.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/2c6cb864af49f1dbacb3575632ce57/.command.log
Size: 87.4 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/2c6cb864af49f1dbacb3575632ce57/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/2c6cb864af49f1dbacb3575632ce57/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/b9327ccd07f95c93afdb2eed727086/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/b9327ccd07f95c93afdb2eed727086/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:27.434394Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:27.434944Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:27.434955Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:27.434961Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:27.434967Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX8x28jc'
[2026-06-08T22:19:27.434972Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:27.434979Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:27.434984Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:27.434988Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T22:19:27.434997Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:27.435002Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:27.435007Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:27.435014Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:27.435019Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:27.435522Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:27.435637Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:27.443373Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:27.444150Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:27.444408Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:27.444650Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:27.444849Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.445408Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.445524Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.445617Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.446284Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.446495Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.446626Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.447599Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.447962Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.448365Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.450436Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.450885Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:27.451354Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.451519Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.451785Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.451891Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.452175Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.452460Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.452604Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.452684Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.452934Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.453018Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.453158Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.453241Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.453380Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.453515Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.453961Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454049Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454194Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454277Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454415Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454496Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454648Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454725Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454872Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.455083Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.455530Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.455610Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.455804Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.455893Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.456032Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.456108Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.456249Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.456331Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.456467Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.456598Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.457019Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.457512Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.457669Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.457758Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.457916Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.458000Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.458141Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.458218Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.458359Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.458597Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459187Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459269Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459404Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459482Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459623Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459702Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459842Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459922Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.460055Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.460178Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.460628Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.461165Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.461332Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.461413Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.461549Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.461631Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.461765Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.461862Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.463984Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.464716Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.464892Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.464989Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.465150Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.465237Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.465393Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.465476Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.465632Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.465752Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.466315Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.467228Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.467395Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.467502Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.467660Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.467761Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.467923Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.468012Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.468174Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.468563Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.469703Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.469839Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.486079Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.486239Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.486333Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.486631Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.486720Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.486958Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.487045Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.487211Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.487298Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.487363Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:27.488687Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.490257Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.491397Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.493243Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.497650Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.498593Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:19:27.501714Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:19:27.504399Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.505224Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.505401Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:27.509671Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:19:27.510397Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.514071Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:19:27.516918Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.517272Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:19:27.522041Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:27.523401Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:19:27.833341Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.834696Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.838057Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:19:28.300215Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.301679Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.305349Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:19:29.017715Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.017826Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.019671Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.020028Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.024125Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:19:29.024962Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:29.084958Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.087018Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.090287Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:19:29.451936Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.453243Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.457102Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:19:29.568075Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.569387Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.572820Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:30.135075Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.136498Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.139994Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:19:30.168789Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.170028Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.172330Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.173309Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:19:30.173947Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.177440Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:30.288663Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.288764Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.289933Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.290327Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.295013Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:19:30.296351Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:30.455983Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.457177Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.460099Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:19:30.521535Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.522770Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.526794Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:30.737766Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.739056Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.741922Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:19:30.803092Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.804950Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.808459Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:19:31.270307Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.271535Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.274592Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:31.886941Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.888693Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.892212Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:31.953329Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.955183Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.958173Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:19:31.963211Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.964835Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.968442Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:19:31.997539Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.999269Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.002419Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:19:32.031671Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.033482Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.036833Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:19:32.097869Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.099642Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.102842Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:19:32.164001Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.165830Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.168999Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:19:32.230345Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.232108Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.235392Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:32.296635Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.298590Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.301825Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:32.713779Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.714895Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.718122Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:19:32.779271Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.780458Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.783962Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:19:32.844726Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.846430Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.849951Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:19:32.961091Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.962235Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.965583Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:19:33.127824Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.130107Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.133270Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:33.194499Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.194592Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.196152Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.196789Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.200185Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:33.201094Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:19:33.261503Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.262631Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.265633Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:33.278622Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.279727Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.283038Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:33.311698Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.312906Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.315202Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.316469Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.316692Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:33.320020Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:19:33.681469Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.682538Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.685747Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:19:33.746849Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.747950Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.751320Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:19:34.313215Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.314247Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.317605Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:34.378484Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.378567Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.379568Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.379813Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.382684Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:34.411601Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:34.412555Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.413690Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.413943Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.416239Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.416507Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:19:34.419825Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:19:34.448723Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.449729Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.452603Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:34.457560Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.458423Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.461306Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:34.474499Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.475435Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.478513Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:19:34.507600Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.508519Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.511376Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:34.823184Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.824295Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.827754Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:19:35.089434Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.090951Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.094015Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:19:35.155478Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.157038Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.160308Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:19:35.472180Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.473663Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.476701Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:19:35.505979Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.507336Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.510254Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:19:35.621679Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.623090Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.626015Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:35.687208Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.688584Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.692145Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:35.803506Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.804447Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.807686Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:19:35.918955Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.919884Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.922737Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:19:35.983863Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.984752Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.988122Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:35.992639Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.993446Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.996599Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:19:36.001647Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.002479Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.005627Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:19:36.567751Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.569005Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.572222Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:19:36.783770Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.784629Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.787793Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:19:36.816569Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.817373Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.820520Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:19:36.825329Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.826484Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.829602Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:19:36.858509Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.859336Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.861966Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:19:36.923304Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.924105Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.926991Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:36.956103Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.956844Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.959390Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:19:36.988689Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.989524Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.992070Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:37.005226Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.006007Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.009092Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:19:37.021838Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.022578Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.024693Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.025604Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.025943Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:37.028612Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:19:37.041542Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.042221Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.044819Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:19:37.057874Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.058530Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.060188Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.060920Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.061089Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:37.063913Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:19:37.076801Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.077749Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.080645Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:19:37.093560Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.094493Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.094771Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.097674Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.098215Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:37.100509Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:19:37.161710Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.161787Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.161843Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.162470Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.162736Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.162929Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.166747Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:37.168184Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:19:37.169616Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:37.227699Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.227798Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.228575Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.231220Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:19:37.260332Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.524822Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.524897Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.525556Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.525929Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.529716Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:19:37.561861Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:19:37.590554Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.590674Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.055982Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.056808Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.059409Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:19:38.088745Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.088836Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.089725Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.092611Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:19:38.153704Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.186026Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.186886Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.189257Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:19:38.250768Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.415244Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.416156Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.419285Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:38.448373Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.448903Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.449109Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.449443Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.449755Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.455101Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:38.456753Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:38.457763Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:38.481981Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.482356Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.485301Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:38.486117Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.486197Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.486507Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.488818Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:38.518242Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.518319Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.518582Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.521342Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:38.550435Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:46.419825Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:20:00.554053Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:20:00.554053Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] 
[2026-06-08T22:20:00.554053Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:20:00.554150Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] 
[2026-06-08T22:20:00.554158Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:20:00.554167Z] [nf-e52c6cb864af49f1dbacb3575632ce57-bcd0f-5pnjc] [724_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec