File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/0c1cf707d0eb7f13bb34483fbda7f8/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-huurvwas because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:25:37,371 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:25:38,153 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:25:38,320 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:25:39,231 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:25:39,406 - cnv_pipe.batch.run_model - INFO - Processing cluster 1568 with 179 probes
2026-06-08 22:25:39,773 - cnv_pipe.batch.run_model.cluster1568 - INFO - Child process started for cluster 1568 with 179 probes
2026-06-08 22:26:32,746 - cnv_pipe.batch.run_model.cluster1568 - INFO - Child process finished cluster 1568. Wrote cluster_1568_samples.csv and cluster_1568_params.csv
2026-06-08 22:26:32,747 - cnv_pipe.batch.run_model - INFO - Cluster 1568 finished in 53.34 seconds. Status: SUCCESS