File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/3d6e52da3f36054d0db8129b16e355/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-kvv427t0 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:52,387 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:53,167 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:53,335 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:54,355 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:54,423 - cnv_pipe.batch.run_model - INFO - Processing cluster 1296 with 196 probes
2026-06-08 22:24:54,791 - cnv_pipe.batch.run_model.cluster1296 - INFO - Child process started for cluster 1296 with 196 probes
2026-06-08 22:25:50,889 - cnv_pipe.batch.run_model.cluster1296 - INFO - Child process finished cluster 1296. Wrote cluster_1296_samples.csv and cluster_1296_params.csv
2026-06-08 22:25:50,890 - cnv_pipe.batch.run_model - INFO - Cluster 1296 finished in 56.47 seconds. Status: SUCCESS