[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.baiThe index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/reference-NA12878-downsampled-500k.bam.bai
ls: cannot access 'negative_somatic_control_2_results.npy': No such file or directory