Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/98e4aafe9bfc7479e7dbcc3aa563c3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/98e4aafe9bfc7479e7dbcc3aa563c3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:23.133788Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:23.134715Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:23.134726Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:23.134730Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:23.134735Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXtjOawF'
[2026-06-08T22:19:23.134739Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:23.134744Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:23.134748Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:23.134752Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:19:23.134755Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:23.134759Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:23.134763Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:23.134767Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:23.134771Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:23.135383Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:23.135513Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:23.141505Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:23.142326Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:23.142528Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:23.142810Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:23.143053Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.143368Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.143464Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.143540Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.143739Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.143821Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.143947Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.144013Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.144202Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.144375Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.144798Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.145057Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.145162Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.145825Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.146351Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.146693Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.146920Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.149233Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.149407Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:23.149769Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150099Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150185Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150311Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150385Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150504Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150572Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150744Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150939Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151328Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151397Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151510Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151580Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151690Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151780Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151893Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151958Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.152066Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.152130Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.152256Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.152354Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.152576Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.152800Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.153325Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.153772Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.154239Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.154303Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.154417Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.154483Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.154660Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.154791Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.155112Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.155604Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.155722Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.155786Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.155895Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.155959Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156075Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156153Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156271Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156336Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156450Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156513Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156951Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.157426Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.157543Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.157614Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.157726Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.157789Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.171760Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.171877Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.171951Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.172120Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.172202Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.172295Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.172365Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.173918Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.174024Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.174079Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:23.179487Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.180192Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.180491Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.180827Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.181739Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.182649Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.184371Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.185604Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.186415Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.192104Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:19:23.195009Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:19:23.200378Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:19:23.201968Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:19:23.205903Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:23.210661Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:19:23.210980Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:24.506821Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.507678Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.511374Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:24.572573Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.574052Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.577922Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:25.090902Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:25.140554Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.140661Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.141501Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.141864Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.146181Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:19:25.147609Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:25.207073Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.207167Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.207985Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.208508Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.214490Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:19:25.215499Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:19:25.273196Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.274285Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.277344Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:19:25.338925Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.339035Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.339838Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.340285Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.343909Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:25.344912Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:19:25.372798Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.373740Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.377546Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:25.390399Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.391150Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.394508Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:25.505718Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.506580Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.509754Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:19:25.570913Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.572202Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.576276Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:25.589125Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.589949Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.594102Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:25.654470Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.655183Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.658886Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:25.719881Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.720972Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.725239Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:19:26.036713Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.037603Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.040504Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:26.101954Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.102698Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.105908Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:26.166942Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.167724Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.171401Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:19:26.332776Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.333492Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.336686Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:19:26.448762Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.448874Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.449572Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.450069Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.455325Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:26.456496Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:19:26.516363Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.517249Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.521369Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:26.582408Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.583481Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.587954Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:19:27.200698Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.201631Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.211069Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:19:27.272010Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.272984Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.276553Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:19:27.387830Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.388722Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.392874Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:27.454034Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454170Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.454936Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.455531Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.459721Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:19:27.494016Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:19:27.520856Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.520979Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522018Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.522520Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.527067Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:27.528757Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:19:27.588367Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.589122Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.593070Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:19:27.654763Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.655616Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.659551Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:28.623448Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.624393Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.628408Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:28.657291Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.658066Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.661517Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:28.690749Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.691487Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.695012Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:28.724276Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.725045Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.728558Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:28.729554Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.730174Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.733489Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:19:28.762619Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.763461Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.766921Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:28.767509Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.768017Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.771455Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:19:28.832382Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.833111Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.837061Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:28.898132Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.898285Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.898929Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.899318Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.903167Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:19:28.904610Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:19:28.964194Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.964957Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.968524Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:19:29.029399Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.030039Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.033368Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:19:29.094730Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.095607Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.099677Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:19:29.160517Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.161248Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.165179Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:19:29.225872Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.226651Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.230084Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:19:29.291420Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.292014Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.295643Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:29.406922Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.407512Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.411853Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:19:29.440427Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.440553Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.441164Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.441558Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.445299Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:19:29.446900Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:19:29.506323Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.506485Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.507179Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.510668Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:19:29.571852Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.587954Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.588635Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.592467Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:19:29.653340Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.069056Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.069672Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.073813Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:30.134893Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.252371Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.252917Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.256792Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:19:31.317670Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.382012Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.382547Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.386350Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:19:31.415153Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.415771Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.418133Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.419648Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:19:31.450291Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.016012Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.016575Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.020204Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:19:32.081341Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.081703Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.081932Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.082230Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.082783Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.087462Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:32.089208Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:32.090680Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:32.116093Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.116447Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.118786Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.119487Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.119733Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.120027Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:32.123072Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:32.151922Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.155617Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.155885Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.159393Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:32.220632Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.738966Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:42.024291Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:42.024291Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] 
[2026-06-08T22:19:42.024291Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:42.024382Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] 
[2026-06-08T22:19:42.024389Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:42.024396Z] [nf-2198e4aafe9bfc7479e7dbcc3aa563c3-e884e-dqj9w] [617_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec