File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/4d5fa890a536365a4dd8added98120/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-08T22:19:25.538439Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:25.539751Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:25.539776Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:25.539782Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:25.539787Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXCSA2Fb'
[2026-06-08T22:19:25.539792Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:25.539798Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:25.539802Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:25.539806Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] memMb: 773429
[2026-06-08T22:19:25.539810Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:25.539814Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:25.539818Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:25.539822Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:25.539826Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:25.540724Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:25.540783Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:25.547872Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:25.548684Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:25.548824Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:25.549135Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:25.549334Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.549821Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.550793Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.552537Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.552649Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:25.552798Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.553017Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.553182Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.553328Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.553501Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.553631Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.553701Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.553948Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.554149Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.554469Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.554552Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.554687Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.554767Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.554900Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.554973Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.555174Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.555251Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.555384Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.555474Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.555929Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556010Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556150Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556223Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556354Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556441Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556594Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556681Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556847Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.556933Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.557503Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.557617Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.557752Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.557843Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.557974Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.558049Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.558183Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.558256Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.558389Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.558469Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.558612Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.558759Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.559363Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.559439Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.559636Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.559712Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.559839Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.559913Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.560037Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.560104Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.560224Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.560298Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.560586Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561107Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561235Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561304Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561429Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561497Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561622Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561691Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561810Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.561885Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.562007Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.562073Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.562218Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.562822Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.562944Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.563014Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.563134Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.563203Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.583346Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.583858Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.583979Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.584153Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.584534Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.585361Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.585440Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.585617Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.585910Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.586021Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.586360Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.586919Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.587049Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.587602Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.587854Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588139Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588403Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:25.589637Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.590311Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.594551Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:19:25.597171Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:19:25.600477Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:19:25.600977Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:25.603672Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T22:19:25.607375Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T22:19:25.608897Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:19:25.610014Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:25.718432Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.718516Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.718549Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.719514Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.720137Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.720704Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.724413Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:19:25.726195Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:25.727615Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:26.848828Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.849772Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.853408Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T22:19:27.114768Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.117038Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.119843Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:19:27.181283Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.182931Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.186096Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:19:27.247188Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.248498Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.252562Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:27.563686Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.565093Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.572907Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T22:19:27.779759Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.781072Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.784940Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:19:27.896509Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.897886Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.900640Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T22:19:27.905842Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.907219Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.909967Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:27.939043Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.940677Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.941137Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.942568Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.945833Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T22:19:27.946742Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.947066Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:19:27.947742Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.949860Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T22:19:27.979920Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.979991Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.980729Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.981125Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.984010Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:19:27.985126Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:19:28.045168Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.046051Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.048617Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:28.049685Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.050452Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.053127Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:28.082678Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.083502Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.086291Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T22:19:28.197706Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.198963Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.201837Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T22:19:28.230947Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.232026Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.234439Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:19:28.696958Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.697871Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.700822Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:19:29.063151Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.064097Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.067124Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T22:19:29.096207Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.097364Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.097667Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.100211Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.102063Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:19:29.103128Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:19:29.116753Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.117528Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.120019Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:19:29.133356Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.133421Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.134125Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.134430Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.137096Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:19:29.138253Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:29.151621Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.152602Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.155377Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T22:19:29.168977Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.169046Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.169651Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.170143Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.173207Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:19:29.174401Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:19:29.202247Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.202962Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.205881Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:29.267215Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.267926Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.270683Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T22:19:29.884126Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.884915Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.887750Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T22:19:29.949116Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.949983Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.952788Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T22:19:30.214738Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.215545Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.218510Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T22:19:30.219525Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.220159Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.222500Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:19:30.252511Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.253257Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.256055Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:30.720147Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.720846Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.723606Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:30.785296Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.785977Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.789101Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T22:19:30.802311Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.802912Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.805549Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:30.867294Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.867964Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.870422Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:30.932115Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.932816Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.935865Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:30.997218Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.998157Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.000826Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:19:31.062305Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.063014Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.066507Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:31.095393Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.096167Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.099024Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T22:19:31.099911Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.100456Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.102841Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T22:19:31.132615Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.132724Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.133582Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.134060Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.137163Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:31.138333Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:19:31.198186Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.198857Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.201500Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:31.232304Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.232833Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.235444Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:31.297223Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.298143Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.300948Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:31.362372Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.363020Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.365886Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:31.427521Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.428126Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.431203Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T22:19:31.460326Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.460951Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.462985Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.463575Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.463772Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:19:31.466429Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T22:19:31.495968Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.496716Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.499171Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:31.560951Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.561515Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.564147Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:31.577870Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.578689Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.581245Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:31.610618Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.610685Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.774889Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.775341Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.777898Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T22:19:31.808581Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.922854Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.923393Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.926420Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:19:31.988355Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.020633Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.021087Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.023508Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T22:19:32.054100Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.569174Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.569647Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.572321Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:32.601794Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.116914Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.117313Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.119859Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T22:19:33.149074Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.714655Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.715111Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.717564Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T22:19:33.747498Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.747808Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.747952Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.748178Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.748358Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.751190Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:33.752900Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:33.753612Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:33.780944Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.781008Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.781029Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.781235Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.781690Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.784038Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:33.785043Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:33.814702Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.814763Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.814972Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.817321Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:33.846910Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.166288Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:44.428353Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:44.428353Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] 
[2026-06-08T22:19:44.428353Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:44.428414Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] 
[2026-06-08T22:19:44.428425Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:44.428431Z] [nf-744d5fa890a536365a4dd8added98120-6b480-5k894] [612_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec