cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --algo AlignmentStat HCC1395_tumor.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo HCC1395_tumor.sentieon.insert_size_metrics --algo QualDistribution HCC1395_tumor.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle HCC1395_tumor.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle HCC1395_tumor.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.0s, est remaining 0.9s, peak mem 75MB, user 0.1s, sys 1.1s, output queue size 13
progress 10% @chr2:68000001, elapsed 0.1s, est remaining 0.9s, peak mem 75MB, user 0.2s, sys 2.5s, output queue size 41
progress 15% @chr2:231000001, elapsed 0.2s, est remaining 0.9s, peak mem 75MB, user 0.3s, sys 4.0s, output queue size 48
progress 20% @chr3:150000001, elapsed 0.2s, est remaining 0.8s, peak mem 75MB, user 0.4s, sys 5.6s, output queue size 26
progress 25% @chr4:138000001, elapsed 0.3s, est remaining 0.8s, peak mem 75MB, user 0.5s, sys 7.2s, output queue size 36
progress 30% @chr5:21000001, elapsed 0.3s, est remaining 0.8s, peak mem 75MB, user 0.6s, sys 9.2s, output queue size 65
progress 35% @chr6:90000001, elapsed 0.4s, est remaining 0.8s, peak mem 75MB, user 0.7s, sys 11.1s, output queue size 40
progress 40% @chr7:38000001, elapsed 0.5s, est remaining 0.7s, peak mem 75MB, user 0.8s, sys 13.2s, output queue size 19
progress 45% @chr8:82000001, elapsed 0.5s, est remaining 0.7s, peak mem 75MB, user 0.9s, sys 15.1s, output queue size 18
progress 50% @chr9:99000001, elapsed 0.6s, est remaining 0.6s, peak mem 75MB, user 1.0s, sys 17.1s, output queue size 18
progress 55% @chr10:118000001, elapsed 0.7s, est remaining 0.5s, peak mem 75MB, user 1.1s, sys 19.0s, output queue size 22
progress 60% @chr11:101000001, elapsed 0.7s, est remaining 0.5s, peak mem 75MB, user 1.2s, sys 21.0s, output queue size 22
progress 65% @chr13:1000001, elapsed 0.8s, est remaining 0.4s, peak mem 75MB, user 1.2s, sys 23.0s, output queue size 14
progress 70% @chr14:43000001, elapsed 0.9s, est remaining 0.4s, peak mem 75MB, user 1.3s, sys 24.9s, output queue size 18
progress 75% @chr15:95000001, elapsed 0.9s, est remaining 0.3s, peak mem 75MB, user 1.4s, sys 26.9s, output queue size 20
progress 80% @chr18:26000001, elapsed 1.0s, est remaining 0.3s, peak mem 75MB, user 1.5s, sys 28.8s, output queue size 14
progress 85% @chr20:3000001, elapsed 1.1s, est remaining 0.2s, peak mem 75MB, user 1.6s, sys 30.8s, output queue size 20
progress 90% @chrX:37000001, elapsed 1.2s, est remaining 0.1s, peak mem 87MB, user 2.3s, sys 32.0s, output queue size 114
progress 95% @chrY:53000001, elapsed 1.3s, est remaining 0.1s, peak mem 105MB, user 3.1s, sys 34.0s, output queue size 276
progress 100% @chr21:41000001, elapsed 2.1s, est remaining 0.0s, peak mem 126MB, user 6.4s, sys 36.9s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 50813903
reads: 1001320
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.334 user 18.577 sys 20.868 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.003 sys 2.091 real
idle: 84 calls 0.005 user 0.010 sys 50.832 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 132222976 mem 6.549 user 37.567 sys 3.145 real