File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/1f0225f8b8cc00d1b9d96b591bf22e/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-08T22:19:26.069768Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:26.071002Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:26.071032Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:26.071038Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:26.071043Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXxCRg0x'
[2026-06-08T22:19:26.071047Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:26.071054Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:26.071058Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:26.071061Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:26.071065Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:26.071068Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:26.071072Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:26.071075Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:26.071079Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:26.072133Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:26.072203Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:26.078488Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:26.079401Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:26.079816Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:26.080022Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:26.080353Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081078Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081172Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081244Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081359Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081434Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081594Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081659Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.081835Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082017Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082126Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082189Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082443Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082830Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082980Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.083286Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.083363Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.083921Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.084506Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.087124Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.087766Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:26.087847Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.088286Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.088659Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.088902Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.088995Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.089622Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.089941Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.090444Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.090589Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.090775Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.090878Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.091063Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.091156Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.091370Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.091619Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.092170Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.092641Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.092795Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.092869Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.092986Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.093050Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.093164Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.093228Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.093344Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.093411Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.093527Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.093940Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094418Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094485Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094592Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094659Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094767Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094828Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094940Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.095002Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.095111Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.095175Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.095277Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.095344Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.095655Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.096116Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.096229Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.096292Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.110431Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.110537Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.110611Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.110808Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.110909Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.111024Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.111113Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.111263Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.111352Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.111420Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:26.121869Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.122559Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.124862Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.127177Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.127640Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:26.128096Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.130406Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.132836Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:26.134240Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:26.134408Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.136133Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.137660Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.137994Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:26.142585Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:26.143706Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:26.147003Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:26.148696Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:26.254637Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.254753Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.254787Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.255570Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.255939Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.256205Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.261470Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:26.262980Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:26.264578Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:26.322233Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.323060Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.327311Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:26.356361Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.357145Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.360457Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:26.572458Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.573365Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.577072Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:26.688511Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.689947Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.693479Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:26.754797Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.755840Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.759396Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:27.171552Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.172412Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.175979Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:27.287540Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.288453Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.291622Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:27.353078Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.353184Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.353915Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.354338Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.357684Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:27.359699Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:27.419042Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.420135Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.423645Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:27.485374Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.486268Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.489845Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:27.551497Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552292Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.555717Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:27.584894Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.585912Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.589701Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:27.618904Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.619657Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.622516Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:27.653299Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.654067Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.657273Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:27.657818Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.658562Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.661436Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:27.722897Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.722996Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.723621Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.723920Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.728878Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:27.729703Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:27.840106Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.840890Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.844208Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:27.873313Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.874204Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.877056Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:27.890263Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.890897Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.894252Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:27.923572Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.924281Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.927705Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:27.932608Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.933249Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.936370Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:28.298608Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.299594Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.303075Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:28.364376Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.365172Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.368769Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:28.429953Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.430061Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.430836Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.431571Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.434969Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:28.436673Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:28.496491Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.497172Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.500630Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:28.561764Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.562564Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.565676Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:28.627257Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.627898Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.631605Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:28.693432Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.694107Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.697162Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:28.726762Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.727533Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.731177Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:28.743870Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.744632Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.747771Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:28.777022Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.777742Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.781079Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:28.786263Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.786336Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.786899Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.787182Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.790719Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:28.791952Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:28.852353Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.852496Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.852539Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.853098Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.853466Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.853805Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.857862Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:28.860210Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:28.861495Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:28.918904Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.919042Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.919600Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.924044Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.925143Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:28.927625Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:28.989198Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.989324Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.989885Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.990631Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.994467Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:28.995747Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:29.055910Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.056536Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.059772Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:29.121406Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.121997Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.125051Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:29.186529Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.401875Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.402455Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.405623Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:29.466993Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.467114Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.467604Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.471380Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:29.532573Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.098097Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.098654Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.101881Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:30.163584Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.378363Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.379080Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.382313Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:30.443895Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.759168Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.759801Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.763442Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:30.824284Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.888802Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.888909Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.889421Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.890006Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.893431Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:30.894311Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:30.954739Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.954839Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.955107Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.955274Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.955997Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.956523Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.961374Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:30.961857Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:30.962571Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:30.990718Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.991073Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.991906Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.994475Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:30.997029Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.997287Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.000194Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:31.029655Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.029753Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.030004Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.032940Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:31.094772Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.760698Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:36.638207Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:36.638207Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] 
[2026-06-08T22:19:36.638207Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:36.638290Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] 
[2026-06-08T22:19:36.638296Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:36.638303Z] [nf-6f1f0225f8b8cc00d1b9d96b591bf22e-7abbf-84bdn] [612_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec