Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/26b38ee7bfe41f53b8a64ac4b063be/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/26b38ee7bfe41f53b8a64ac4b063be/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:22.906522Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:22.914411Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:22.914440Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:22.914446Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:22.914450Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXavgTgL'
[2026-06-08T22:19:22.914454Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:22.914459Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:22.914463Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:22.914466Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:22.914470Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:22.914474Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:22.914477Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:22.914481Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:22.914485Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:22.915542Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:22.915616Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:22.921472Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:22.922223Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:22.922404Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:22.922566Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:22.922758Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923141Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923231Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923307Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923490Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923582Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923703Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923766Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.923887Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.924068Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.924476Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.924684Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.924829Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.924993Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.925341Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.925844Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.926302Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.926465Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.926609Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.929701Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.929908Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:22.930109Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930272Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930354Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930479Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930545Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930663Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930729Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930846Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.930914Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931025Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931093Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931273Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931335Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931453Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931557Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931682Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931861Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.931974Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.932034Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.932143Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.932678Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.933103Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.933168Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.933601Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.933664Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.933777Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.933897Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.934014Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.934106Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.934329Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.934733Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.934843Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.934906Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935022Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935084Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935200Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935268Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935378Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935444Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935553Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935620Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935735Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.935943Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.936455Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.936522Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.936630Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.936696Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.950899Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.950996Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.951069Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.951397Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.951955Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.952045Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.953369Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.954025Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.954107Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.954158Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:23.019880Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.020608Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.021296Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.022184Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.025167Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.025983Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:19:23.026445Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.028339Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.031784Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:19:23.032064Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.033155Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.038294Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:23.042900Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:19:23.043678Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:19:23.048549Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:19:23.048962Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:23.050290Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:23.149777Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.149846Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150683Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151455Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.158305Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:19:23.159753Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:19:23.871564Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.872552Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.876765Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:19:24.088049Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.088841Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.092842Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:24.755270Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.756427Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.760149Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:25.623105Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.624326Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.627716Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:19:25.889697Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.889800Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.889824Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.890630Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.891150Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.891868Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.895859Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:25.897943Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:25.899178Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:19:25.959012Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.959114Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.959169Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.959985Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.962548Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.965179Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.965588Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:25.966095Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:25.968702Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:26.030307Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.030429Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.030457Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.031213Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.032110Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.034745Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.035813Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:26.039563Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:19:26.040762Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:19:26.100756Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.100859Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.100895Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.101786Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.102172Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.102487Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.107525Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:26.109146Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:26.110694Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:19:26.168556Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.168659Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.169487Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.169880Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.173690Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:19:26.174904Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:26.235929Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.237010Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.242586Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:26.353631Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.354438Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.358303Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:19:26.387007Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.387864Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.390930Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:19:26.452613Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.453342Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.457658Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:19:26.470165Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.470852Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.474511Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:19:26.786221Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.787151Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.790715Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:19:26.852370Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.853125Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.856620Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:26.918043Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.918841Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.922163Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:26.983565Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.984413Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.988195Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:19:27.199753Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.200580Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.204725Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:19:27.265745Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.266731Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.270084Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:27.832823Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.833572Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.836729Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:19:28.249179Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.249932Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.260679Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:19:28.321817Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.322787Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.326161Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:19:28.387615Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.388382Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.391700Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:19:28.420814Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.421548Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.425235Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:28.430028Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.430846Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.434239Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:19:28.495157Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.495268Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.495926Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.496459Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.499860Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:28.500590Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.500966Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:28.501451Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.505043Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:19:28.565836Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.565937Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.566457Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.566752Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.570606Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:19:28.571486Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:19:28.631609Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.632288Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.635977Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:28.797471Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.798142Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.802024Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:28.862866Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.863518Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.866524Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:28.979206Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.979860Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.983108Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:19:29.245615Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.246280Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.249436Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:19:29.310862Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.310960Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.311595Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.312385Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.315887Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:19:29.316999Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:19:29.379295Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.379394Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.379935Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.380810Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.383314Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:29.386515Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:19:29.447510Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.448341Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.452363Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:19:29.513004Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.627541Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.628435Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.631468Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:19:29.692777Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.692935Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.693834Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.697778Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:29.758557Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.223775Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.224520Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.227785Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:19:30.288863Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.353160Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.353934Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.357740Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:19:30.418422Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.582940Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.583677Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.587131Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:30.648279Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.314379Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.315025Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.318821Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:19:31.379951Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.494480Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.495130Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.498644Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:19:31.561138Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.561524Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.561742Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.562640Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.563218Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.567229Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:31.569032Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:31.570158Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:31.630154Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.630274Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.630307Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.630652Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.631370Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.635502Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:31.636577Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:31.698706Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.698821Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.699154Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.702916Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:31.764118Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.483261Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:41.788090Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:41.788090Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] 
[2026-06-08T22:19:41.788090Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:41.788212Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] 
[2026-06-08T22:19:41.788219Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:41.788226Z] [nf-4e26b38ee7bfe41f53b8a64ac4b063be-fd3bc-pf6wg] [601_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec