File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/ee983d89b915920183c28a16f1cde4/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXETu22q/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXETu22q/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXETu22q/chr4_22420786-22421189.bed.gz.tbi
[2026-06-08T22:19:22.188798Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:22.190328Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:22.190353Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:22.190358Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:22.190365Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXETu22q'
[2026-06-08T22:19:22.190369Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:22.190374Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:22.190378Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:22.190382Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:22.190385Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:22.190390Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:22.190393Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:22.190398Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:22.190401Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:22.191292Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:22.191497Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:22.198263Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:22.199320Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:22.199635Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:22.200084Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:22.200461Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.201196Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.201428Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.201630Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.202059Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.202331Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.202629Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.202861Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.203158Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.203532Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.205519Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.206429Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:22.206738Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.206934Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.207234Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.207306Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.207531Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.207601Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.207722Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.207793Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.208051Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.208126Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.208259Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.208393Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.209047Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.209190Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.209389Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.209481Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.209605Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.209678Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.210502Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.210626Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.210778Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.210845Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.212138Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.212349Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.212846Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.212921Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.213063Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.213143Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.213435Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.213557Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.213677Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.213739Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.214568Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.214727Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.214917Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.215085Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.215219Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.215295Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.215411Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.215479Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.215882Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216220Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216336Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216400Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216520Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216588Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216697Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216765Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216876Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.216938Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.217110Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.217179Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.217387Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218097Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218293Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218372Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218494Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218568Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218687Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218762Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218878Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.218945Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.220838Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.221386Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.221667Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222221Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222339Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222417Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222532Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222596Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222711Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222772Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222885Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.222953Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.223073Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.223147Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.223391Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.223614Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.224408Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.224519Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.224664Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.224731Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.224957Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.225057Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.244868Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.245257Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.245457Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.245639Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.246534Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.246637Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.247086Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.247334Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.247703Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.248042Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.248623Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.249105Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.249578Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.250930Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.251200Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.251637Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:22.252467Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:22.252897Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.254175Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.259175Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:19:22.265769Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:19:22.266721Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:19:22.267193Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:22.272067Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:19:22.274313Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:19:22.276144Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:19:22.278161Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:19:23.193085Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.194702Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.198074Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:23.359409Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.360890Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.364685Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:19:23.426026Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.427032Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.431678Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:19:23.743854Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.745280Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.749303Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:19:23.750020Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.751442Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.755004Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:19:23.866676Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.868148Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.872330Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:23.876822Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.877896Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.881342Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:23.992847Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.994378Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.998116Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:24.210108Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.211996Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.215845Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:19:24.277066Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.278289Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.281624Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:19:24.344233Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.345736Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.349500Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:19:24.411027Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.411114Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.412128Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.412586Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.417143Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:24.418399Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:19:24.479596Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.479707Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.480899Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.481378Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.485868Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:19:24.487433Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:19:24.647742Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.648882Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.653481Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:19:25.165874Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.167129Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.170365Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:19:25.199554Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.200609Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.204469Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:19:25.217114Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.218404Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.221762Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:25.250696Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.251897Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.255982Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:25.284953Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.286179Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.289797Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:25.351325Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.352576Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.356395Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:19:25.467897Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.469070Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.472854Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:19:25.684199Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.685437Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.689457Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:25.694117Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.695081Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.699032Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:19:26.011335Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.012535Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.016131Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:19:26.178145Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.179348Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.183302Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:26.244360Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.245422Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.249728Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:19:26.310701Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.311867Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.315621Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:19:26.376663Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.377893Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.381650Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:26.442773Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.444187Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.460871Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:19:26.522233Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.523388Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.526979Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:19:26.588311Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.589337Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.593062Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:19:26.605659Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.606734Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.609902Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:19:26.640491Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.640630Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.641619Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.642110Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.642735Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.646205Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:19:26.648428Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.648807Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:26.652100Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:26.681547Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.682577Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.686736Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:19:26.687414Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.688245Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.692428Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:19:26.753424Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.754346Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.767732Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:26.828912Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.829017Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.829963Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.830404Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.835932Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:19:26.870407Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:19:26.896144Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.896246Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.897127Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.898077Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.902245Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:26.903746Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:19:26.965114Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.966212Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.969729Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:27.030962Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.031891Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.035645Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:27.197489Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.198469Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.202423Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:19:27.263637Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.264659Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.268463Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:19:27.380015Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.381270Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.385247Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:27.546644Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.547976Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.551679Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:19:27.612738Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.613865Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.617917Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:19:27.729356Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.730779Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.734692Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:19:27.763628Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.764865Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.769222Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:19:27.781428Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.782439Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.786445Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:19:27.815313Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.816587Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.820328Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:28.182570Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.183575Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.187519Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:28.248499Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.249485Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.253152Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:28.314574Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.315529Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.319013Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:28.580835Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.581990Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.586001Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:28.646998Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.648366Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.651701Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:19:28.713051Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.714604Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.718447Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:19:28.930053Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.931378Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.936001Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:19:29.047270Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.048444Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.052347Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:19:29.414077Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.415059Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.418804Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:19:29.630346Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.631535Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.635326Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:19:29.696325Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.696451Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.697446Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.698038Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.702024Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:29.702996Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:19:29.762623Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.762738Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.762790Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.763871Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.764517Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.764956Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.770817Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:29.771181Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:29.771710Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:19:29.782773Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.783618Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.786922Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:19:29.847930Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.848038Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.848083Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.849000Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.849606Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.850322Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.853958Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:29.858097Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:19:29.859388Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:29.916338Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.917252Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.920772Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:29.981956Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.982946Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.986781Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:19:30.047682Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.048710Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.052110Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:30.113195Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.114213Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.118776Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:19:30.229174Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.230174Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.234347Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:19:30.295216Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.295947Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.299698Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:19:30.329042Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.329761Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.333609Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:30.338058Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.370369Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.484979Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.485699Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.489654Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:19:30.550821Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.067005Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.067650Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.071452Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:19:31.132528Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.132640Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.133429Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.137462Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:31.198688Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.965020Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.965844Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.969039Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:19:32.030482Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.095022Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.095821Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.099301Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:19:32.112448Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.113171Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.116830Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:19:32.145706Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.153899Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.154252Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.154495Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.154947Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.155513Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.159601Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:32.162726Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:32.164294Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:32.221686Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.221798Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.221828Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.222203Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.222709Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.226967Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:32.228420Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:32.287777Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.287893Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.288263Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.291520Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:32.352845Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.818666Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:41.079467Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:41.079467Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] 
[2026-06-08T22:19:41.079467Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:41.079571Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] 
[2026-06-08T22:19:41.079583Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:41.079592Z] [nf-61ee983d89b915920183c28a16f1cde4-ae05d-wp7l7] [606_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec