Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/5528bf21e4887f9b8c446a6232c66c/germline_control_1.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/41ea525307efe8cdba737539c890f5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/41ea525307efe8cdba737539c890f5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/36cd4bbf0af9a0e1fb0b57ddc578ba/germline_control_1.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: germline_control_1.mpileup.gz
Found 18 positions with indel observations
Annotating VCF: germline_control_1.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'germline_control_1.haplotyper.split.vcf.gz'
Output written to: germline_control_1.entropy.vcf