File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/c7bcf8d7f6965004463c4fdab51607/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-by6r242o because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:41,599 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:42,501 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:42,682 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:43,710 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:43,907 - cnv_pipe.batch.run_model - INFO - Processing cluster 1232 with 184 probes
2026-06-08 22:24:44,300 - cnv_pipe.batch.run_model.cluster1232 - INFO - Child process started for cluster 1232 with 184 probes
2026-06-08 22:25:39,937 - cnv_pipe.batch.run_model.cluster1232 - INFO - Child process finished cluster 1232. Wrote cluster_1232_samples.csv and cluster_1232_params.csv
2026-06-08 22:25:39,938 - cnv_pipe.batch.run_model - INFO - Cluster 1232 finished in 56.03 seconds. Status: SUCCESS