65.55,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L008,-58,Cycle,Base Insertion,38112,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-58,Cycle,Base Deletion,38112,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-59,Cycle,Base Substitution,38234,80.47,27.00,26.91,0.09,After
REGRESSION.HCC1395_tumor.L008,-59,Cycle,Base Insertion,38190,2.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-59,Cycle,Base Deletion,38190,5.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-6,Cycle,Base Substitution,38781,86.58,26.00,26.51,-0.51,After
REGRESSION.HCC1395_tumor.L008,-6,Cycle,Base Insertion,38781,0.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-6,Cycle,Base Deletion,38781,3.01,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-60,Cycle,Base Substitution,38269,78.14,27.00,27.02,-0.02,After
REGRESSION.HCC1395_tumor.L008,-60,Cycle,Base Insertion,38214,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-60,Cycle,Base Deletion,38214,5.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-61,Cycle,Base Substitution,38164,61.23,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L008,-61,Cycle,Base Insertion,38099,2.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-61,Cycle,Base Deletion,38099,5.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-62,Cycle,Base Substitution,38232,60.02,27.00,26.82,0.18,After
REGRESSION.HCC1395_tumor.L008,-62,Cycle,Base Insertion,38164,3.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-62,Cycle,Base Deletion,38164,5.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-63,Cycle,Base Substitution,38123,80.23,27.00,26.20,0.80,After
REGRESSION.HCC1395_tumor.L008,-63,Cycle,Base Insertion,38038,2.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-63,Cycle,Base Deletion,38038,5.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-64,Cycle,Base Substitution,38030,65.42,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L008,-64,Cycle,Base Insertion,37944,2.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-64,Cycle,Base Deletion,37944,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-65,Cycle,Base Substitution,37955,78.75,27.00,26.92,0.08,After
REGRESSION.HCC1395_tumor.L008,-65,Cycle,Base Insertion,37860,1.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-65,Cycle,Base Deletion,37860,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-66,Cycle,Base Substitution,37971,53.68,28.00,27.12,0.88,After
REGRESSION.HCC1395_tumor.L008,-66,Cycle,Base Insertion,37867,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-66,Cycle,Base Deletion,37867,3.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-67,Cycle,Base Substitution,37985,52.05,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L008,-67,Cycle,Base Insertion,37880,1.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-67,Cycle,Base Deletion,37880,3.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-68,Cycle,Base Substitution,38093,76.07,27.00,26.78,0.22,After
REGRESSION.HCC1395_tumor.L008,-68,Cycle,Base Insertion,37987,1.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-68,Cycle,Base Deletion,37987,3.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-69,Cycle,Base Substitution,38033,64.75,27.00,26.69,0.31,After
REGRESSION.HCC1395_tumor.L008,-69,Cycle,Base Insertion,37934,2.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-69,Cycle,Base Deletion,37934,4.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-7,Cycle,Base Substitution,38659,57.73,28.00,26.95,1.05,After
REGRESSION.HCC1395_tumor.L008,-7,Cycle,Base Insertion,38659,0.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-7,Cycle,Base Deletion,38659,2.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-70,Cycle,Base Substitution,38018,68.11,27.00,27.20,-0.20,After
REGRESSION.HCC1395_tumor.L008,-70,Cycle,Base Insertion,37917,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-70,Cycle,Base Deletion,37917,4.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-71,Cycle,Base Substitution,37775,55.87,28.00,26.73,1.27,After
REGRESSION.HCC1395_tumor.L008,-71,Cycle,Base Insertion,37666,0.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-71,Cycle,Base Deletion,37666,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-72,Cycle,Base Substitution,37745,69.29,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L008,-72,Cycle,Base Insertion,37623,1.71,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-72,Cycle,Base Deletion,37623,5.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-73,Cycle,Base Substitution,37889,80.06,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L008,-73,Cycle,Base Insertion,37748,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-73,Cycle,Base Deletion,37748,4.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-74,Cycle,Base Substitution,37803,61.99,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L008,-74,Cycle,Base Insertion,37664,1.05,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-74,Cycle,Base Deletion,37664,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-75,Cycle,Base Substitution,37670,63.50,28.00,27.22,0.78,After
REGRESSION.HCC1395_tumor.L008,-75,Cycle,Base Insertion,37520,1.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-75,Cycle,Base Deletion,37520,4.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-76,Cycle,Base Substitution,37623,60.16,28.00,27.12,0.88,After
REGRESSION.HCC1395_tumor.L008,-76,Cycle,Base Insertion,37455,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-76,Cycle,Base Deletion,37455,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-77,Cycle,Base Substitution,37508,56.86,28.00,26.64,1.36,After
REGRESSION.HCC1395_tumor.L008,-77,Cycle,Base Insertion,37346,1.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-77,Cycle,Base Deletion,37346,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-78,Cycle,Base Substitution,37638,71.81,27.00,26.71,0.29,After
REGRESSION.HCC1395_tumor.L008,-78,Cycle,Base Insertion,37471,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-78,Cycle,Base Deletion,37471,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-79,Cycle,Base Substitution,37496,79.18,27.00,26.60,0.40,After
REGRESSION.HCC1395_tumor.L008,-79,Cycle,Base Insertion,37312,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-79,Cycle,Base Deletion,37312,4.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-8,Cycle,Base Substitution,38732,61.64,28.00,27.19,0.81,After
REGRESSION.HCC1395_tumor.L008,-8,Cycle,Base Insertion,38732,0.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-8,Cycle,Base Deletion,38732,3.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-80,Cycle,Base Substitution,37441,64.37,28.00,27.13,0.87,After
REGRESSION.HCC1395_tumor.L008,-80,Cycle,Base Insertion,37254,0.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-80,Cycle,Base Deletion,37254,4.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-81,Cycle,Base Substitution,37474,68.26,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L008,-81,Cycle,Base Insertion,37275,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-81,Cycle,Base Deletion,37275,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-82,Cycle,Base Substitution,37405,79.46,27.00,26.64,0.36,After
REGRESSION.HCC1395_tumor.L008,-82,Cycle,Base Insertion,37209,0.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-82,Cycle,Base Deletion,37209,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-83,Cycle,Base Substitution,37357,76.11,27.00,26.18,0.82,After
REGRESSION.HCC1395_tumor.L008,-83,Cycle,Base Insertion,37150,0.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-83,Cycle,Base Deletion,37150,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-84,Cycle,Base Substitution,37209,69.00,27.00,26.76,0.24,After
REGRESSION.HCC1395_tumor.L008,-84,Cycle,Base Insertion,37001,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-84,Cycle,Base Deletion,37001,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-85,Cycle,Base Substitution,37204,80.92,27.00,26.39,0.61,After
REGRESSION.HCC1395_tumor.L008,-85,Cycle,Base Insertion,37015,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-85,Cycle,Base Deletion,37015,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-86,Cycle,Base Substitution,37249,68.95,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L008,-86,Cycle,Base Insertion,37038,0.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-86,Cycle,Base Deletion,37038,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-87,Cycle,Base Substitution,37160,80.50,27.00,26.47,0.53,After
REGRESSION.HCC1395_tumor.L008,-87,Cycle,Base Insertion,36960,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-87,Cycle,Base Deletion,36960,2.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-88,Cycle,Base Substitution,37138,73.78,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L008,-88,Cycle,Base Insertion,36926,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-88,Cycle,Base Deletion,36926,3.29,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-89,Cycle,Base Substitution,37080,67.35,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L008,-89,Cycle,Base Insertion,36861,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-89,Cycle,Base Deletion,36861,3.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-9,Cycle,Base Substitution,38787,73.75,27.00,27.26,-0.26,After
REGRESSION.HCC1395_tumor.L008,-9,Cycle,Base Insertion,38787,0.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-9,Cycle,Base Deletion,38787,3.48,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-90,Cycle,Base Substitution,37027,79.42,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L008,-90,Cycle,Base Insertion,36800,0.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-90,Cycle,Base Deletion,36800,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-91,Cycle,Base Substitution,37026,77.34,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L008,-91,Cycle,Base Insertion,36793,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-91,Cycle,Base Deletion,36793,3.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-92,Cycle,Base Substitution,36870,91.69,26.00,26.51,-0.51,After
REGRESSION.HCC1395_tumor.L008,-92,Cycle,Base Insertion,36630,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-92,Cycle,Base Deletion,36630,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-93,Cycle,Base Substitution,36823,83.78,26.00,25.88,0.12,After
REGRESSION.HCC1395_tumor.L008,-93,Cycle,Base Insertion,36557,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-93,Cycle,Base Deletion,36557,3.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-94,Cycle,Base Substitution,36658,71.46,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L008,-94,Cycle,Base Insertion,36388,0.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-94,Cycle,Base Deletion,36388,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-95,Cycle,Base Substitution,36781,71.74,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L008,-95,Cycle,Base Insertion,36490,2.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-95,Cycle,Base Deletion,36490,3.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-96,Cycle,Base Substitution,36636,86.06,26.00,25.99,0.01,After
REGRESSION.HCC1395_tumor.L008,-96,Cycle,Base Insertion,36351,0.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-96,Cycle,Base Deletion,36351,2.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-97,Cycle,Base Substitution,36583,81.86,26.00,26.62,-0.62,After
REGRESSION.HCC1395_tumor.L008,-97,Cycle,Base Insertion,36293,1.65,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-97,Cycle,Base Deletion,36293,3.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-98,Cycle,Base Substitution,36414,78.79,27.00,26.42,0.58,After
REGRESSION.HCC1395_tumor.L008,-98,Cycle,Base Insertion,36145,1.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-98,Cycle,Base Deletion,36145,3.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-99,Cycle,Base Substitution,36465,73.62,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L008,-99,Cycle,Base Insertion,36199,2.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,-99,Cycle,Base Deletion,36199,3.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,1,Cycle,Base Substitution,38372,84.09,26.00,25.77,0.23,After
REGRESSION.HCC1395_tumor.L008,10,Cycle,Base Substitution,38748,43.24,29.00,27.58,1.42,After
REGRESSION.HCC1395_tumor.L008,10,Cycle,Base Insertion,38748,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,10,Cycle,Base Deletion,38748,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,100,Cycle,Base Substitution,36276,73.71,27.00,26.81,0.19,After
REGRESSION.HCC1395_tumor.L008,100,Cycle,Base Insertion,36011,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,100,Cycle,Base Deletion,36011,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,101,Cycle,Base Substitution,36321,48.31,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L008,101,Cycle,Base Insertion,36072,3.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,101,Cycle,Base Deletion,36072,3.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,102,Cycle,Base Substitution,36222,51.40,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L008,102,Cycle,Base Insertion,35955,2.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,102,Cycle,Base Deletion,35955,3.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,103,Cycle,Base Substitution,36161,66.94,27.00,26.80,0.20,After
REGRESSION.HCC1395_tumor.L008,103,Cycle,Base Insertion,35871,2.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,103,Cycle,Base Deletion,35871,4.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,104,Cycle,Base Substitution,36098,54.47,28.00,26.74,1.26,After
REGRESSION.HCC1395_tumor.L008,104,Cycle,Base Insertion,35811,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,104,Cycle,Base Deletion,35811,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,105,Cycle,Base Substitution,36032,61.84,27.00,26.89,0.11,After
REGRESSION.HCC1395_tumor.L008,105,Cycle,Base Insertion,35732,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,105,Cycle,Base Deletion,35732,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,106,Cycle,Base Substitution,36036,63.45,28.00,27.07,0.93,After
REGRESSION.HCC1395_tumor.L008,106,Cycle,Base Insertion,35751,1.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,106,Cycle,Base Deletion,35751,3.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,107,Cycle,Base Substitution,35799,65.29,27.00,27.17,-0.17,After
REGRESSION.HCC1395_tumor.L008,107,Cycle,Base Insertion,35511,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,107,Cycle,Base Deletion,35511,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,108,Cycle,Base Substitution,35741,77.13,27.00,26.74,0.26,After
REGRESSION.HCC1395_tumor.L008,108,Cycle,Base Insertion,35451,2.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,108,Cycle,Base Deletion,35451,2.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,109,Cycle,Base Substitution,35776,48.20,28.00,27.19,0.81,After
REGRESSION.HCC1395_tumor.L008,109,Cycle,Base Insertion,35462,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,109,Cycle,Base Deletion,35462,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,11,Cycle,Base Substitution,38747,39.82,29.00,27.36,1.64,After
REGRESSION.HCC1395_tumor.L008,11,Cycle,Base Insertion,38747,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,11,Cycle,Base Deletion,38747,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,110,Cycle,Base Substitution,35734,71.69,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L008,110,Cycle,Base Insertion,35380,1.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,110,Cycle,Base Deletion,35380,3.82,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,111,Cycle,Base Substitution,35746,72.37,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L008,111,Cycle,Base Insertion,35374,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,111,Cycle,Base Deletion,35374,4.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,112,Cycle,Base Substitution,35582,68.59,27.00,26.90,0.10,After
REGRESSION.HCC1395_tumor.L008,112,Cycle,Base Insertion,35207,1.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,112,Cycle,Base Deletion,35207,4.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,113,Cycle,Base Substitution,35640,66.96,27.00,26.79,0.21,After
REGRESSION.HCC1395_tumor.L008,113,Cycle,Base Insertion,35265,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,113,Cycle,Base Deletion,35265,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,114,Cycle,Base Substitution,35407,59.29,27.00,26.86,0.14,After
REGRESSION.HCC1395_tumor.L008,114,Cycle,Base Insertion,35044,1.55,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,114,Cycle,Base Deletion,35044,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,115,Cycle,Base Substitution,35247,67.08,27.00,26.63,0.37,After
REGRESSION.HCC1395_tumor.L008,115,Cycle,Base Insertion,34864,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,115,Cycle,Base Deletion,34864,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,116,Cycle,Base Substitution,35169,77.73,26.00,26.69,-0.69,After
REGRESSION.HCC1395_tumor.L008,116,Cycle,Base Insertion,34770,1.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,116,Cycle,Base Deletion,34770,3.38,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,117,Cycle,Base Substitution,34990,73.31,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L008,117,Cycle,Base Insertion,34594,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,117,Cycle,Base Deletion,34594,3.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,118,Cycle,Base Substitution,34843,55.93,27.00,26.68,0.32,After
REGRESSION.HCC1395_tumor.L008,118,Cycle,Base Insertion,34482,2.15,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,118,Cycle,Base Deletion,34482,3.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,119,Cycle,Base Substitution,34977,75.76,27.00,26.70,0.30,After
REGRESSION.HCC1395_tumor.L008,119,Cycle,Base Insertion,34609,0.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,119,Cycle,Base Deletion,34609,2.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,12,Cycle,Base Substitution,38741,42.49,29.00,27.77,1.23,After
REGRESSION.HCC1395_tumor.L008,12,Cycle,Base Insertion,38741,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,12,Cycle,Base Deletion,38741,3.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,120,Cycle,Base Substitution,34757,60.65,27.00,26.85,0.15,After
REGRESSION.HCC1395_tumor.L008,120,Cycle,Base Insertion,34403,0.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,120,Cycle,Base Deletion,34403,4.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,121,Cycle,Base Substitution,34831,83.90,26.00,26.74,-0.74,After
REGRESSION.HCC1395_tumor.L008,121,Cycle,Base Insertion,34446,0.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,121,Cycle,Base Deletion,34446,4.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,122,Cycle,Base Substitution,34440,60.28,27.00,26.56,0.44,After
REGRESSION.HCC1395_tumor.L008,122,Cycle,Base Insertion,34044,0.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,122,Cycle,Base Deletion,34044,3.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,123,Cycle,Base Substitution,34467,69.40,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L008,123,Cycle,Base Insertion,34079,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,123,Cycle,Base Deletion,34079,3.36,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,124,Cycle,Base Substitution,34420,77.91,26.00,26.55,-0.55,After
REGRESSION.HCC1395_tumor.L008,124,Cycle,Base Insertion,34029,0.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,124,Cycle,Base Deletion,34029,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,125,Cycle,Base Substitution,34387,72.34,27.00,26.58,0.42,After
REGRESSION.HCC1395_tumor.L008,125,Cycle,Base Insertion,34002,0.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,125,Cycle,Base Deletion,34002,2.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,126,Cycle,Base Substitution,34250,82.92,26.00,26.60,-0.60,After
REGRESSION.HCC1395_tumor.L008,126,Cycle,Base Insertion,33879,0.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,126,Cycle,Base Deletion,33879,2.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,127,Cycle,Base Substitution,34132,62.21,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L008,127,Cycle,Base Insertion,33774,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,127,Cycle,Base Deletion,33774,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,128,Cycle,Base Substitution,33985,74.48,27.00,26.53,0.47,After
REGRESSION.HCC1395_tumor.L008,128,Cycle,Base Insertion,33624,0.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,128,Cycle,Base Deletion,33624,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,129,Cycle,Base Substitution,33951,58.79,27.00,26.61,0.39,After
REGRESSION.HCC1395_tumor.L008,129,Cycle,Base Insertion,33586,0.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,129,Cycle,Base Deletion,33586,3.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,13,Cycle,Base Substitution,38687,52.32,28.00,27.25,0.75,After
REGRESSION.HCC1395_tumor.L008,13,Cycle,Base Insertion,38687,1.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,13,Cycle,Base Deletion,38687,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,130,Cycle,Base Substitution,33806,69.25,27.00,26.54,0.46,After
REGRESSION.HCC1395_tumor.L008,130,Cycle,Base Insertion,33427,0.79,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,130,Cycle,Base Deletion,33427,3.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,131,Cycle,Base Substitution,33886,76.68,26.00,26.60,-0.60,After
REGRESSION.HCC1395_tumor.L008,131,Cycle,Base Insertion,33506,0.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,131,Cycle,Base Deletion,33506,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,132,Cycle,Base Substitution,33744,78.26,26.00,26.39,-0.39,After
REGRESSION.HCC1395_tumor.L008,132,Cycle,Base Insertion,33341,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,132,Cycle,Base Deletion,33341,2.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,133,Cycle,Base Substitution,33540,80.20,26.00,26.64,-0.64,After
REGRESSION.HCC1395_tumor.L008,133,Cycle,Base Insertion,33165,0.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,133,Cycle,Base Deletion,33165,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,134,Cycle,Base Substitution,33417,65.25,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L008,134,Cycle,Base Insertion,33021,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,134,Cycle,Base Deletion,33021,3.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,135,Cycle,Base Substitution,33356,61.25,27.00,26.33,0.67,After
REGRESSION.HCC1395_tumor.L008,135,Cycle,Base Insertion,32928,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,135,Cycle,Base Deletion,32928,2.31,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,136,Cycle,Base Substitution,33197,70.75,27.00,26.72,0.28,After
REGRESSION.HCC1395_tumor.L008,136,Cycle,Base Insertion,32791,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,136,Cycle,Base Deletion,32791,2.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,137,Cycle,Base Substitution,33194,56.47,27.00,26.49,0.51,After
REGRESSION.HCC1395_tumor.L008,137,Cycle,Base Insertion,32779,0.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,137,Cycle,Base Deletion,32779,2.72,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,138,Cycle,Base Substitution,33047,64.36,27.00,26.57,0.43,After
REGRESSION.HCC1395_tumor.L008,138,Cycle,Base Insertion,32645,0.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,138,Cycle,Base Deletion,32645,1.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,139,Cycle,Base Substitution,33025,67.73,27.00,26.55,0.45,After
REGRESSION.HCC1395_tumor.L008,139,Cycle,Base Insertion,32613,1.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,139,Cycle,Base Deletion,32613,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,14,Cycle,Base Substitution,38592,34.10,29.00,28.16,0.84,After
REGRESSION.HCC1395_tumor.L008,14,Cycle,Base Insertion,38592,3.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,14,Cycle,Base Deletion,38592,2.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,140,Cycle,Base Substitution,32865,65.61,27.00,26.31,0.69,After
REGRESSION.HCC1395_tumor.L008,140,Cycle,Base Insertion,32450,0.57,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,140,Cycle,Base Deletion,32450,1.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,141,Cycle,Base Substitution,32891,59.83,27.00,26.67,0.33,After
REGRESSION.HCC1395_tumor.L008,141,Cycle,Base Insertion,32461,0.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,141,Cycle,Base Deletion,32461,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,142,Cycle,Base Substitution,32736,76.37,26.00,26.64,-0.64,After
REGRESSION.HCC1395_tumor.L008,142,Cycle,Base Insertion,32287,0.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,142,Cycle,Base Deletion,32287,1.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,143,Cycle,Base Substitution,32625,76.80,26.00,26.32,-0.32,After
REGRESSION.HCC1395_tumor.L008,143,Cycle,Base Insertion,32165,0.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,143,Cycle,Base Deletion,32165,1.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,144,Cycle,Base Substitution,32441,74.95,26.00,26.56,-0.56,After
REGRESSION.HCC1395_tumor.L008,144,Cycle,Base Insertion,31956,0.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,144,Cycle,Base Deletion,31956,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,145,Cycle,Base Substitution,32432,71.89,26.00,26.44,-0.44,After
REGRESSION.HCC1395_tumor.L008,145,Cycle,Base Insertion,31931,0.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,145,Cycle,Base Deletion,31931,0.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,146,Cycle,Base Substitution,32326,66.70,27.00,26.66,0.34,After
REGRESSION.HCC1395_tumor.L008,146,Cycle,Base Insertion,31857,0.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,146,Cycle,Base Deletion,31857,0.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,147,Cycle,Base Substitution,32048,72.19,26.00,26.51,-0.51,After
REGRESSION.HCC1395_tumor.L008,148,Cycle,Base Substitution,31936,90.88,26.00,26.58,-0.58,After
REGRESSION.HCC1395_tumor.L008,149,Cycle,Base Substitution,31814,81.24,26.00,26.42,-0.42,After
REGRESSION.HCC1395_tumor.L008,15,Cycle,Base Substitution,38693,45.97,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L008,15,Cycle,Base Insertion,38693,3.97,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,15,Cycle,Base Deletion,38693,2.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,150,Cycle,Base Substitution,31769,83.20,26.00,26.55,-0.55,After
REGRESSION.HCC1395_tumor.L008,16,Cycle,Base Substitution,38523,25.81,30.00,28.68,1.32,After
REGRESSION.HCC1395_tumor.L008,16,Cycle,Base Insertion,38523,2.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,16,Cycle,Base Deletion,38523,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,17,Cycle,Base Substitution,38582,40.06,29.00,28.50,0.50,After
REGRESSION.HCC1395_tumor.L008,17,Cycle,Base Insertion,38582,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,17,Cycle,Base Deletion,38582,3.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,18,Cycle,Base Substitution,38599,23.64,30.00,28.92,1.08,After
REGRESSION.HCC1395_tumor.L008,18,Cycle,Base Insertion,38598,2.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,18,Cycle,Base Deletion,38598,4.28,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,19,Cycle,Base Substitution,38617,31.04,30.00,28.71,1.29,After
REGRESSION.HCC1395_tumor.L008,19,Cycle,Base Insertion,38616,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,19,Cycle,Base Deletion,38616,3.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,2,Cycle,Base Substitution,38826,75.82,27.00,27.59,-0.59,After
REGRESSION.HCC1395_tumor.L008,20,Cycle,Base Substitution,38575,38.51,29.00,28.60,0.40,After
REGRESSION.HCC1395_tumor.L008,20,Cycle,Base Insertion,38574,2.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,20,Cycle,Base Deletion,38574,3.24,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,21,Cycle,Base Substitution,38518,27.72,30.00,28.53,1.47,After
REGRESSION.HCC1395_tumor.L008,21,Cycle,Base Insertion,38517,2.66,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,21,Cycle,Base Deletion,38517,4.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,22,Cycle,Base Substitution,38695,21.78,30.00,28.75,1.25,After
REGRESSION.HCC1395_tumor.L008,22,Cycle,Base Insertion,38695,3.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,22,Cycle,Base Deletion,38695,3.23,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,23,Cycle,Base Substitution,38458,29.91,30.00,28.59,1.41,After
REGRESSION.HCC1395_tumor.L008,23,Cycle,Base Insertion,38458,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,23,Cycle,Base Deletion,38458,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,24,Cycle,Base Substitution,38563,30.56,30.00,28.76,1.24,After
REGRESSION.HCC1395_tumor.L008,24,Cycle,Base Insertion,38562,1.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,24,Cycle,Base Deletion,38562,4.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,25,Cycle,Base Substitution,38469,34.25,29.00,28.43,0.57,After
REGRESSION.HCC1395_tumor.L008,25,Cycle,Base Insertion,38468,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,25,Cycle,Base Deletion,38468,3.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,26,Cycle,Base Substitution,38490,50.02,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L008,26,Cycle,Base Insertion,38489,3.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,26,Cycle,Base Deletion,38489,3.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,27,Cycle,Base Substitution,38587,35.98,29.00,27.56,1.44,After
REGRESSION.HCC1395_tumor.L008,27,Cycle,Base Insertion,38583,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,27,Cycle,Base Deletion,38583,4.96,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,28,Cycle,Base Substitution,38551,42.05,29.00,28.20,0.80,After
REGRESSION.HCC1395_tumor.L008,28,Cycle,Base Insertion,38548,1.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,28,Cycle,Base Deletion,38548,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,29,Cycle,Base Substitution,38533,34.91,29.00,27.79,1.21,After
REGRESSION.HCC1395_tumor.L008,29,Cycle,Base Insertion,38528,3.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,29,Cycle,Base Deletion,38528,4.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,3,Cycle,Base Substitution,38862,105.45,26.00,27.21,-1.21,After
REGRESSION.HCC1395_tumor.L008,30,Cycle,Base Substitution,38581,44.55,28.00,27.87,0.13,After
REGRESSION.HCC1395_tumor.L008,30,Cycle,Base Insertion,38576,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,30,Cycle,Base Deletion,38576,5.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,31,Cycle,Base Substitution,38380,32.42,29.00,27.87,1.13,After
REGRESSION.HCC1395_tumor.L008,31,Cycle,Base Insertion,38377,1.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,31,Cycle,Base Deletion,38377,5.34,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,32,Cycle,Base Substitution,38514,58.53,28.00,27.80,0.20,After
REGRESSION.HCC1395_tumor.L008,32,Cycle,Base Insertion,38509,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,32,Cycle,Base Deletion,38509,5.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,33,Cycle,Base Substitution,38485,33.48,29.00,27.71,1.29,After
REGRESSION.HCC1395_tumor.L008,33,Cycle,Base Insertion,38483,1.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,33,Cycle,Base Deletion,38483,4.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,34,Cycle,Base Substitution,38421,41.50,29.00,27.59,1.41,After
REGRESSION.HCC1395_tumor.L008,34,Cycle,Base Insertion,38416,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,34,Cycle,Base Deletion,38416,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,35,Cycle,Base Substitution,38473,45.09,28.00,27.81,0.19,After
REGRESSION.HCC1395_tumor.L008,35,Cycle,Base Insertion,38469,1.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,35,Cycle,Base Deletion,38469,4.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,36,Cycle,Base Substitution,38481,49.89,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L008,36,Cycle,Base Insertion,38479,1.62,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,36,Cycle,Base Deletion,38479,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,37,Cycle,Base Substitution,38363,37.72,29.00,27.92,1.08,After
REGRESSION.HCC1395_tumor.L008,37,Cycle,Base Insertion,38361,1.50,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,37,Cycle,Base Deletion,38361,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,38,Cycle,Base Substitution,38427,42.56,29.00,27.95,1.05,After
REGRESSION.HCC1395_tumor.L008,38,Cycle,Base Insertion,38422,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,38,Cycle,Base Deletion,38422,4.19,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,39,Cycle,Base Substitution,38443,47.18,28.00,27.65,0.35,After
REGRESSION.HCC1395_tumor.L008,39,Cycle,Base Insertion,38440,1.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,39,Cycle,Base Deletion,38440,4.51,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,4,Cycle,Base Substitution,38936,75.36,27.00,27.24,-0.24,After
REGRESSION.HCC1395_tumor.L008,40,Cycle,Base Substitution,38444,48.14,28.00,27.84,0.16,After
REGRESSION.HCC1395_tumor.L008,40,Cycle,Base Insertion,38441,1.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,40,Cycle,Base Deletion,38441,4.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,41,Cycle,Base Substitution,38461,46.89,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L008,41,Cycle,Base Insertion,38456,3.10,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,41,Cycle,Base Deletion,38456,4.70,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,42,Cycle,Base Substitution,38373,48.06,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L008,42,Cycle,Base Insertion,38372,2.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,42,Cycle,Base Deletion,38372,4.42,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,43,Cycle,Base Substitution,38454,35.60,29.00,28.25,0.75,After
REGRESSION.HCC1395_tumor.L008,43,Cycle,Base Insertion,38453,2.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,43,Cycle,Base Deletion,38453,4.74,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,44,Cycle,Base Substitution,38464,48.59,29.00,28.05,0.95,After
REGRESSION.HCC1395_tumor.L008,44,Cycle,Base Insertion,38460,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,44,Cycle,Base Deletion,38460,4.73,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,45,Cycle,Base Substitution,38370,43.05,29.00,28.25,0.75,After
REGRESSION.HCC1395_tumor.L008,45,Cycle,Base Insertion,38364,2.54,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,45,Cycle,Base Deletion,38364,4.76,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,46,Cycle,Base Substitution,38365,37.27,29.00,28.20,0.80,After
REGRESSION.HCC1395_tumor.L008,46,Cycle,Base Insertion,38355,2.99,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,46,Cycle,Base Deletion,38355,4.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,47,Cycle,Base Substitution,38290,45.87,28.00,27.70,0.30,After
REGRESSION.HCC1395_tumor.L008,47,Cycle,Base Insertion,38279,2.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,47,Cycle,Base Deletion,38279,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,48,Cycle,Base Substitution,38318,55.26,28.00,27.76,0.24,After
REGRESSION.HCC1395_tumor.L008,48,Cycle,Base Insertion,38311,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,48,Cycle,Base Deletion,38311,4.80,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,49,Cycle,Base Substitution,38367,49.08,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L008,49,Cycle,Base Insertion,38356,2.84,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,49,Cycle,Base Deletion,38356,4.78,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,5,Cycle,Base Substitution,38855,47.25,28.00,27.92,0.08,After
REGRESSION.HCC1395_tumor.L008,5,Cycle,Base Insertion,38855,0.85,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,5,Cycle,Base Deletion,38855,0.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,50,Cycle,Base Substitution,38364,46.49,28.00,27.79,0.21,After
REGRESSION.HCC1395_tumor.L008,50,Cycle,Base Insertion,38348,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,50,Cycle,Base Deletion,38348,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,51,Cycle,Base Substitution,38178,47.61,29.00,28.27,0.73,After
REGRESSION.HCC1395_tumor.L008,51,Cycle,Base Insertion,38155,1.69,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,51,Cycle,Base Deletion,38155,4.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,52,Cycle,Base Substitution,38258,42.36,29.00,27.78,1.22,After
REGRESSION.HCC1395_tumor.L008,52,Cycle,Base Insertion,38229,2.03,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,52,Cycle,Base Deletion,38229,4.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,53,Cycle,Base Substitution,38229,38.30,29.00,27.70,1.30,After
REGRESSION.HCC1395_tumor.L008,53,Cycle,Base Insertion,38202,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,53,Cycle,Base Deletion,38202,4.47,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,54,Cycle,Base Substitution,38244,52.53,28.00,27.27,0.73,After
REGRESSION.HCC1395_tumor.L008,54,Cycle,Base Insertion,38215,2.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,54,Cycle,Base Deletion,38215,4.30,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,55,Cycle,Base Substitution,38150,29.36,29.00,27.74,1.26,After
REGRESSION.HCC1395_tumor.L008,55,Cycle,Base Insertion,38113,2.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,55,Cycle,Base Deletion,38113,4.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,56,Cycle,Base Substitution,38346,40.98,29.00,27.61,1.39,After
REGRESSION.HCC1395_tumor.L008,56,Cycle,Base Insertion,38303,0.98,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,56,Cycle,Base Deletion,38303,4.95,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,57,Cycle,Base Substitution,38155,47.34,28.00,27.50,0.50,After
REGRESSION.HCC1395_tumor.L008,57,Cycle,Base Insertion,38114,0.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,57,Cycle,Base Deletion,38114,5.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,58,Cycle,Base Substitution,38261,43.46,29.00,27.62,1.38,After
REGRESSION.HCC1395_tumor.L008,58,Cycle,Base Insertion,38208,1.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,58,Cycle,Base Deletion,38208,4.09,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,59,Cycle,Base Substitution,38208,39.79,29.00,27.73,1.27,After
REGRESSION.HCC1395_tumor.L008,59,Cycle,Base Insertion,38163,0.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,59,Cycle,Base Deletion,38163,4.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,6,Cycle,Base Substitution,38798,47.72,28.00,27.78,0.22,After
REGRESSION.HCC1395_tumor.L008,6,Cycle,Base Insertion,38798,0.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,6,Cycle,Base Deletion,38798,1.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,60,Cycle,Base Substitution,38094,54.82,28.00,27.54,0.46,After
REGRESSION.HCC1395_tumor.L008,60,Cycle,Base Insertion,38043,1.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,60,Cycle,Base Deletion,38043,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,61,Cycle,Base Substitution,38170,47.01,28.00,27.55,0.45,After
REGRESSION.HCC1395_tumor.L008,61,Cycle,Base Insertion,38104,1.06,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,61,Cycle,Base Deletion,38104,3.43,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,62,Cycle,Base Substitution,38057,63.61,28.00,27.43,0.57,After
REGRESSION.HCC1395_tumor.L008,62,Cycle,Base Insertion,37991,1.44,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,62,Cycle,Base Deletion,37991,3.46,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,63,Cycle,Base Substitution,38067,59.93,28.00,27.42,0.58,After
REGRESSION.HCC1395_tumor.L008,63,Cycle,Base Insertion,37985,1.37,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,63,Cycle,Base Deletion,37985,3.45,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,64,Cycle,Base Substitution,38022,52.63,28.00,27.67,0.33,After
REGRESSION.HCC1395_tumor.L008,64,Cycle,Base Insertion,37932,2.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,64,Cycle,Base Deletion,37932,3.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,65,Cycle,Base Substitution,38078,40.28,29.00,27.58,1.42,After
REGRESSION.HCC1395_tumor.L008,65,Cycle,Base Insertion,37990,1.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,65,Cycle,Base Deletion,37990,3.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,66,Cycle,Base Substitution,37902,43.59,28.00,27.93,0.07,After
REGRESSION.HCC1395_tumor.L008,66,Cycle,Base Insertion,37804,1.67,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,66,Cycle,Base Deletion,37804,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,67,Cycle,Base Substitution,37947,55.07,28.00,27.45,0.55,After
REGRESSION.HCC1395_tumor.L008,67,Cycle,Base Insertion,37857,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,67,Cycle,Base Deletion,37857,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,68,Cycle,Base Substitution,37950,72.80,27.00,27.46,-0.46,After
REGRESSION.HCC1395_tumor.L008,68,Cycle,Base Insertion,37856,1.61,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,68,Cycle,Base Deletion,37856,3.60,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,69,Cycle,Base Substitution,37972,52.25,28.00,27.51,0.49,After
REGRESSION.HCC1395_tumor.L008,69,Cycle,Base Insertion,37880,1.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,69,Cycle,Base Deletion,37880,4.13,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,7,Cycle,Base Substitution,38698,41.57,29.00,27.72,1.28,After
REGRESSION.HCC1395_tumor.L008,7,Cycle,Base Insertion,38698,0.90,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,7,Cycle,Base Deletion,38698,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,70,Cycle,Base Substitution,37880,38.27,29.00,28.06,0.94,After
REGRESSION.HCC1395_tumor.L008,70,Cycle,Base Insertion,37779,1.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,70,Cycle,Base Deletion,37779,4.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,71,Cycle,Base Substitution,37947,39.92,29.00,27.65,1.35,After
REGRESSION.HCC1395_tumor.L008,71,Cycle,Base Insertion,37828,1.94,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,71,Cycle,Base Deletion,37828,3.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,72,Cycle,Base Substitution,37827,54.91,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L008,72,Cycle,Base Insertion,37704,1.56,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,72,Cycle,Base Deletion,37704,4.40,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,73,Cycle,Base Substitution,37914,63.44,28.00,27.26,0.74,After
REGRESSION.HCC1395_tumor.L008,73,Cycle,Base Insertion,37780,2.26,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,73,Cycle,Base Deletion,37780,5.17,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,74,Cycle,Base Substitution,37725,62.87,28.00,27.17,0.83,After
REGRESSION.HCC1395_tumor.L008,74,Cycle,Base Insertion,37584,1.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,74,Cycle,Base Deletion,37584,3.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,75,Cycle,Base Substitution,37757,55.67,28.00,27.62,0.38,After
REGRESSION.HCC1395_tumor.L008,75,Cycle,Base Insertion,37610,1.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,75,Cycle,Base Deletion,37610,3.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,76,Cycle,Base Substitution,37721,56.40,28.00,27.22,0.78,After
REGRESSION.HCC1395_tumor.L008,76,Cycle,Base Insertion,37560,1.91,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,76,Cycle,Base Deletion,37560,2.77,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,77,Cycle,Base Substitution,37635,64.93,28.00,27.32,0.68,After
REGRESSION.HCC1395_tumor.L008,77,Cycle,Base Insertion,37481,2.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,77,Cycle,Base Deletion,37481,3.33,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,78,Cycle,Base Substitution,37593,54.22,28.00,27.33,0.67,After
REGRESSION.HCC1395_tumor.L008,78,Cycle,Base Insertion,37434,1.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,78,Cycle,Base Deletion,37434,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,79,Cycle,Base Substitution,37540,66.98,27.00,27.36,-0.36,After
REGRESSION.HCC1395_tumor.L008,79,Cycle,Base Insertion,37362,1.58,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,79,Cycle,Base Deletion,37362,2.92,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,8,Cycle,Base Substitution,38696,47.31,28.00,27.48,0.52,After
REGRESSION.HCC1395_tumor.L008,8,Cycle,Base Insertion,38696,0.93,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,8,Cycle,Base Deletion,38696,2.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,80,Cycle,Base Substitution,37487,60.89,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L008,80,Cycle,Base Insertion,37309,1.75,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,80,Cycle,Base Deletion,37309,2.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,81,Cycle,Base Substitution,37473,56.85,28.00,27.12,0.88,After
REGRESSION.HCC1395_tumor.L008,81,Cycle,Base Insertion,37259,3.59,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,81,Cycle,Base Deletion,37259,3.18,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,82,Cycle,Base Substitution,37375,56.58,28.00,27.30,0.70,After
REGRESSION.HCC1395_tumor.L008,82,Cycle,Base Insertion,37176,2.11,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,82,Cycle,Base Deletion,37176,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,83,Cycle,Base Substitution,37305,53.91,28.00,27.40,0.60,After
REGRESSION.HCC1395_tumor.L008,83,Cycle,Base Insertion,37112,1.04,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,83,Cycle,Base Deletion,37112,3.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,84,Cycle,Base Substitution,37242,68.87,27.00,27.08,-0.08,After
REGRESSION.HCC1395_tumor.L008,84,Cycle,Base Insertion,37038,1.83,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,84,Cycle,Base Deletion,37038,4.35,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,85,Cycle,Base Substitution,37306,59.88,28.00,27.13,0.87,After
REGRESSION.HCC1395_tumor.L008,85,Cycle,Base Insertion,37109,1.14,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,85,Cycle,Base Deletion,37109,4.07,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,86,Cycle,Base Substitution,37206,55.05,28.00,26.77,1.23,After
REGRESSION.HCC1395_tumor.L008,86,Cycle,Base Insertion,36984,1.16,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,86,Cycle,Base Deletion,36984,4.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,87,Cycle,Base Substitution,37214,50.05,28.00,27.25,0.75,After
REGRESSION.HCC1395_tumor.L008,87,Cycle,Base Insertion,37007,1.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,87,Cycle,Base Deletion,37007,4.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,88,Cycle,Base Substitution,37021,75.05,27.00,26.94,0.06,After
REGRESSION.HCC1395_tumor.L008,88,Cycle,Base Insertion,36809,1.89,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,88,Cycle,Base Deletion,36809,4.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,89,Cycle,Base Substitution,36984,54.17,28.00,27.01,0.99,After
REGRESSION.HCC1395_tumor.L008,89,Cycle,Base Insertion,36777,2.12,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,89,Cycle,Base Deletion,36777,4.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,9,Cycle,Base Substitution,38736,44.84,29.00,27.73,1.27,After
REGRESSION.HCC1395_tumor.L008,9,Cycle,Base Insertion,38736,0.81,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,9,Cycle,Base Deletion,38736,3.49,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,90,Cycle,Base Substitution,37020,54.60,28.00,27.20,0.80,After
REGRESSION.HCC1395_tumor.L008,90,Cycle,Base Insertion,36796,1.64,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,90,Cycle,Base Deletion,36796,4.20,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,91,Cycle,Base Substitution,37131,62.14,28.00,27.49,0.51,After
REGRESSION.HCC1395_tumor.L008,91,Cycle,Base Insertion,36906,1.02,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,91,Cycle,Base Deletion,36906,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,92,Cycle,Base Substitution,36917,74.22,27.00,27.06,-0.06,After
REGRESSION.HCC1395_tumor.L008,92,Cycle,Base Insertion,36694,0.86,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,92,Cycle,Base Deletion,36694,4.27,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,93,Cycle,Base Substitution,36865,52.25,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L008,93,Cycle,Base Insertion,36611,0.63,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,93,Cycle,Base Deletion,36611,3.88,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,94,Cycle,Base Substitution,36791,56.25,27.00,26.93,0.07,After
REGRESSION.HCC1395_tumor.L008,94,Cycle,Base Insertion,36525,1.32,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,94,Cycle,Base Deletion,36525,4.68,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,95,Cycle,Base Substitution,36810,56.98,28.00,27.22,0.78,After
REGRESSION.HCC1395_tumor.L008,95,Cycle,Base Insertion,36523,1.52,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,95,Cycle,Base Deletion,36523,4.08,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,96,Cycle,Base Substitution,36720,65.21,27.00,27.10,-0.10,After
REGRESSION.HCC1395_tumor.L008,96,Cycle,Base Insertion,36436,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,96,Cycle,Base Deletion,36436,4.22,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,97,Cycle,Base Substitution,36634,64.22,28.00,27.02,0.98,After
REGRESSION.HCC1395_tumor.L008,97,Cycle,Base Insertion,36341,1.39,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,97,Cycle,Base Deletion,36341,3.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,98,Cycle,Base Substitution,36560,64.65,27.00,26.87,0.13,After
REGRESSION.HCC1395_tumor.L008,98,Cycle,Base Insertion,36288,1.25,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,98,Cycle,Base Deletion,36288,3.53,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,99,Cycle,Base Substitution,36297,61.29,28.00,27.09,0.91,After
REGRESSION.HCC1395_tumor.L008,99,Cycle,Base Insertion,36033,1.41,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,99,Cycle,Base Deletion,36033,3.87,45.00,45.00,0.00,After
REGRESSION.HCC1395_tumor.L008,10,QualityScore,Base Substitution,25817,2703.69,10.00,10.00,0.00,After
REGRESSION.HCC1395_tumor.L008,11,QualityScore,Base Substitution,9320,666.82,11.00,11.00,0.00,After
REGRESSION.HCC1395_tumor.L008,12,QualityScore,Base Substitution,28017,1699.55,12.00,12.00,0.00,After
REGRESSION.HCC1395_tumor.L008,13,QualityScore,Base Substitution,12484,251.74,16.00,13.00,3.00,After
REGRESSION.HCC1395_tumor.L008,14,QualityScore,Base Substitution,12216,180.75,17.00,14.00,3.00,After
REGRESSION.HCC1395_tumor.L008,15,QualityScore,Base Substitution,17499,13.32,21.00,15.00,6.00,After
REGRESSION.HCC1395_tumor.L008,16,QualityScore,Base Substitution,7760,0.33,20.00,16.00,4.00,After
REGRESSION.HCC1395_tumor.L008,17,QualityScore,Base Substitution,14222,0.87,22.00,17.00,5.00,After
REGRESSION.HCC1395_tumor.L008,21,QualityScore,Base Substitution,98,0.00,21.00,21.00,0.00,After
REGRESSION.HCC1395_tumor.L008,22,QualityScore,Base Substitution,39105,228.29,22.00,22.00,0.00,After
REGRESSION.HCC1395_tumor.L008,23,QualityScore,Base Substitution,74322,431.18,22.00,23.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,24,QualityScore,Base Substitution,120544,417.96,25.00,24.00,1.00,After
REGRESSION.HCC1395_tumor.L008,25,QualityScore,Base Substitution,110480,193.93,27.00,25.00,2.00,After
REGRESSION.HCC1395_tumor.L008,28,QualityScore,Base Substitution,8195,0.72,29.00,28.00,1.00,After
REGRESSION.HCC1395_tumor.L008,29,QualityScore,Base Substitution,60065,101.67,28.00,29.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,30,QualityScore,Base Substitution,2574900,1624.58,32.00,30.00,2.00,After
REGRESSION.HCC1395_tumor.L008,31,QualityScore,Base Substitution,2728435,1107.52,34.00,31.00,3.00,After
REGRESSION.HCC1395_tumor.L008,32,QualityScore,Base Substitution,4595913,1105.58,36.00,32.00,4.00,After
REGRESSION.HCC1395_tumor.L008,33,QualityScore,Base Substitution,495366,81.78,36.00,33.00,3.00,After
REGRESSION.HCC1395_tumor.L008,45,QualityScore,Base Insertion,10990089,458.83,44.00,45.00,-1.00,After
REGRESSION.HCC1395_tumor.L008,45,QualityScore,Base Deletion,10990089,1015.37,41.00,45.00,-4.00,After
REGRESSION.HCC1395_tumor.L008,8,QualityScore,Base Substitution,2387,424.35,8.00,8.00,0.00,After
REGRESSION.HCC1395_tumor.L008,9,QualityScore,Base Substitution,52944,7554.85,8.00,9.00,-1.00,After