cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:136000001, elapsed 0.3s, est remaining 5.8s, peak mem 386MB, user 0.6s, sys 7.8s, output queue size 29
progress 10% @chr2:49000001, elapsed 0.6s, est remaining 5.1s, peak mem 755MB, user 1.3s, sys 15.2s, output queue size 24
progress 15% @chr2:208000001, elapsed 0.8s, est remaining 4.7s, peak mem 941MB, user 1.8s, sys 22.7s, output queue size 27
progress 20% @chr3:168000001, elapsed 1.1s, est remaining 4.3s, peak mem 1019MB, user 2.2s, sys 29.3s, output queue size 30
progress 25% @chr4:129000001, elapsed 1.3s, est remaining 3.9s, peak mem 1184MB, user 2.8s, sys 36.1s, output queue size 32
progress 30% @chr5:56000001, elapsed 1.5s, est remaining 3.6s, peak mem 1367MB, user 3.4s, sys 42.9s, output queue size 48
progress 35% @chr6:39000001, elapsed 1.8s, est remaining 3.3s, peak mem 1460MB, user 3.9s, sys 49.2s, output queue size 26
progress 40% @chr7:39000001, elapsed 2.0s, est remaining 3.0s, peak mem 1553MB, user 4.4s, sys 55.9s, output queue size 38
progress 45% @chr8:43000001, elapsed 2.2s, est remaining 2.7s, peak mem 1697MB, user 5.0s, sys 62.2s, output queue size 29
progress 50% @chr9:80000001, elapsed 2.4s, est remaining 2.4s, peak mem 1820MB, user 5.5s, sys 69.0s, output queue size 17
progress 55% @chr10:91000001, elapsed 2.7s, est remaining 2.2s, peak mem 1904MB, user 6.1s, sys 75.7s, output queue size 27
progress 60% @chr11:131000001, elapsed 2.9s, est remaining 1.9s, peak mem 1970MB, user 6.4s, sys 82.7s, output queue size 25
progress 65% @chr13:24000001, elapsed 3.1s, est remaining 1.7s, peak mem 2036MB, user 6.8s, sys 89.5s, output queue size 4
progress 70% @chr14:53000001, elapsed 3.4s, est remaining 1.4s, peak mem 2147MB, user 7.3s, sys 96.2s, output queue size 13
progress 75% @chr16:21000001, elapsed 3.6s, est remaining 1.2s, peak mem 2195MB, user 7.6s, sys 103.0s, output queue size 20
progress 80% @chr18:8000001, elapsed 3.8s, est remaining 1.0s, peak mem 2213MB, user 8.0s, sys 110.0s, output queue size 8
progress 85% @chr20:29000001, elapsed 4.1s, est remaining 0.7s, peak mem 2258MB, user 8.4s, sys 117.0s, output queue size 8
progress 90% @chrX:43000001, elapsed 4.6s, est remaining 0.5s, peak mem 2744MB, user 12.7s, sys 120.3s, output queue size 114
progress 95% @chrY:44000001, elapsed 4.8s, est remaining 0.3s, peak mem 2759MB, user 16.6s, sys 122.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 8.5s, est remaining 0.0s, peak mem 2765MB, user 33.8s, sys 125.4s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047059
output file size: 93248821
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.010 user 0.006 sys 0.020 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.003 sys 0.022 real
ReadQualCal::init: 1 calls 0.001 user 0.009 sys 0.006 real
advance: 3219322 calls 1.698 user 16.033 sys 17.226 real
done: 1 calls 0.230 user 1.000 sys 1.237 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.002 sys 8.561 real
fetch: 3219323 calls 0.278 user 15.846 sys 14.255 real
fetch_reads: 3219322 calls 0.344 user 15.982 sys 14.381 real
fetch_ref: 13004 calls 0.034 user 0.021 sys 0.070 real
fetch_vcf: 13004 calls 1.548 user 0.152 sys 1.734 real
idle: 1785 calls 1.500 user 0.374 sys 158.372 real
init: 1 calls 0.007 user 0.003 sys 0.029 real
update: 13229 calls 9.168 user 0.991 sys 11.147 real
write: 3219323 calls 13.691 user 16.017 sys 29.560 real
overall: 2899664896 mem 39.912 user 127.372 sys 10.866 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.000 sys 0.028 real
done: 1 calls 0.059 user 0.000 sys 0.059 real
idle: 61 calls 0.002 user 0.000 sys 31.403 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81883136 mem 0.091 user 0.022 sys 1.056 real