File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/71f98c0e9182d730c891bfb7471b51/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-co07c43t because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:25:11,715 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:25:12,515 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:25:12,683 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:25:13,605 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:25:13,757 - cnv_pipe.batch.run_model - INFO - Processing cluster 1409 with 194 probes
2026-06-08 22:25:14,138 - cnv_pipe.batch.run_model.cluster1409 - INFO - Child process started for cluster 1409 with 194 probes
2026-06-08 22:26:10,642 - cnv_pipe.batch.run_model.cluster1409 - INFO - Child process finished cluster 1409. Wrote cluster_1409_samples.csv and cluster_1409_params.csv
2026-06-08 22:26:10,643 - cnv_pipe.batch.run_model - INFO - Cluster 1409 finished in 56.89 seconds. Status: SUCCESS