Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/29bbcc9d8cb688b0e8a287a2f08029/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/29bbcc9d8cb688b0e8a287a2f08029/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:20.031871Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:20.032997Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:20.033024Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:20.033029Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:20.033033Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9aNs0Q'
[2026-06-08T22:19:20.033037Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:20.033042Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:20.033045Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:20.033049Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:20.033052Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:20.033056Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:20.033059Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:20.033063Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:20.033067Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:20.033885Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:20.033988Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:20.039730Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:20.040289Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:20.040580Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:20.040848Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:20.041016Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.041452Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.041872Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.041960Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.042233Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.042703Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.044950Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.045270Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:20.045514Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.045766Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046115Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046367Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046523Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046589Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046709Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046776Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046888Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.046974Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.047111Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.047178Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.047363Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.047512Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.048182Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.048470Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.048735Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.048962Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049085Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049149Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049257Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049326Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049434Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049517Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049663Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049730Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049843Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.049906Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.050105Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.050425Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.050538Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.050609Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.050823Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.050889Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.051008Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.051075Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.051899Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.052266Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.052384Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.052519Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.052637Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.052704Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.052822Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.052887Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.053030Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.053095Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.053234Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.053360Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.053922Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.053985Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054091Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054164Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054278Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054344Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054463Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054525Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054632Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.054698Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.070387Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.070582Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.071300Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.071515Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.071608Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.071703Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.071775Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.071882Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.072997Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:20.073237Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:20.081171Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.081783Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.082046Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.082799Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.085185Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:20.085296Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.086039Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.086473Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.088913Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.089873Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:20.091486Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.099145Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:20.100256Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:20.106672Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:20.107801Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:20.111976Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:20.112866Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:20.219055Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.219949Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.224093Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:21.189286Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.190478Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.194428Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:21.255551Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.256481Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.259625Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:21.289303Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.290154Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.293443Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:21.298487Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.299417Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.303182Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:21.331804Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.332678Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.336269Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:21.349159Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.350348Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.353626Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:21.415030Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.415945Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.419508Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:21.782145Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.783452Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.787042Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:21.816032Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.816932Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.820288Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:21.833513Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.834429Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.837807Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:21.866952Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.867655Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.870947Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:21.900580Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.901446Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.904387Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:21.965743Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.966556Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.970028Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:22.081490Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.082301Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.085965Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:22.348110Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.349079Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.352673Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:22.413903Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.414819Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.418083Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:22.881272Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.882147Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.885540Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:22.947296Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.948342Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.951729Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:23.013344Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.014258Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.017344Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:23.078999Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.079818Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.083516Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:23.088391Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.089127Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.091855Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:23.121438Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.122207Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.125638Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:23.186975Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.187857Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.191471Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:23.252486Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.253296Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.257057Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:23.418732Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.419584Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.431738Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:23.493172Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.494017Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.497407Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:23.659293Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.660103Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.663421Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:23.725074Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.725940Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.730002Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:24.041864Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.041984Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.042784Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.043872Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.047764Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:24.049206Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:24.110937Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.111063Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.112021Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.112489Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.116591Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:24.117690Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:24.177610Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.177706Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.178575Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.179379Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.182588Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:24.183717Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:24.245290Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.245423Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.246347Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.246827Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.250565Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:24.251630Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:24.263280Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.263956Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.266480Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:24.297352Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.298151Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.301577Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:24.302174Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.302690Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.305213Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:24.366814Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.366889Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.367565Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.367962Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.371472Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:24.372556Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:24.434461Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.434561Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.435176Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.436018Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.439262Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:24.440410Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:24.502160Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.503018Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.507099Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:24.568293Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.568960Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.572434Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:24.577210Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.577773Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.580728Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:24.792469Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.793128Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.796336Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:24.908318Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.908987Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.912035Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:24.973473Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.974364Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.978971Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:25.039249Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.655695Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.656322Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.659662Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:25.721503Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.721619Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.722137Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.725226Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:25.754511Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.755134Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.758625Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:25.771317Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.803257Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.967869Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.968521Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.972126Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:26.033830Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.299296Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.300002Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.303457Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:26.364958Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.830942Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.831543Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.834844Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:26.896398Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.612856Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.613467Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.616730Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:27.678863Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.679192Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.679385Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.680192Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.681237Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.686212Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:27.688264Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:27.689182Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:27.747800Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.747922Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.748327Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.760046Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.760745Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.765422Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:27.766307Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:27.828330Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.828437Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.828737Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.832261Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:27.893645Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.617045Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:38.922100Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:38.922100Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] 
[2026-06-08T22:19:38.922100Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:38.922225Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] 
[2026-06-08T22:19:38.922234Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:38.922242Z] [nf-7a29bbcc9d8cb688b0e8a287a2f08029-4a3cb-lkm6c] [613_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec