[2026-06-08T22:19:21.229476Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:21.235452Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:21.235470Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:21.235476Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:21.235481Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXwdFfiW'
[2026-06-08T22:19:21.235488Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:21.235494Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:21.235512Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:21.235516Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T22:19:21.235521Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:21.235527Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:21.235531Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:21.235537Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:21.235542Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:21.236149Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:21.236316Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:21.244880Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:21.245543Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:21.245896Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:21.246168Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:21.246528Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.247083Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.247200Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.247292Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.247440Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.247523Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.248277Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.248504Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.248645Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.249274Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.249586Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.250570Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.252437Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.252644Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:21.253024Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.253135Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.253286Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.253373Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.253610Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.253956Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.254209Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.254302Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.254448Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.254536Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.254677Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.254759Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.254908Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.255010Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.255342Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.255633Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.255815Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.255927Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.256074Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.256151Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.256289Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.256368Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.256514Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.256595Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.257046Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.257341Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.257484Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.257564Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.257709Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.257788Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.257947Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.258030Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.258177Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.258318Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.258660Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259117Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259255Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259339Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259472Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259551Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259687Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259767Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259908Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259990Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.260227Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.260904Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.261124Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.261224Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.261377Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.261466Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.261608Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.261699Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.261863Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.262018Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.263741Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.264318Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.264472Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.264553Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.264694Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.264776Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.266942Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.267645Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.267815Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.267918Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.268092Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.268175Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.268317Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.268395Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.268540Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.268621Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.269036Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.269702Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.269858Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.269958Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.270098Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.270178Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.270321Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.270404Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.270539Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.270619Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.270879Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.271689Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.271836Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.271917Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.290797Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.291620Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.291766Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.292183Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.293303Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.293366Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.293583Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.293946Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.294381Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.294862Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.295429Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.295724Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.296542Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.297474Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.297747Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.298637Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:21.298911Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.299291Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:21.300541Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.307808Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:19:21.311479Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:21.315456Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:21.317700Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:21.317997Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:21.320778Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:19:21.324045Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:21.325032Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:21.388419Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.388509Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.388545Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.389661Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.390245Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.390795Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.396394Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:21.396609Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:21.400218Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.400296Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.401424Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.401622Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.406019Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:19:22.718244Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.718353Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.720121Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.720556Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.724688Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:19:22.725719Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:22.784749Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.786324Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.786709Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.789461Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.789906Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:22.792597Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:19:22.853669Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.854802Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.857831Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:22.886799Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.887928Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.890468Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:19:23.506332Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:19:23.552917Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.552998Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.554140Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.554414Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.557414Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:23.558327Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:19:23.586511Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.587619Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.589918Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:23.619352Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.620458Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.623062Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:19:23.834623Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.835841Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.838469Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:23.899742Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.900861Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.903480Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:23.964694Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.965728Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.968771Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:24.079734Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.080825Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.083552Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:24.112661Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.113743Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.116727Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:19:24.177665Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.178810Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.181434Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:24.453752Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:24.493265Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.493358Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.495307Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.495783Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.499569Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:24.500944Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:19:24.560557Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.561698Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.564653Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:19:24.625821Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.626975Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.629699Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:24.690987Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.692071Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.696013Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:19:24.806716Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.807804Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.810653Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:19:24.871737Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.872785Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.876266Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:19:25.287659Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.288828Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.291985Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:25.353065Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.354163Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.357527Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:26.170153Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.171839Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.175148Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:26.787393Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.788418Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.791774Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:26.852672Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.853838Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.857102Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:26.870201Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.871386Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.874873Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:19:26.935928Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.936929Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.939883Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:27.001141Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.002253Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.005205Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:27.066310Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.067416Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.070939Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:19:27.131864Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.132952Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.136597Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:27.197257Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.198343Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.206985Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:27.267820Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.268874Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.272502Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:19:27.333438Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.334987Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.338170Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:27.399490Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.400920Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.404573Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:19:27.465339Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.466816Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.470733Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:19:27.531235Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.532648Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.536254Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:27.597016Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.597131Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.598468Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.598931Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.602688Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:27.603400Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:19:27.664370Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.664448Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.665386Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.665747Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.669663Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:19:27.670949Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:27.780650Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.782118Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.785486Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:19:27.846679Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.846770Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.847708Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.848362Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.851911Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:19:27.853356Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:27.882377Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.883719Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.886681Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:19:27.947873Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.947985Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.949658Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.950046Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.953931Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:19:28.616759Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.617685Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.620970Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:28.681791Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.682733Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.686071Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:19:28.699112Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.700321Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.704111Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:19:28.915350Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.916762Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.919818Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:28.981159Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.982472Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.985550Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:19:29.014819Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.016014Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.019070Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:29.019862Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.020603Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.023905Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:19:29.084745Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.085715Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.088396Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:29.093418Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.094428Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.097441Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:29.126580Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.128166Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.128540Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.130645Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.134091Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:19:29.135356Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:19:29.697443Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.698645Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.701968Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:19:29.763119Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.764684Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.768516Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:29.829428Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.829527Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.830701Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.831227Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.834953Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:19:29.836082Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:19:29.895955Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.896754Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.899627Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:19:30.011112Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.011882Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.015593Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:30.126048Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.126850Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.130378Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:30.241378Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.242180Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.244958Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:30.306135Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.306903Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.309459Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:19:30.371001Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.372157Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.374833Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:19:30.436298Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.437390Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.440754Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:30.501878Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.502976Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.506352Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:19:31.118552Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.119330Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.122812Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:19:31.151587Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.152380Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.155401Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:19:31.156398Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.157117Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.159749Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:19:31.189068Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.189784Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.192481Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:19:31.253803Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.254501Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.257581Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:19:31.318871Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.884099Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.884757Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.888172Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:19:31.949167Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.364231Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.365227Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.368632Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:19:32.429875Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.431651Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:32.434117Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.434170Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.434848Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.435466Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.438486Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:19:32.439366Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:32.467475Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.468285Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.470807Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:19:32.484040Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.484111Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.516688Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.881608Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.882438Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.885756Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:19:32.946759Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.115317Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.116193Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.118911Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:19:40.180012Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.180375Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.180536Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.180823Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.181390Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.185623Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:40.187364Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:40.188363Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:40.245852Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.245924Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.245954Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.246207Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.246423Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.249305Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:40.250317Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:40.310415Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.310504Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.310801Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:40.313291Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:40.342755Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:54.462469Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:20:09.354754Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:20:09.354754Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] 
[2026-06-08T22:20:09.354754Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:20:09.354817Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] 
[2026-06-08T22:20:09.354826Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:20:09.354834Z] [nf-a5196d089fe141cd7387374d5cefb524-163c0-ct7tf] [730_1] [WorkflowRunner] Elapsed time for full workflow: 48 sec