File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/db58fa36dbd6bf2a1a03747300acf2/.command.log
Size
8.4 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/d3b4192e5b17186467025867670b12/Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/347a990c4dc2260902c52ed36ab6f0/HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/518ade584338d1e989efc6c2a97f8f/Sig_18_Blood.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/f222fb3371238e6a01aaffac2e0845/HCC1395_tumor.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/e9ff491bc8bbeccc3bb68f6aac2908/HCC1395_BL.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/b76686c1962bb9ef9409d9d3d79417/HCC1395_BL_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/ed3fd50b3dcbd3ecc03c3af273ed02/HCC1395_BL_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/33a3283b31c608dc9276ef31c1d903/Sig_18_Blood.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/8accff2f2cf998f1b6066f1378bc43/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/8534396910675940252ca9934d82b4/HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/93d35f2dac8fad174047f37985e0ab/Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/10ab089a3beeee41f6983cccc3bc4a/HCC1395_tumor_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/063506418ce8c16a2790aee8fca3fd/HCC1395_tumor.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/95292a1c1dad82955aad0ab8ba0459/Sig_18_tissue_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/45feeecdc56f54f316a89b678423ec/Sig_18_tissue.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/48b8b93fb3831e505792e5a5125897/Sig_18_tissue.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/4871a0519e47570f302661d8dd5968/Sig_18_tissue_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/bf1e788b3e0c5a26b97fda2b1abb78/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/f58eed2ef3550a176548b5322ab81d/Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/9817f9e219511bdca6563106a8dbad/HCC1395_tumor.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/def66161b51513b71493c88d5ac4eb/Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/c9698ca6edd4d093c7057b229b936a/Sig_18_Blood.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/791bde000dd2bfc15b7e92cbec6598/HCC1395_tumor_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/db58fa36dbd6bf2a1a03747300acf2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/fc9889283551e0c2757e48d6b637c8/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/66ab7d6c368b31ed5e5c3102ff15f4/HCC1395_BL_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/ca03aab8bf6e741d22a3ea505e674d/Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/78f1793f76ffb4714809eb88f389ec/Sig_18_Blood_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/2207addeb2a3366c9c8826e8c910f3/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/103cd2a7248693c7f5fb9bbb2ca137/Sig_18_Blood_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/db58fa36dbd6bf2a1a03747300acf2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/06c0c041c7912031251cef47cc42f9/HCC1395_tumor_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/3a063a7c37107a9ee204da15cbad1b/HCC1395_BL.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/d4cbb3f95fd554b244db019b7e8995/HCC1395_BL.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/21593f00911da2b6772339bc52b38e/Sig_18_tissue.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/65259f8b655b5c979ee71590bd5423/HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/a7c528cfa1493d108a0c4440de9f73/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/39ce2697dd69c5adf1ef4e160834ae/Sig_18_Blood_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/fbbe82abc2522d1ba5357854b30a4b/HCC1395_tumor_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/b9279c9c677977a197c14712e74c52/Sig_18_Blood_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/dc946c533c58313f8aee44a42b2937/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/071ef7ad5829a940b861c99c1d4be4/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/c62b0bd5155096307d704e78307c79/HCC1395_tumor_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/1c73808d73cea248a534e34dcea023/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/19370b4cab344f76ea7403e083c69d/HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/b9e144414462a8174ec4d84af41155/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/e18fafa551730aa79a9ae77db96bdf/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/2a38316b37081260ee449513045565/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/b383accd84bfa4883ed20f48a93014/Sig_18_tissue_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/00ed1ffe669a954ca556efebe83084/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
==> STAGING COMPLETE (50 inputs)

Post-dedup QC aggregation complete: 4 samples
Tools: samtools, mosdepth, sentieon, seqtool
Output: postdedup_qc.json