File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/472f5e01c769baa504aff2d0b07aa8/.command.sh
Size
313 bytes
Task
DAQ:FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ (HCC1395_tumor)
Attempt

Content

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#!/bin/bash -Ceuo pipefail
ngscheckmate_fastq \
    -1 HCC1395_tumor_R1.fastq.gz \
    -2 HCC1395_tumor_R2.fastq.gz \
    SNP_GRCh38_hg38_wChr.pt \
    -p 4 \
    -s 0.05 \
    > HCC1395_tumor.vaf

cat <<-END_VERSIONS > versions.yml
"DAQ:FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ":
    ngscheckmate: 1.0
END_VERSIONS