File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/1a2474e91bb58ec86602357fa7a298/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-14f9eqat because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:54,128 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:54,989 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:55,159 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:56,196 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:56,267 - cnv_pipe.batch.run_model - INFO - Processing cluster 935 with 200 probes
2026-06-08 22:23:56,635 - cnv_pipe.batch.run_model.cluster935 - INFO - Child process started for cluster 935 with 200 probes
2026-06-08 22:24:55,239 - cnv_pipe.batch.run_model.cluster935 - INFO - Child process finished cluster 935. Wrote cluster_935_samples.csv and cluster_935_params.csv
2026-06-08 22:24:55,240 - cnv_pipe.batch.run_model - INFO - Cluster 935 finished in 58.97 seconds. Status: SUCCESS