File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/84cb12bec317edcff745d7fa4a9b8a/.command.log
Size
63.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/84cb12bec317edcff745d7fa4a9b8a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/84cb12bec317edcff745d7fa4a9b8a/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXbYqghy/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXbYqghy/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXbYqghy/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T22:19:24.400770Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:24.401760Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:24.401769Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:24.401773Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:24.401777Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXbYqghy'
[2026-06-08T22:19:24.401781Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:24.401786Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:24.401790Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:24.401793Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:24.401797Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:24.401801Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:24.401805Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:24.401808Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:24.401812Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:24.402492Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:24.402607Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:24.408480Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:24.409394Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:24.409562Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:24.409978Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:24.410257Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.410600Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.410691Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.410763Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.410880Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.410948Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411074Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411138Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411256Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411321Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411432Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411500Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411827Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.412208Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.412398Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.412601Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.412796Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.413447Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.413916Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.416856Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.417131Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:24.417382Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.417648Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.417867Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.418466Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.418695Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419043Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419112Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419223Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419289Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419400Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419468Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419587Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419650Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419762Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419827Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.419936Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.420002Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.420226Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.420632Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.421036Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.421098Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.421209Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.421274Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.421888Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.421951Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.422070Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.422298Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.423629Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424037Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424155Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424218Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424330Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424394Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424507Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424568Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424683Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424750Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424858Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.424920Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.425031Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.425219Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.425942Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.426007Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.426112Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.426184Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440070Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440175Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440244Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440419Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440492Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440577Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440639Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440745Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.440818Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.442220Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:24.458553Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.459226Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.459462Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.459792Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.460594Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.461285Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.462250Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.463500Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.464456Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.468231Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:24.473132Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:24.481032Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:24.485287Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:24.485570Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:24.486267Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:24.486885Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:24.588180Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.588280Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.589115Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.589478Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.594180Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:24.595638Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:25.608209Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.609025Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.613277Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:26.048327Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:26.075403Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.075518Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.076364Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.076664Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081339Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:26.082243Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:26.141729Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.142738Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.146230Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:26.159168Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.160260Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.163795Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:26.274814Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.275928Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.279454Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:26.284065Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.284996Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.287917Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:26.349034Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.350285Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.354231Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:26.715825Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.716844Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.720590Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:26.782608Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.783862Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.787875Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:26.999188Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.000048Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.003150Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:27.616234Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.617057Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.620285Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:27.681786Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.682827Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.686024Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:27.747572Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.748417Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.751889Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:27.913878Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.914842Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.918708Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:27.979626Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.979753Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.980892Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.981317Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.984741Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:27.985593Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:28.045603Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.045682Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.046794Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.047170Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.051684Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:28.262855Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.263798Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.267277Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:28.328253Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.329009Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.332482Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:28.394189Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.394955Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.399044Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:29.061973Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.062086Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.062786Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.063089Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.067646Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:29.068942Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:29.128877Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.129015Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.129673Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.129994Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.133589Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:29.135535Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:29.196864Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.197000Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.197658Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.198000Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.202280Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:29.203866Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:29.264893Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.265640Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.269245Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:29.531482Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.532115Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.535363Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:29.596587Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.597338Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.600865Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:30.063632Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.064402Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.068058Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:30.129660Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.130616Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.134544Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:30.188816Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:30.195639Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.195738Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.195774Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.196409Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.196861Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.197109Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.201204Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:30.202802Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:30.204059Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:30.206869Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.207494Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.210408Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:30.239875Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.239980Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.240615Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.241332Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.245698Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:30.246675Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:30.260477Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.261179Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.265513Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:30.277418Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.277518Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.278120Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.278412Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.282534Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:30.283605Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.284008Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:30.284670Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.287839Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:30.349580Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.349691Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.349738Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.350361Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.351066Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.351922Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.355282Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:30.357869Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:30.359168Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:30.421228Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.421378Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.421917Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.422236Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.425865Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:30.427187Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:30.488868Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.488972Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.255683Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.256441Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.260789Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:31.371817Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.372684Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.376402Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:31.437324Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.501538Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.502255Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.506718Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:31.617135Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.032150Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.032911Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.036541Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:32.097770Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.362439Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.363075Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.367089Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:32.427820Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.843407Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.843979Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.847459Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:32.909125Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.477841Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.478522Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.481734Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:34.543319Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.543792Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.544058Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.544464Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.545389Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.548421Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.551176Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:34.552325Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.611916Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.612022Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.612048Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.612346Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.612685Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.616120Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.645193Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.646430Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.646506Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.646808Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.650687Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:34.679380Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.994301Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:43.290444Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:43.290444Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] 
[2026-06-08T22:19:43.290444Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:43.290561Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] 
[2026-06-08T22:19:43.290568Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:43.290575Z] [nf-0484cb12bec317edcff745d7fa4a9b8a-2b234-t9ztl] [626_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec