cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:195000001, elapsed 0.0s, est remaining 0.6s, peak mem 221MB, user 0.1s, sys 1.0s, output queue size 134
progress 10% @chr2:95000001, elapsed 0.1s, est remaining 0.5s, peak mem 221MB, user 0.2s, sys 2.3s, output queue size 295
progress 15% @chr3:6000001, elapsed 0.1s, est remaining 0.4s, peak mem 221MB, user 0.3s, sys 3.8s, output queue size 457
progress 20% @chr3:180000001, elapsed 0.1s, est remaining 0.4s, peak mem 221MB, user 0.4s, sys 5.5s, output queue size 278
progress 25% @chr4:132000001, elapsed 0.1s, est remaining 0.4s, peak mem 221MB, user 0.5s, sys 7.1s, output queue size 438
progress 30% @chr5:92000001, elapsed 0.1s, est remaining 0.3s, peak mem 221MB, user 0.6s, sys 8.8s, output queue size 600
progress 35% @chr6:85000001, elapsed 0.2s, est remaining 0.3s, peak mem 221MB, user 0.7s, sys 10.4s, output queue size 761
progress 40% @chr6:106000001, elapsed 0.2s, est remaining 0.3s, peak mem 221MB, user 0.8s, sys 11.9s, output queue size 922
progress 45% @chr8:70000001, elapsed 0.2s, est remaining 0.3s, peak mem 221MB, user 1.0s, sys 13.4s, output queue size 1084
progress 50% @chr9:100000001, elapsed 0.2s, est remaining 0.2s, peak mem 221MB, user 1.2s, sys 14.8s, output queue size 1246
progress 55% @chr10:116000001, elapsed 0.3s, est remaining 0.2s, peak mem 221MB, user 1.2s, sys 16.1s, output queue size 1407
progress 60% @chr12:13000001, elapsed 0.3s, est remaining 0.2s, peak mem 221MB, user 1.4s, sys 17.4s, output queue size 1569
progress 65% @chr13:44000001, elapsed 0.3s, est remaining 0.2s, peak mem 221MB, user 1.5s, sys 18.6s, output queue size 1731
progress 70% @chr15:14000001, elapsed 0.3s, est remaining 0.1s, peak mem 221MB, user 1.6s, sys 19.9s, output queue size 1893
progress 75% @chr16:31000001, elapsed 0.4s, est remaining 0.1s, peak mem 221MB, user 1.7s, sys 21.2s, output queue size 2054
progress 80% @chr18:23000001, elapsed 0.4s, est remaining 0.1s, peak mem 221MB, user 1.8s, sys 22.8s, output queue size 2216
progress 85% @chr20:63000001, elapsed 0.4s, est remaining 0.1s, peak mem 222MB, user 1.8s, sys 23.8s, output queue size 2379
progress 90% @chr22:23000001, elapsed 0.4s, est remaining 0.0s, peak mem 222MB, user 2.0s, sys 25.1s, output queue size 2540
progress 95% @chrY:49000001, elapsed 0.5s, est remaining 0.0s, peak mem 222MB, user 2.1s, sys 26.5s, output queue size 2799
progress 100% @HLA-DQB1*03:03:02:03:1, elapsed 0.5s, est remaining 0.0s, peak mem 223MB, user 2.3s, sys 30.2s, output queue size 6126
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000c06f2
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 96 max 96
algo: TNfilter
license: sentieon:TNhaplotyper=96
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.002 user 0.000 sys 0.013 real
"predict_filter": 171 calls 0.005 user 0.002 sys 0.012 real
advance: 3219322 calls 0.356 user 10.839 sys 13.325 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.000 sys 0.589 real
fetch_ref: 448 calls 0.003 user 0.035 sys 0.436 real
idle: 19769 calls 0.352 user 0.279 sys 130.803 real
init: 1 calls 0.187 user 0.050 sys 0.350 real
overall: 234754048 mem 3.432 user 33.456 sys 1.971 real