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Sig_18_tissue_full_basic_stats.tsv
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s3://natera-rnd-pltf-dev-s3-gitlab-results/daq/build2811337/regression-run/63920766/reports/raw_qc/seqtool/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
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5.0 KB
Workflow Run
gitlab-daq-build2811337-regression-run-63920766
Published
Jun 08, 2026 3:18 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.73813 0.261861 0.803331 0.196669 138 218 335 457316 0.998949 367376 89940 675835 239761 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed 36 0.009129 0.0 0.056549 0.0 0.052706 0.134961 0.321796 0.355793 0.714783 1.572856 1.063713 1.356436 0.866178 0.714468 0.702746 1.027469 0.688793 0.0 0.0 0.0 0.016551 0.0 1.323868 1.656403 843.0 0.0 0.0 0.0 0.0 27.0 0.996403 0.999941 374610 136300 0.009886 0.003597 37892425 0.0 66 -14.2855 -0.0008 37922265
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.757759 0.242232 0.8063 0.1937 138 218 335 457316 0.998949 368734 88582 693807 221789 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed 36 0.0 0.0 0.0 0.0 0.051372 0.284163 0.465341 0.478445 0.906471 1.931226 1.296059 1.316885 0.806975 0.59314 0.615623 0.618375 0.518565 0.336494 0.0 0.0 0.0 0.0 1.174775 1.604051 843.0 0.0 0.0 0.0 0.0 23.0 0.99701 0.999952 439609 138149 0.009514 0.00299 46204919 0.0 66 -14.2855 -0.0008 46390665
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.276479 0.723513 0.284204 0.715796 138 218 335 457316 0.998949 129971 327345 253145 662451 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 altera_v3_targets_postQC_hg38.bed 36 0.00139 0.0 0.0 0.0 0.0077 0.002328 0.097943 0.009855 0.440558 2.66828 1.190988 2.078681 0.974528 0.019632 0.05884 0.304809 0.001032 0.0 0.0 0.0 0.001043 0.0 4.665626 1.952069 843.0 0.0 0.0 0.0 0.0 173.0 0.989228 0.999563 56924 55083 0.011132 0.010772 5113361 0.0 66 -14.2855 -0.0008 5116424
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.034384 0.965607 0.043198 0.956802 138 218 335 457316 0.998949 19755 437561 31482 884114 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 altera_v3_targets_coding_postQC_hg38.bed 36 0.0 0.0 0.0 0.0 0.0 0.0 0.028575 0.029533 0.301281 0.461588 0.761878 1.458565 2.248958 0.52819 4.977331 1.761781 0.0 0.0 0.0 0.0 0.0 0.0 1.03117 1.97026 693.0 0.0 0.0 0.0 0.0 0.0 0.996426 1.0 6276 5838 0.003842 0.003574 1633455 0.0 66 -14.2855 -0.0008 1633455
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.258294 0.741697 0.266334 0.733666 138 218 335 457316 0.998949 121799 335517 236495 679101 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 altera_v3_targets_noncoding_postQC_hg38.bed 36 0.001287 0.0 0.0 0.002699 0.002744 0.031309 0.098683 0.032066 2.246227 2.363703 1.342411 2.640091 1.55592 0.377614 0.019461 0.140074 0.000824 0.06276 0.0 0.0 0.002671 0.0 6.371626 1.957437 843.0 0.0 0.0 0.0 0.0 320.0 0.985849 0.999359 50648 49245 0.014554 0.014151 3479906 0.0 66 -14.2855 -0.0008 3482969
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.467734 0.532257 0.529275 0.470725 138 218 335 457316 0.998949 242046 215270 428259 487337 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed 36 0.014199 0.0 0.107141 0.0 0.086658 0.330765 0.42223 0.690173 0.812165 0.960661 1.093744 1.137021 0.990333 1.250432 1.239183 1.632949 1.326076 0.0 0.0 0.0 0.363528 0.0 0.805977 1.634082 357.0 0.0 0.0 0.0 0.0 25.0 0.997511 1.0 316344 80854 0.009737 0.002489 32490522 0.0 66 -14.2855 -0.0008 32516152
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.0 0.999991 0.0 1.0 138 218 335 457316 0.998949 0 457316 0 915596 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 FINAL_hotspot_list_07302025_hg38_sorted.bed 36 2.212121 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.192811 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.289683 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 73 0.0 66 -14.2855 -0.0008 73
Sig_18_tissue.md 999980 8 8e-06 915604 0.084378 457797 0.007739 0.992252 0.008725 0.991275 138 218 335 457316 0.998949 3990 453326 7086 908510 241.867831 94.874466 84376 0.985166 0.958719 0.958719 141505598 foresight_clarity_targets_hg38.bed 36 0.0 0.0 0.0 0.0 0.0 0.0 0.035408 0.58456 0.219233 0.703985 0.002726 2.374991 0.918769 2.677936 1.598875 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.68359 1.987347 343.0 0.0 0.0 0.0 0.0 0.0 0.998247 1.0 4511 1168 0.006771 0.001753 666239 0.0 66 -14.2855 -0.0008 667386
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