Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/d418a9ee96101ea3196d311c3a7ba0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ccadab306ea7ca9352fcccfb1f45d5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ccadab306ea7ca9352fcccfb1f45d5/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-r2h7trbc because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:21:36,271 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:21:37,230 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:21:37,407 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:21:38,438 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:21:38,598 - cnv_pipe.batch.run_model - INFO - Processing cluster 124 with 195 probes
2026-06-08 22:21:38,995 - cnv_pipe.batch.run_model.cluster124 - INFO - Child process started for cluster 124 with 195 probes
2026-06-08 22:22:39,651 - cnv_pipe.batch.run_model.cluster124 - INFO - Child process finished cluster 124. Wrote cluster_124_samples.csv and cluster_124_params.csv
2026-06-08 22:22:39,653 - cnv_pipe.batch.run_model - INFO - Cluster 124 finished in 61.05 seconds. Status: SUCCESS