Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/6ccd1807b66d74c931d3ba3216747a/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/0de7e5e272f67db03dc9b6ce2016cf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/0de7e5e272f67db03dc9b6ce2016cf/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/6ccd1807b66d74c931d3ba3216747a/germline_control_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/d673f4154c27aeb069422ed655972b/germline_control_1.forcecall.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/d673f4154c27aeb069422ed655972b/germline_control_1.forcecall.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Writing to /tmp/bcftools.zqCZun
Checking the headers and starting positions of 2 files
Merging 1 temporary files
Done
Cleaning