File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/585baff801e9bbfa13e13c0695e307/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gu7lt4e6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:21,523 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:22,312 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:22,482 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:23,463 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:23,626 - cnv_pipe.batch.run_model - INFO - Processing cluster 706 with 191 probes
2026-06-08 22:23:24,009 - cnv_pipe.batch.run_model.cluster706 - INFO - Child process started for cluster 706 with 191 probes
2026-06-08 22:24:21,920 - cnv_pipe.batch.run_model.cluster706 - INFO - Child process finished cluster 706. Wrote cluster_706_samples.csv and cluster_706_params.csv
2026-06-08 22:24:21,921 - cnv_pipe.batch.run_model - INFO - Cluster 706 finished in 58.29 seconds. Status: SUCCESS