control_type,sample_id,variant_type,qc_metric_name,qc_value
germline,HCC1395_BL,cnv,germline_control_cnv_abnormal_ploidy,false
germline,HCC1395_BL,cnv,germline_control_cnv_abnormal_ploidy_chromosomes,NONE
germline,HCC1395_BL,cnv,germline_control_cnv_del_dup_pass_ratio,NA
germline,HCC1395_BL,cnv,germline_control_cnv_del_pass_count,1
germline,HCC1395_BL,cnv,germline_control_cnv_dup_pass_count,0
germline,HCC1395_BL,cnv,germline_control_cnv_landmark_del_missed,UGT2B17;UGT2B28
germline,HCC1395_BL,cnv,germline_control_cnv_landmark_del_recovered_count,0
germline,HCC1395_BL,cnv,germline_control_cnv_landmark_del_truth_total,2
germline,HCC1395_BL,cnv,germline_control_cnv_qc_failed,false
germline,HCC1395_BL,cnv,germline_control_cnv_ugt2b17_del_cn,NA
germline,HCC1395_BL,cnv,germline_control_cnv_ugt2b17_del_filter,NOT_CALLED
germline,HCC1395_BL,cnv,germline_control_cnv_ugt2b28_del_cn,NA
germline,HCC1395_BL,cnv,germline_control_cnv_ugt2b28_del_filter,NOT_CALLED
germline,HCC1395_BL,snv_indel,germline_control_snv_indel_giab_missed_variants,chr11:78079607:T:C;chr12:14928963:A:C;chr13:101721213:A:T;chr14:20060200:G:T;chr19:14799626:C:T;chr19:43848513:T:C;chr2:184937028:A:G;chr4:122894207:T:C;chr4:168448702:A:T;chr5:120686124:G:A;chr7:102934552:TGAA:T;chr9:94606867:C:T
germline,HCC1395_BL,snv_indel,germline_control_snv_indel_giab_recovered_count,0
germline,HCC1395_BL,snv_indel,germline_control_snv_indel_giab_truth_total,12
germline,HCC1395_BL,snv_indel,germline_control_snv_indel_indel_count,14
germline,HCC1395_BL,snv_indel,germline_control_snv_indel_snv_count,312
germline,Sig_18_Blood,cnv,germline_control_cnv_abnormal_ploidy,false
germline,Sig_18_Blood,cnv,germline_control_cnv_abnormal_ploidy_chromosomes,NONE
germline,Sig_18_Blood,cnv,germline_control_cnv_del_dup_pass_ratio,3.0000
germline,Sig_18_Blood,cnv,germline_control_cnv_del_pass_count,3
germline,Sig_18_Blood,cnv,germline_control_cnv_dup_pass_count,1
germline,Sig_18_Blood,cnv,germline_control_cnv_landmark_del_missed,UGT2B17;UGT2B28
germline,Sig_18_Blood,cnv,germline_control_cnv_landmark_del_recovered_count,0
germline,Sig_18_Blood,cnv,germline_control_cnv_landmark_del_truth_total,2
germline,Sig_18_Blood,cnv,germline_control_cnv_qc_failed,false
germline,Sig_18_Blood,cnv,germline_control_cnv_ugt2b17_del_cn,NA
germline,Sig_18_Blood,cnv,germline_control_cnv_ugt2b17_del_filter,NOT_CALLED
germline,Sig_18_Blood,cnv,germline_control_cnv_ugt2b28_del_cn,NA
germline,Sig_18_Blood,cnv,germline_control_cnv_ugt2b28_del_filter,NOT_CALLED
germline,Sig_18_Blood,snv_indel,germline_control_snv_indel_giab_missed_variants,chr11:78079607:T:C;chr12:14928963:A:C;chr13:101721213:A:T;chr14:20060200:G:T;chr19:14799626:C:T;chr19:43848513:T:C;chr2:184937028:A:G;chr4:122894207:T:C;chr4:168448702:A:T;chr5:120686124:G:A;chr7:102934552:TGAA:T;chr9:94606867:C:T
germline,Sig_18_Blood,snv_indel,germline_control_snv_indel_giab_recovered_count,0
germline,Sig_18_Blood,snv_indel,germline_control_snv_indel_giab_truth_total,12
germline,Sig_18_Blood,snv_indel,germline_control_snv_indel_indel_count,18
germline,Sig_18_Blood,snv_indel,germline_control_snv_indel_snv_count,336
negative_somatic,HCC1395_BL,mimsi,negative_somatic_control_mimsi_lci,NA
negative_somatic,HCC1395_BL,mimsi,negative_somatic_control_mimsi_max_msi_score,NA
negative_somatic,HCC1395_BL,mimsi,negative_somatic_control_mimsi_mean_msi_score,NA
negative_somatic,HCC1395_BL,mimsi,negative_somatic_control_mimsi_min_msi_score,NA
negative_somatic,HCC1395_BL,mimsi,negative_somatic_control_mimsi_msi_status,NA
negative_somatic,HCC1395_BL,mimsi,negative_somatic_control_mimsi_uci,NA
negative_somatic,HCC1395_BL,msi,negative_somatic_control_msi_total_sites,0
negative_somatic,HCC1395_BL,msi,negative_somatic_control_msi_unstable_pct,0.00
negative_somatic,HCC1395_BL,msi,negative_somatic_control_msi_unstable_sites,0
negative_somatic,HCC1395_BL,snv_indel,negative_somatic_control_snv_indel_indel_count,0
negative_somatic,HCC1395_BL,snv_indel,negative_somatic_control_snv_indel_snv_count,0
negative_somatic,HCC1395_BL,tmb,negative_somatic_control_tmb_effective_coding_region_size,34.15
negative_somatic,HCC1395_BL,tmb,negative_somatic_control_tmb_non_synonymous_count,0
negative_somatic,HCC1395_BL,tmb,negative_somatic_control_tmb_score,0.0
negative_somatic,Sig_18_Blood,mimsi,negative_somatic_control_mimsi_lci,NA
negative_somatic,Sig_18_Blood,mimsi,negative_somatic_control_mimsi_max_msi_score,NA
negative_somatic,Sig_18_Blood,mimsi,negative_somatic_control_mimsi_mean_msi_score,NA
negative_somatic,Sig_18_Blood,mimsi,negative_somatic_control_mimsi_min_msi_score,NA
negative_somatic,Sig_18_Blood,mimsi,negative_somatic_control_mimsi_msi_status,NA
negative_somatic,Sig_18_Blood,mimsi,negative_somatic_control_mimsi_uci,NA
negative_somatic,Sig_18_Blood,msi,negative_somatic_control_msi_total_sites,0
negative_somatic,Sig_18_Blood,msi,negative_somatic_control_msi_unstable_pct,0.00
negative_somatic,Sig_18_Blood,msi,negative_somatic_control_msi_unstable_sites,0
negative_somatic,Sig_18_Blood,snv_indel,negative_somatic_control_snv_indel_indel_count,0
negative_somatic,Sig_18_Blood,snv_indel,negative_somatic_control_snv_indel_snv_count,0
negative_somatic,Sig_18_Blood,tmb,negative_somatic_control_tmb_effective_coding_region_size,34.15
negative_somatic,Sig_18_Blood,tmb,negative_somatic_control_tmb_non_synonymous_count,0
negative_somatic,Sig_18_Blood,tmb,negative_somatic_control_tmb_score,0.0
positive_somatic,HCC1395_tumor,mimsi,positive_somatic_control_mimsi_lci,NA
positive_somatic,HCC1395_tumor,mimsi,positive_somatic_control_mimsi_max_msi_score,NA
positive_somatic,HCC1395_tumor,mimsi,positive_somatic_control_mimsi_mean_msi_score,NA
positive_somatic,HCC1395_tumor,mimsi,positive_somatic_control_mimsi_min_msi_score,NA
positive_somatic,HCC1395_tumor,mimsi,positive_somatic_control_mimsi_msi_status,NA
positive_somatic,HCC1395_tumor,mimsi,positive_somatic_control_mimsi_uci,NA
positive_somatic,HCC1395_tumor,msi,positive_somatic_control_msi_total_sites,0
positive_somatic,HCC1395_tumor,msi,positive_somatic_control_msi_unstable_pct,0.00
positive_somatic,HCC1395_tumor,msi,positive_somatic_control_msi_unstable_sites,0
positive_somatic,HCC1395_tumor,snv_indel,positive_somatic_control_snv_indel_coa_missed_variants,PINNED_PAX7_3UTR_indel_benchmark;13655;PINNED_CDK6_3UTR_indel_benchmark;13983;376002
positive_somatic,HCC1395_tumor,snv_indel,positive_somatic_control_snv_indel_coa_recovered_count,0
positive_somatic,HCC1395_tumor,snv_indel,positive_somatic_control_snv_indel_coa_truth_total,5
positive_somatic,HCC1395_tumor,snv_indel,positive_somatic_control_snv_indel_indel_count,0
positive_somatic,HCC1395_tumor,snv_indel,positive_somatic_control_snv_indel_snv_count,0
positive_somatic,HCC1395_tumor,tmb,positive_somatic_control_tmb_effective_coding_region_size,34.15
positive_somatic,HCC1395_tumor,tmb,positive_somatic_control_tmb_non_synonymous_count,0
positive_somatic,HCC1395_tumor,tmb,positive_somatic_control_tmb_score,0.0
positive_somatic,Sig_18_tissue,mimsi,positive_somatic_control_mimsi_lci,NA
positive_somatic,Sig_18_tissue,mimsi,positive_somatic_control_mimsi_max_msi_score,NA
positive_somatic,Sig_18_tissue,mimsi,positive_somatic_control_mimsi_mean_msi_score,NA
positive_somatic,Sig_18_tissue,mimsi,positive_somatic_control_mimsi_min_msi_score,NA
positive_somatic,Sig_18_tissue,mimsi,positive_somatic_control_mimsi_msi_status,NA
positive_somatic,Sig_18_tissue,mimsi,positive_somatic_control_mimsi_uci,NA
positive_somatic,Sig_18_tissue,msi,positive_somatic_control_msi_total_sites,0
positive_somatic,Sig_18_tissue,msi,positive_somatic_control_msi_unstable_pct,0.00
positive_somatic,Sig_18_tissue,msi,positive_somatic_control_msi_unstable_sites,0
positive_somatic,Sig_18_tissue,snv_indel,positive_somatic_control_snv_indel_coa_missed_variants,PINNED_PAX7_3UTR_indel_benchmark;13655;PINNED_CDK6_3UTR_indel_benchmark;13983;376002
positive_somatic,Sig_18_tissue,snv_indel,positive_somatic_control_snv_indel_coa_recovered_count,0
positive_somatic,Sig_18_tissue,snv_indel,positive_somatic_control_snv_indel_coa_truth_total,5
positive_somatic,Sig_18_tissue,snv_indel,positive_somatic_control_snv_indel_indel_count,0
positive_somatic,Sig_18_tissue,snv_indel,positive_somatic_control_snv_indel_snv_count,0
positive_somatic,Sig_18_tissue,tmb,positive_somatic_control_tmb_effective_coding_region_size,34.15
positive_somatic,Sig_18_tissue,tmb,positive_somatic_control_tmb_non_synonymous_count,0
positive_somatic,Sig_18_tissue,tmb,positive_somatic_control_tmb_score,0.0