File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/b5d0cc914c7d697ea70bece5b0050b/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-08T22:19:27.511215Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:27.511945Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:27.511954Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:27.511958Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:27.511963Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBfoMCc'
[2026-06-08T22:19:27.511967Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:27.511971Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:27.511975Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:27.511978Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:27.511982Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:27.511986Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:27.511989Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:27.511993Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:27.511997Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:27.512754Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:27.512892Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:27.519784Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:27.520528Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:27.521101Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:27.521492Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:27.521726Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522363Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522458Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522534Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522653Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522720Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522938Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.523288Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.523410Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.523666Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.523740Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.523862Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.524179Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.524500Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.524570Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.524706Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.524808Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.524961Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.525102Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.525365Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.525608Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.525911Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.528465Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.529283Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:27.529507Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.530034Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.530538Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.530628Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.530747Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.530822Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531018Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531344Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531473Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531535Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531647Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531718Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531829Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.531893Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.532007Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.532072Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.532186Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.532247Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.532388Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.532647Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.533500Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.533881Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534017Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534239Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534364Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534430Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534533Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534598Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534707Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534768Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.534901Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.535143Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.535560Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.535622Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.535728Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.535794Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.535904Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.535963Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.536075Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.536138Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.551661Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.551788Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.551866Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552030Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552104Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552188Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552257Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552366Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552434Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:27.552484Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:27.569162Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.569833Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.571601Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.572247Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.573138Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.576097Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:27.576524Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.577973Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.581326Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:27.581899Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.583176Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.589191Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:27.589687Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:27.593615Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:27.597049Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:27.599226Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:27.601191Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:27.699768Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.699857Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.700619Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.701527Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.707850Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:27.708450Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:27.767215Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.768125Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.772172Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:28.334723Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.335666Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.339659Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:28.551646Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.552497Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.555902Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:28.869004Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.869116Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.869840Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.870129Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.874044Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:28.875619Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:28.935143Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.935946Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.939451Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:28.969434Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.970507Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.973881Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:29.034992Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.035818Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.039320Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:29.100428Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.101237Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.106050Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:29.215936Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.217009Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.220348Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:29.281387Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.282390Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.285808Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:29.798869Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.799809Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.802760Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:29.863862Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.864729Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.868142Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:29.929069Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.929986Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.934908Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:29.994652Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.995555Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.999751Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:30.059835Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.060695Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.064143Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:30.124942Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.125787Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.129339Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:30.190168Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.191030Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.194410Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:30.206890Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.207727Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.211060Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:30.240154Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.240826Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.244299Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:30.405414Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.406186Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.409568Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:30.438617Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.439404Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.443773Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:30.455708Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.455782Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.456494Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.457029Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.460673Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:30.521939Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.522626Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.526048Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:30.586892Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.587695Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.591152Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:30.652238Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.652939Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.656243Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:30.806479Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:30.818169Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.818262Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.818951Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.819528Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.822807Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:30.824482Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:30.883830Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.883929Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.884694Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.885216Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.889286Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:30.890616Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:31.000662Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.000765Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.001538Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.002000Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.005194Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:31.006611Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:31.066650Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.066741Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.067306Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.069094Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.071038Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:31.072920Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:31.133489Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.133597Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.133628Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.134173Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.134952Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.135804Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.139305Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:31.140504Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:31.143488Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:31.204578Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.204651Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.204672Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.205129Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.207473Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.208111Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.211783Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:31.214836Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:31.216492Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:31.217414Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.217977Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.221553Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:31.282360Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.283074Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.287148Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:31.291211Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.291846Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.293959Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.294565Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.296470Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:31.298202Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:31.327161Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.327657Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.330846Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:31.361598Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.361704Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.361731Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.362170Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.362502Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.362932Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.367784Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:31.368066Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:31.369027Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:31.371739Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.403669Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.404111Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.406994Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:31.408117Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.411669Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.411738Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.443716Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.608058Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.608675Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.612022Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:31.673106Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.388978Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.389469Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.392488Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:32.453914Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.518211Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.518672Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.521472Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:32.584350Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.584646Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.584809Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.585602Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.585998Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.589859Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:32.591208Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:32.619074Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:32.650505Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.650593Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.650617Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.650845Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.651507Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.654777Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:32.685308Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:32.716210Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.716294Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.716527Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.719882Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:32.780962Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.195956Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:38.074998Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:38.074998Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] 
[2026-06-08T22:19:38.074998Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:38.075120Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] 
[2026-06-08T22:19:38.075129Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:38.075138Z] [nf-6eb5d0cc914c7d697ea70bece5b0050b-ed955-c87k7] [605_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec