cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119920198, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2647
progress 10% @chr2:20012409, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 4712
progress 15% @chr2:189034916, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 15109
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.6s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 5358
progress 25% @chr4:88463532, elapsed 0.2s, est remaining 0.5s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 15608
progress 30% @chr5:146514854, elapsed 0.2s, est remaining 0.5s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 25647
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 35606
progress 40% @chr7:128811800, elapsed 0.3s, est remaining 0.4s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 45080
progress 45% @chr9:2041589, elapsed 0.3s, est remaining 0.4s, peak mem 256MB, user 0.0s, sys 0.0s, output queue size 54456
progress 50% @chr10:31520126, elapsed 0.3s, est remaining 0.3s, peak mem 291MB, user 0.0s, sys 0.1s, output queue size 64398
progress 55% @chr11:48245104, elapsed 0.4s, est remaining 0.3s, peak mem 306MB, user 0.0s, sys 0.1s, output queue size 6198
progress 60% @chr12:21848150, elapsed 0.4s, est remaining 0.3s, peak mem 306MB, user 0.0s, sys 0.1s, output queue size 15746
progress 65% @chr13:48479980, elapsed 0.4s, est remaining 0.2s, peak mem 306MB, user 0.0s, sys 0.1s, output queue size 26804
progress 70% @chr15:42695743, elapsed 0.4s, est remaining 0.2s, peak mem 306MB, user 0.0s, sys 0.1s, output queue size 36830
progress 75% @chr16:30902078, elapsed 0.5s, est remaining 0.2s, peak mem 306MB, user 0.0s, sys 0.1s, output queue size 46399
progress 80% @chr17:42553794, elapsed 0.5s, est remaining 0.1s, peak mem 306MB, user 0.0s, sys 0.1s, output queue size 57089
progress 85% @chr19:5679586, elapsed 0.5s, est remaining 0.1s, peak mem 327MB, user 0.0s, sys 0.1s, output queue size 67503
progress 90% @chr19:55762598, elapsed 0.5s, est remaining 0.1s, peak mem 333MB, user 0.0s, sys 0.1s, output queue size 77000
progress 95% @chr22:36320220, elapsed 0.9s, est remaining 0.0s, peak mem 2527MB, user 7.4s, sys 1.8s, output queue size 3251
progress 100% @chrY:57196336, elapsed 1.0s, est remaining 0.0s, peak mem 2527MB, user 7.6s, sys 1.8s, output queue size 2375
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290604
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2.065 user 0.094 sys 2.561 real
done: 1 calls 0.300 user 0.100 sys 0.400 real
execute: 1 calls 0.003 user 0.011 sys 0.973 real
fetch_reads: 208647 calls 0.101 user 0.000 sys 0.167 real
fetch_ref: 2072 calls 0.030 user 0.008 sys 0.018 real
fetch_vcf: 2072 calls 1.058 user 0.036 sys 1.136 real
idle: 91 calls 0.002 user 0.000 sys 31.710 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 5.502 user 1.655 sys 7.652 real
overall: 2650558464 mem 11.467 user 5.518 sys 2.414 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory