Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/7519d9ada873f1b7fd56104cdf1f9b/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/7519d9ada873f1b7fd56104cdf1f9b/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:23.094441Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:23.095229Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:23.095245Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:23.095249Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:23.095254Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXylGSqh'
[2026-06-08T22:19:23.095258Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:23.095264Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:23.095268Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:23.095272Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:19:23.095276Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:23.095280Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:23.095283Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:23.095287Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:23.095291Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:23.095963Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:23.096121Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:23.102285Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:23.103125Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:23.103362Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:23.103620Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:23.103886Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.105484Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.105756Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.105886Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.105959Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.106116Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.106767Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.107253Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.109087Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.109526Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:23.109967Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.110236Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.110536Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.110609Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.110729Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.110794Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.110912Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.110976Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.111093Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.111161Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.111342Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.111409Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.111747Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.111974Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112094Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112178Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112320Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112386Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112496Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112562Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112670Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112748Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112862Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.112925Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.113232Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.113557Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.113712Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.113790Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.113900Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.113962Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.114080Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.114142Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.114255Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.114323Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.114430Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.114549Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.114916Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.115370Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.115493Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.115561Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.115672Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.115739Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.115849Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.115911Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.116024Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.116088Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130132Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130251Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130322Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130487Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130564Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130646Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130720Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130831Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130902Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.130956Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:23.148442Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.149100Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.149538Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150027Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.150860Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.151532Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.152843Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.156624Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.157819Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.161211Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T22:19:23.169890Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T22:19:23.174009Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:23.174920Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T22:19:23.175298Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T22:19:23.181982Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T22:19:23.182423Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:19:23.183330Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T22:19:23.277328Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.278124Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.284587Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T22:19:23.295381Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.296081Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.302712Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T22:19:24.213944Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.214715Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.218559Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T22:19:24.247470Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.248328Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.251791Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:19:24.313232Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.314051Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.317614Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:19:24.379111Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.379925Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.384184Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T22:19:24.495380Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.496202Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.500122Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T22:19:25.012895Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.013003Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.013872Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.014333Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.019146Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T22:19:25.020691Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T22:19:25.080589Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.081385Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.084987Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:25.447260Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.448071Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.451352Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T22:19:25.512596Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.513379Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.517402Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:25.628365Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.629055Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.639850Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T22:19:25.700609Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.701397Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.704992Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T22:19:25.966639Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.967327Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.970925Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T22:19:26.032178Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.032992Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.036451Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:26.097765Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.097871Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.098699Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.099196Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.103171Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:26.104034Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T22:19:26.164045Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.164165Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.164203Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.164851Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.165355Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.166007Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.171595Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T22:19:26.173448Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T22:19:26.174775Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T22:19:26.230816Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.231576Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.235173Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T22:19:26.239954Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.240544Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.244078Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T22:19:26.305254Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.305377Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.306230Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.306990Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.310987Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T22:19:26.312597Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T22:19:26.373904Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.374008Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.374592Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.375138Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.379253Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T22:19:26.380427Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:26.440253Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.440972Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.444721Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T22:19:26.606086Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.606788Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.610456Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T22:19:26.639655Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.640289Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.643419Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T22:19:26.704627Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.705237Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.708509Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:26.769560Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.770262Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.773748Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T22:19:26.935187Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.935877Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.939803Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:27.000690Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.001370Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.005116Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T22:19:27.066461Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.067080Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.070470Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T22:19:27.131979Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.132698Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.136194Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T22:19:27.247850Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.248530Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.252051Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T22:19:27.313325Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.314077Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.318465Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T22:19:27.881014Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.881709Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.885401Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T22:19:27.946465Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.947093Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.950628Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:28.011814Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.326760Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.327335Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.330865Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T22:19:28.391999Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.424525Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.425099Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.428889Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T22:19:28.489963Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.804863Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.805511Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.808806Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T22:19:28.870028Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.877945Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.878422Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.881673Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T22:19:28.943262Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.258271Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.258795Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.262530Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T22:19:29.323419Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.591304Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.591755Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.595113Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T22:19:30.656412Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.871252Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.871955Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.875068Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:30.936652Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.937060Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.937335Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.937757Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.938597Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.942809Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:30.944296Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:30.945248Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:30.972617Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.972720Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.973086Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.973944Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.974509Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.978710Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:30.979456Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:31.039672Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.039779Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.040086Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.043166Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:31.104709Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.675235Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:41.984034Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:41.984034Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] 
[2026-06-08T22:19:41.984034Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:41.984173Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] 
[2026-06-08T22:19:41.984187Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:41.984197Z] [nf-067519d9ada873f1b7fd56104cdf1f9b-3fada-cxwtj] [603_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec