cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:155000001, elapsed 0.1s, est remaining 2.2s, peak mem 813MB, user 0.1s, sys 4.2s, output queue size 154
progress 10% @chr3:139000001, elapsed 0.2s, est remaining 2.0s, peak mem 813MB, user 0.2s, sys 13.1s, output queue size 275
progress 15% @chr1:109000001, elapsed 0.3s, est remaining 1.7s, peak mem 813MB, user 0.3s, sys 26.7s, output queue size 437
progress 20% @chr5:2000001, elapsed 0.4s, est remaining 1.5s, peak mem 813MB, user 0.7s, sys 43.4s, output queue size 598
progress 25% @chr5:137000001, elapsed 0.4s, est remaining 1.3s, peak mem 813MB, user 1.1s, sys 62.2s, output queue size 759
progress 30% @chr6:117000001, elapsed 0.5s, est remaining 1.2s, peak mem 813MB, user 1.3s, sys 81.6s, output queue size 921
progress 35% @chr7:132000001, elapsed 0.6s, est remaining 1.1s, peak mem 813MB, user 1.6s, sys 94.1s, output queue size 1083
progress 40% @chr7:121000001, elapsed 0.6s, est remaining 0.9s, peak mem 813MB, user 1.9s, sys 107.8s, output queue size 1245
progress 45% @chr9:60000001, elapsed 0.7s, est remaining 0.8s, peak mem 813MB, user 2.1s, sys 122.5s, output queue size 1279
progress 50% @chr11:36000001, elapsed 0.7s, est remaining 0.7s, peak mem 813MB, user 2.4s, sys 136.2s, output queue size 1441
progress 55% @chr7:52000001, elapsed 0.8s, est remaining 0.6s, peak mem 813MB, user 2.7s, sys 151.8s, output queue size 1603
progress 60% @chr11:18000001, elapsed 0.8s, est remaining 0.6s, peak mem 813MB, user 3.1s, sys 168.0s, output queue size 1764
progress 65% @chr14:93000001, elapsed 0.9s, est remaining 0.5s, peak mem 813MB, user 3.5s, sys 188.1s, output queue size 1926
progress 70% @chr17:32000001, elapsed 1.0s, est remaining 0.4s, peak mem 813MB, user 3.8s, sys 204.2s, output queue size 2088
progress 75% @chr12:46000001, elapsed 1.0s, est remaining 0.3s, peak mem 813MB, user 4.2s, sys 220.7s, output queue size 2249
progress 80% @chr22:9000001, elapsed 1.1s, est remaining 0.3s, peak mem 813MB, user 4.5s, sys 237.6s, output queue size 2411
progress 85% @chr19:56000001, elapsed 1.2s, est remaining 0.2s, peak mem 813MB, user 4.8s, sys 252.4s, output queue size 2572
progress 90% @chr3_KI270779v1_alt:1, elapsed 1.2s, est remaining 0.1s, peak mem 813MB, user 5.1s, sys 271.8s, output queue size 2892
progress 95% @chrX:139000001, elapsed 1.3s, est remaining 0.1s, peak mem 813MB, user 5.5s, sys 291.0s, output queue size 3339
progress 100% @HLA-DRB1*15:03:01:01:1, elapsed 1.6s, est remaining 0.0s, peak mem 813MB, user 5.8s, sys 307.2s, output queue size 6320
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.002 user 0.000 sys 0.010 real
"predict_filter": 136 calls 0.019 user 0.026 sys 0.096 real
advance: 3219322 calls 0.380 user 118.809 sys 115.993 real
done: 1 calls 0.002 user 0.000 sys 0.002 real
execute: 1 calls 0.006 user 0.005 sys 1.802 real
fetch_ref: 384 calls 0.001 user 0.088 sys 0.055 real
idle: 20633 calls 0.653 user 0.230 sys 737.508 real
init: 1 calls 0.433 user 0.093 sys 0.716 real
overall: 852639744 mem 7.941 user 313.414 sys 3.762 real