cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:187000001, elapsed 0.1s, est remaining 2.3s, peak mem 807MB, user 0.1s, sys 3.8s, output queue size 124
progress 10% @chr3:87000001, elapsed 0.2s, est remaining 1.9s, peak mem 807MB, user 0.3s, sys 13.0s, output queue size 286
progress 15% @chr4:91000001, elapsed 0.3s, est remaining 1.6s, peak mem 807MB, user 0.3s, sys 25.0s, output queue size 448
progress 20% @chr1:54000001, elapsed 0.4s, est remaining 1.4s, peak mem 807MB, user 0.5s, sys 38.6s, output queue size 592
progress 25% @chr4:135000001, elapsed 0.4s, est remaining 1.3s, peak mem 807MB, user 0.8s, sys 50.7s, output queue size 754
progress 30% @chr7:60000001, elapsed 0.5s, est remaining 1.2s, peak mem 807MB, user 0.9s, sys 62.6s, output queue size 821
progress 35% @chr8:39000001, elapsed 0.6s, est remaining 1.1s, peak mem 807MB, user 1.0s, sys 75.8s, output queue size 971
progress 40% @chr8:127000001, elapsed 0.7s, est remaining 1.0s, peak mem 807MB, user 1.1s, sys 90.6s, output queue size 1111
progress 45% @chr10:72000001, elapsed 0.8s, est remaining 0.9s, peak mem 807MB, user 1.3s, sys 101.7s, output queue size 1272
progress 50% @chr5:64000001, elapsed 0.8s, est remaining 0.8s, peak mem 807MB, user 1.8s, sys 112.3s, output queue size 1434
progress 55% @chr12:33000001, elapsed 0.9s, est remaining 0.7s, peak mem 807MB, user 2.4s, sys 126.1s, output queue size 1595
progress 60% @chr12:126000001, elapsed 0.9s, est remaining 0.6s, peak mem 807MB, user 2.8s, sys 145.3s, output queue size 1757
progress 65% @chr12:122000001, elapsed 1.0s, est remaining 0.5s, peak mem 807MB, user 3.2s, sys 162.0s, output queue size 1853
progress 70% @chr14:36000001, elapsed 1.0s, est remaining 0.4s, peak mem 810MB, user 3.7s, sys 176.3s, output queue size 2016
progress 75% @chr18:48000001, elapsed 1.1s, est remaining 0.4s, peak mem 810MB, user 4.1s, sys 190.5s, output queue size 2177
progress 80% @chr22:24000001, elapsed 1.2s, est remaining 0.3s, peak mem 810MB, user 4.5s, sys 206.7s, output queue size 2338
progress 85% @chr15:21000001, elapsed 1.2s, est remaining 0.2s, peak mem 810MB, user 5.0s, sys 220.0s, output queue size 2500
progress 90% @chr18:19000001, elapsed 1.3s, est remaining 0.1s, peak mem 810MB, user 5.5s, sys 236.6s, output queue size 2777
progress 95% @chr5_KI270897v1_alt:1, elapsed 1.3s, est remaining 0.1s, peak mem 810MB, user 5.9s, sys 256.7s, output queue size 3183
progress 100% @HLA-B*15:01:01:02N:1, elapsed 1.5s, est remaining 0.0s, peak mem 810MB, user 6.2s, sys 285.3s, output queue size 713
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 53230
output file size: 44182
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.000 user 0.000 sys 0.012 real
"predict_filter": 187 calls 0.000 user 0.000 sys 0.018 real
advance: 3219322 calls 0.449 user 108.690 sys 113.781 real
done: 1 calls 0.003 user 0.000 sys 0.003 real
execute: 1 calls 0.005 user 0.006 sys 1.611 real
fetch_ref: 476 calls 0.001 user 0.081 sys 1.505 real
idle: 20633 calls 0.687 user 0.604 sys 736.000 real
init: 1 calls 0.337 user 0.157 sys 0.754 real
overall: 849481728 mem 8.216 user 295.238 sys 3.623 real