Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/d418a9ee96101ea3196d311c3a7ba0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/6612e61c7e7b0adabc51e96d2ffe33/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/6612e61c7e7b0adabc51e96d2ffe33/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-hbd1xdop because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:44,657 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:45,531 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:45,702 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:46,676 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:46,850 - cnv_pipe.batch.run_model - INFO - Processing cluster 1249 with 141 probes
2026-06-08 22:24:47,215 - cnv_pipe.batch.run_model.cluster1249 - INFO - Child process started for cluster 1249 with 141 probes
2026-06-08 22:25:31,233 - cnv_pipe.batch.run_model.cluster1249 - INFO - Child process finished cluster 1249. Wrote cluster_1249_samples.csv and cluster_1249_params.csv
2026-06-08 22:25:31,234 - cnv_pipe.batch.run_model - INFO - Cluster 1249 finished in 44.38 seconds. Status: SUCCESS