Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/347a990c4dc2260902c52ed36ab6f0/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/81816b54ab7484624d9fee8b6881d3/HCC1395_BL.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/347a990c4dc2260902c52ed36ab6f0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/81816b54ab7484624d9fee8b6881d3/HCC1395_BL.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.1s, est remaining 1.0s, peak mem 99MB, user 1.2s, sys 0.0s, output queue size 20
progress 10% @chr2:75000001, elapsed 0.1s, est remaining 0.9s, peak mem 99MB, user 2.7s, sys 0.1s, output queue size 26
progress 15% @chr2:231000001, elapsed 0.2s, est remaining 0.9s, peak mem 99MB, user 4.0s, sys 0.2s, output queue size 4
progress 20% @chr3:155000001, elapsed 0.2s, est remaining 0.8s, peak mem 99MB, user 5.4s, sys 0.3s, output queue size 14
progress 25% @chr4:117000001, elapsed 0.2s, est remaining 0.7s, peak mem 99MB, user 6.9s, sys 0.3s, output queue size 5
progress 30% @chr5:88000001, elapsed 0.3s, est remaining 0.7s, peak mem 99MB, user 8.5s, sys 0.4s, output queue size 1
progress 35% @chr6:63000001, elapsed 0.3s, est remaining 0.6s, peak mem 99MB, user 9.8s, sys 0.4s, output queue size 2
progress 40% @chr7:55000001, elapsed 0.4s, est remaining 0.6s, peak mem 99MB, user 11.2s, sys 0.5s, output queue size 11
progress 45% @chr8:57000001, elapsed 0.4s, est remaining 0.5s, peak mem 99MB, user 12.7s, sys 0.5s, output queue size 5
progress 50% @chr9:71000001, elapsed 0.5s, est remaining 0.5s, peak mem 99MB, user 14.1s, sys 0.6s, output queue size 2
progress 55% @chr10:95000001, elapsed 0.5s, est remaining 0.4s, peak mem 99MB, user 15.7s, sys 0.6s, output queue size 3
progress 60% @chr11:121000001, elapsed 0.6s, est remaining 0.4s, peak mem 99MB, user 17.1s, sys 0.7s, output queue size 25
progress 65% @chr13:12000001, elapsed 0.6s, est remaining 0.3s, peak mem 99MB, user 18.6s, sys 0.7s, output queue size 3
progress 70% @chr14:60000001, elapsed 0.7s, est remaining 0.3s, peak mem 99MB, user 20.1s, sys 0.8s, output queue size 1
progress 75% @chr16:12000001, elapsed 0.7s, est remaining 0.2s, peak mem 99MB, user 21.7s, sys 0.8s, output queue size 1
progress 80% @chr18:2000001, elapsed 0.8s, est remaining 0.2s, peak mem 99MB, user 23.1s, sys 0.9s, output queue size 10
progress 85% @chr20:21000001, elapsed 0.8s, est remaining 0.1s, peak mem 99MB, user 24.4s, sys 0.9s, output queue size 1
progress 90% @chrX:35000001, elapsed 0.9s, est remaining 0.1s, peak mem 138MB, user 25.5s, sys 1.1s, output queue size 114
progress 95% @chrY:26000001, elapsed 0.9s, est remaining 0.0s, peak mem 147MB, user 26.9s, sys 1.2s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.2s, est remaining 0.0s, peak mem 150MB, user 28.7s, sys 1.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 51395350
reads: 1001089
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.106 user 0.663 sys 1.823 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.002 sys 1.167 real
idle: 75 calls 0.009 user 0.003 sys 36.255 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 157392896 mem 29.242 user 1.594 sys 2.314 real