Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/33c485c585f69553975defb9f0282b/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/33c485c585f69553975defb9f0282b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/b9327ccd07f95c93afdb2eed727086/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/b9327ccd07f95c93afdb2eed727086/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:26.307035Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:26.308025Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:26.308045Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:26.308049Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:26.308054Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXsHTyQ5'
[2026-06-08T22:19:26.308058Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:26.308064Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:26.308068Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:26.308072Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:19:26.308076Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:26.308079Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:26.308083Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:26.308087Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:26.308091Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:26.308691Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:26.308824Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:26.314968Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:26.315819Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:26.316128Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:26.316357Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:26.316988Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.317461Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.317570Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.317663Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.317858Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.318117Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.318703Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.318894Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.319082Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.320247Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.322651Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.323058Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.323181Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.323720Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:26.324578Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.324975Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.325376Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.325851Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.326214Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.326611Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.326897Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.326965Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.327080Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.327151Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.327265Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.327328Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.327449Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.327518Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.328075Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.328416Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.328554Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.328654Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.328773Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.328838Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.328949Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.329018Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.329128Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.329196Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.329314Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.329471Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.329848Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.330450Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.330573Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.330640Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.331268Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.331332Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.331594Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.332394Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.332576Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.332646Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.332759Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.332826Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.332940Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.333006Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.333121Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.333182Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.333296Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.333363Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.333801Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.335111Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.335276Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.335343Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.335456Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.335523Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.335631Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.335705Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.349423Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.349552Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.349622Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.349834Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.349910Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.349999Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.350067Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.350185Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.350261Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.352047Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:26.374094Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.375204Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.375770Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.376525Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.377142Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.378109Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.379031Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.380210Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.383789Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.384927Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:26.390098Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:26.393912Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:26.395150Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:26.398786Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:26.401953Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:26.402499Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:26.500682Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.501564Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.505408Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:28.020215Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.021383Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.026107Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:28.237351Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.239668Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.244523Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:28.277755Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:28.303942Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.304055Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.304106Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.305281Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.306116Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.307088Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.313553Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:28.315188Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:28.316885Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:28.422395Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.423795Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.427868Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:28.488924Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.490163Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.494230Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:28.555131Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.556405Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.559426Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:28.620715Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.620835Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.621972Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.622554Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.628096Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:28.629381Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:28.656095Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.657286Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.660536Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:29.573983Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.574100Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.575163Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.575859Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.580158Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:29.581131Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:29.641168Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.641286Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.642425Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.642918Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.646748Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:29.648009Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:29.675684Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.676767Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.680368Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:29.680854Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.681818Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.685174Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:29.896699Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.897871Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.901418Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:29.914649Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.915708Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.918869Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:29.948008Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.949104Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.951753Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.952923Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:29.953085Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.957301Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:30.168744Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.169797Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.173170Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:30.234385Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.234489Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.235420Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.235903Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.239296Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:30.276168Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:30.300653Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.301668Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.305433Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:30.566807Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.568001Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.571279Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:30.933069Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.934193Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.937548Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:30.998771Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.999727Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.002786Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:31.364956Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.365923Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.369209Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:31.480429Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.480553Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.481440Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.481901Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.485553Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:31.486632Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:31.547045Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.547975Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.552106Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:31.612980Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.614002Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.617964Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:32.079882Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.080850Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.085400Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:32.146269Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.147155Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.150015Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:32.211446Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.211578Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.212409Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.212970Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.216993Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:32.218222Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:32.277782Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.277897Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.277937Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.278729Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.279234Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.279865Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.282391Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:32.285308Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:32.286437Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:32.314869Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.315420Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.318039Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.318697Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.319423Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:32.322072Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:32.322922Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.323696Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.326833Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:32.388002Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.388106Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.388875Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.389485Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.393055Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:32.394529Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:32.454403Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.454538Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.455345Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.455831Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.459510Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:32.460566Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:32.521977Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.522079Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.522766Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.523382Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.527930Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:32.529270Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:32.588831Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.588950Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.589627Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.592762Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:32.653975Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.686152Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.686831Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.689821Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:32.751046Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.116170Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.116957Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.120062Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:33.181432Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.446121Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.446616Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.449489Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:33.478761Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.479603Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.479888Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.482551Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:33.512327Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.927265Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.927800Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.930683Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:33.992103Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.507253Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.507756Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.510732Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:34.572008Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.572335Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.572509Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.572844Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.573218Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.577684Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:34.578848Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.579849Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.637797Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.637872Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.637895Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.638136Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.638417Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.641594Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.642456Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.670547Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.673894Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.674071Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.676910Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:34.706039Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.875376Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:45.196996Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:45.196996Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] 
[2026-06-08T22:19:45.196996Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:45.197096Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] 
[2026-06-08T22:19:45.197102Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:45.197110Z] [nf-c633c485c585f69553975defb9f0282b-f8e5a-rrf5j] [629_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec