Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/6ccd1807b66d74c931d3ba3216747a/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/24edc3b8b5c67ed5074786316ec76c/germline_control_1.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/4b17680334a6dd510afd8e028eb912/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/4b17680334a6dd510afd8e028eb912/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/24edc3b8b5c67ed5074786316ec76c/germline_control_1.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/6ccd1807b66d74c931d3ba3216747a/germline_control_1.haplotyper.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   358 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to germline_control_1.dv_only_sites.vcf.gz