Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/c788f3bddbb1207ac821484afb6e53/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/ceed4bf612d62859d876f95d1d2d6f/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/ceed4bf612d62859d876f95d1d2d6f/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/c788f3bddbb1207ac821484afb6e53/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:25.912454Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:25.916215Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:25.916251Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:25.916259Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:25.916266Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX6CNzC4'
[2026-06-08T22:19:25.916272Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:25.916281Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:25.916286Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:25.916291Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T22:19:25.916296Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:25.916302Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:25.916308Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:25.916313Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:25.916320Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:25.916868Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:25.916971Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:25.924127Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:25.924919Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:25.925068Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:25.925281Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:25.925528Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.926231Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.926357Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.926449Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.926606Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.926751Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.927142Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.927308Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.927605Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.928088Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.928323Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.928702Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.930716Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.931072Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:25.931444Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.931584Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.931758Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.931862Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.932025Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.932119Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.932445Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.932832Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933004Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933089Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933230Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933310Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933459Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933543Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933684Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.933841Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.934316Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.934404Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.934552Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.934630Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.934772Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.934850Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.934996Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.935076Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.935219Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.935526Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936002Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936092Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936232Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936312Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936449Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936526Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936669Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936829Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.936994Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.937133Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.937936Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.938071Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.938257Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.938358Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.938519Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.938618Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.938779Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.938968Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.939601Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.939693Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.939849Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.939934Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.940089Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.940176Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.940325Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.940422Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.940708Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.941280Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.942039Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.942135Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.942315Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.942455Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.943325Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.943442Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.945355Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.946160Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.946346Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.946444Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.946588Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.946674Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.946820Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.946900Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.947043Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.947153Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.948158Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.948284Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.948461Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.948561Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.948709Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.948796Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.949274Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.949990Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.950155Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.950249Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.950428Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.950521Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.950687Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.950781Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.970595Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.970979Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.971130Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.971397Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.972591Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.972741Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.972858Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.973345Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.974089Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.974264Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.974817Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.975136Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.976010Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.976967Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.977331Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.978185Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.978447Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.979166Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:25.979774Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.985524Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:19:25.990096Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:19:25.995010Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:25.996931Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:19:25.999903Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:26.003005Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:26.006771Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:26.008140Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:26.121673Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.121766Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.121798Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.122964Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.123370Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.123885Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.129419Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:26.131894Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:26.133137Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:19:26.190823Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.192809Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.197218Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:26.225437Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.226795Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.230776Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:19:26.291453Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.292867Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.296845Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:26.407976Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.409621Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.413246Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:19:26.975211Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.977200Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.980690Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:27.091963Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.094157Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.097183Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:27.158367Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.160079Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.163640Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:19:27.274968Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.276740Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.280175Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:19:27.341196Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.343304Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.347513Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:19:27.708534Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.708647Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.708683Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.709852Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.710248Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.710662Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.713930Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:19:27.716896Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:27.718214Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:19:27.777686Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.777770Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.778901Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.779276Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.783128Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:19:27.784176Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:19:27.843908Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.845113Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.848428Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:19:27.877517Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.878693Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.882441Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:27.993289Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.994491Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.997486Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:28.058699Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.058820Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.060007Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.060265Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.063642Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:28.065119Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:19:28.124845Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.126156Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.129366Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:19:28.841890Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.843782Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.847361Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:19:28.908107Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.909678Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.912934Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:19:29.024344Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.026050Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.029278Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:19:29.140716Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.142386Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.145843Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:19:29.206787Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.208421Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.211834Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:19:29.674095Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.675793Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.679170Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:29.790608Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.792362Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.796350Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:29.906946Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.908425Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.912379Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:29.973422Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.975290Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.979116Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:19:30.190259Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.191767Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.194916Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:19:30.256072Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.257722Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.260606Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:30.322106Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.323752Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.327122Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:31.189688Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.191576Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.194464Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:31.255863Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.256996Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.260544Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:31.321552Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.323161Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.326522Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:19:31.588145Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.589767Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.592822Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:19:31.804441Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.805840Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.809022Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:19:31.870192Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.871670Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.875181Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:19:31.936273Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.937803Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.941019Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:32.002276Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.003801Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.006838Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:19:32.068221Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.069866Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.073579Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:32.134467Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.136071Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.139592Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:32.250543Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.252053Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.255726Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:19:32.316555Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.317965Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.321565Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:32.532713Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.534208Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.537491Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:19:32.598551Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.600065Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.603216Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:19:32.664385Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.665777Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.668827Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:19:32.730038Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.731802Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.735119Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:33.197187Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.198686Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.202328Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:19:33.814568Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.815502Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.818815Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:33.879804Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.880718Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.884119Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:33.944886Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.946360Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.949797Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:34.010609Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.011989Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.015474Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:34.076281Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.077222Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.080034Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:34.141385Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.142296Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.145698Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:19:34.206565Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.207899Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.211047Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:19:34.372526Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.373378Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.376743Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:34.437838Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.438716Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.442199Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:34.553122Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.553202Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.554023Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.554414Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.558241Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:19:34.559560Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:19:34.619050Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.620025Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.623173Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:34.651968Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.652778Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.655875Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:19:34.668679Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.669415Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.672434Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:34.733681Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.734963Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.738503Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:34.849606Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.850589Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.854426Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:34.915098Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.915999Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.918823Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:34.948009Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.948816Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.952237Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:35.013010Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.013100Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.013853Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.014050Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.017438Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:35.018367Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:19:35.078792Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.079582Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.082434Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:35.193700Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.194503Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.197266Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:19:35.258601Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.259347Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.262716Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:19:35.323639Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.324378Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.327410Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:35.356356Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.357466Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.360732Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:19:35.361569Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.362249Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.365339Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:19:35.426247Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.426959Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.429566Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:35.490945Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.491976Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.495390Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:35.606564Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.607809Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.611937Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:35.673359Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.674387Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.677702Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:19:35.738784Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.053772Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.054430Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.057296Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:19:36.118501Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.733786Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.734414Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.737292Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:19:36.798655Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.463857Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.464489Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.468046Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:19:37.528787Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.544861Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.545557Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.548485Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:37.609634Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.873997Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.874594Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:37.877154Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:19:37.938465Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.052594Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.053168Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.055840Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:19:38.117088Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.431553Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.432097Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.434580Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:19:38.495905Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.496275Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.496423Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.496651Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.496985Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.500627Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:38.502004Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:38.503277Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:38.529156Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.529238Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.529581Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.530037Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.533703Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:38.534185Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.534441Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:38.565809Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.565877Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.566087Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:38.568185Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:38.629866Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:44.945794Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:59.035379Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:59.035379Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] 
[2026-06-08T22:19:59.035379Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:59.035454Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] 
[2026-06-08T22:19:59.035462Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:59.035470Z] [nf-09c788f3bddbb1207ac821484afb6e53-2f8e1-r8sdg] [709_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec