Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/76ca8228cde3317f79295cec09b71d/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/76ca8228cde3317f79295cec09b71d/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:22.686460Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:22.687008Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:22.687020Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:22.687026Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:22.687031Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXuqjLo7'
[2026-06-08T22:19:22.687036Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:22.687042Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:22.687047Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:22.687054Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T22:19:22.687058Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:22.687064Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:22.687068Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:22.687074Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:22.687080Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:22.687544Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:22.687636Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:22.694803Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:22.695464Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:22.695611Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:22.695881Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:22.696124Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.696917Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.697029Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.697120Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.697345Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.697667Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.697750Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.698007Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.698508Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.698806Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.698957Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.700519Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.700890Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:22.701031Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.701402Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.701569Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.701907Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.701991Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.702132Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.702210Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.702430Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.702509Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.702646Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.702726Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.702981Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.703298Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.703462Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.703540Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.703674Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.703756Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.703889Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.703993Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.704129Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.704204Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.704480Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.704866Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705005Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705088Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705225Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705300Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705436Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705513Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705675Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.705808Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.706152Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.706538Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.706680Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.706827Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.706966Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.707046Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.707178Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.707257Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.707390Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.707466Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.707749Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708216Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708352Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708432Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708564Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708642Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708780Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708856Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.708997Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.709075Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.709211Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.709369Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710047Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710128Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710263Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710346Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710482Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710558Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710690Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.710769Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.729891Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.730320Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.730501Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.730580Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.731441Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.731623Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.731788Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.732066Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.732293Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.732655Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.733013Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.733367Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.734052Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.734271Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.734676Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.734951Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.735281Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.735970Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:22.736280Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.740765Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T22:19:22.743750Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:22.746423Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:19:22.748824Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:22.752830Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T22:19:22.756885Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:19:22.758036Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:23.969554Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.970532Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.973759Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:24.085068Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.086363Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.089505Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:19:24.150716Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.151753Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.155336Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T22:19:24.516702Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.517727Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.521309Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:19:24.882810Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.884269Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.887730Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:24.948853Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.949825Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.952748Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T22:19:25.183662Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:25.214204Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.214271Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.215163Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.215522Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.219475Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T22:19:25.220698Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:25.280095Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.280189Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.281078Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.281369Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.285240Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:19:25.287973Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T22:19:25.346251Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.347197Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.350649Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:19:25.611941Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.613262Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.617477Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:25.678138Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.679526Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.683919Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:19:26.095349Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.096715Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.098891Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.099968Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.100273Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:19:26.103312Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:26.132143Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.133111Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.136163Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T22:19:26.136881Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.137771Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.140588Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:26.169943Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.170900Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.174096Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:19:26.178985Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.179863Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.182813Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:26.211777Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.212717Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.215848Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T22:19:26.228812Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.229789Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.232659Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:19:26.245555Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.246438Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.249662Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:26.278507Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.279419Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.282487Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T22:19:26.343577Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.344521Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.347755Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:19:26.376808Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.378610Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.381446Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T22:19:26.394744Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.396550Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.399445Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:26.412723Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.413628Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.417346Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T22:19:26.477972Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.478922Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.482185Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:19:26.894209Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.895130Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.898241Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:19:26.959571Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.960467Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.963889Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:19:26.992577Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.993436Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.996299Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:19:27.057521Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.058432Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.061766Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T22:19:27.573797Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.574775Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.578166Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:19:27.639117Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.640012Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.642993Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T22:19:27.754394Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.755197Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.758489Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T22:19:27.819824Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.820918Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.824274Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:27.985750Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.986961Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.990364Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:28.101753Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.102680Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.106355Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:19:28.217356Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.218177Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.221137Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:19:28.282468Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.283991Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.287283Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:19:28.316425Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.317632Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.320467Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:28.381940Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.383015Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.386543Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:29.048637Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.049783Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.052950Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:29.114232Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.115306Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.118611Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T22:19:29.781311Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.782432Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.785873Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T22:19:29.846816Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.847615Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.850415Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:19:29.911783Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.912544Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.916238Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T22:19:29.977023Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.977779Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.980989Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T22:19:30.009999Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.010729Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.014058Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:30.075139Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.076248Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.079536Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:30.108714Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.109719Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.112594Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:19:30.141998Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.143006Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.145311Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.146494Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.146767Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:30.149622Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:30.210952Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.211191Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.212154Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.212510Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.215483Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T22:19:30.216501Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T22:19:30.276878Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.276974Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.277915Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.278267Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.281364Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:30.282891Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:19:30.342621Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.343596Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.346434Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:30.375621Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.376620Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.379267Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T22:19:30.392559Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.425087Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.639777Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.640854Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.643925Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T22:19:30.705387Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.769862Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.770726Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.774010Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T22:19:30.835109Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.949591Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.950388Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.953323Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:19:31.014625Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.129603Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.130465Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.133390Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:31.194766Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.764197Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.765022Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.767977Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T22:19:33.829356Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.893442Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.894215Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.897432Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:19:33.958593Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.958951Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.959159Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.959408Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.960086Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.965198Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:33.966413Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:33.999578Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:34.025346Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.025430Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.025461Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.025798Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.026145Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.029520Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.030226Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.090607Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.090688Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.090958Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.093976Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:34.122741Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:41.640623Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:55.806044Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:55.806044Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] 
[2026-06-08T22:19:55.806044Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:55.806122Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] 
[2026-06-08T22:19:55.806135Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:55.806144Z] [nf-9276ca8228cde3317f79295cec09b71d-ce341-bms7x] [672_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec