[2026-06-08T22:19:23.994623Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:23.995212Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:23.995230Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:23.995236Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:23.995243Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXy3UY2s'
[2026-06-08T22:19:23.995248Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:23.995256Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:23.995261Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:23.995266Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T22:19:23.995271Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:23.995277Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:23.995281Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:23.995287Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:23.995292Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:23.995701Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:23.995831Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:24.002987Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:24.003655Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:24.003792Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:24.003983Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:24.004190Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.004662Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.004773Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.004862Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.005014Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.005183Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.005585Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.005726Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.006044Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.006545Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.006893Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.007133Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.008807Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.009419Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:24.009552Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.009643Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.009782Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.009883Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.010025Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.010105Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.010444Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.010773Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.010918Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.011005Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.011144Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.011221Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.011366Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.011449Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.011632Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.011720Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.012054Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.012412Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.012549Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.012625Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.012761Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.012844Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.012985Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.013061Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.013196Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.013277Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.013446Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.013700Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014173Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014255Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014391Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014472Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014624Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014769Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014911Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.014996Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.015138Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.015273Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.016018Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.016142Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.016301Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.016385Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.016531Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.016871Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.017258Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.017743Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.017910Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.017991Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.018137Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.018218Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.018355Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.018442Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.018605Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.018680Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.019697Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.020293Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.020441Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.020525Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.020666Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.020744Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.022506Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023163Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023330Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023420Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023566Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023648Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023819Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023908Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.024054Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.024141Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.024751Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.025443Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.025603Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.025727Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.025899Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.025987Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.026134Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.026217Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.026355Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.026444Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.027416Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.027961Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.028903Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.028986Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.047401Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.047756Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.048037Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.048269Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.049241Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.049369Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.049627Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.050001Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.050348Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.050542Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.050930Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.051351Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.051993Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.052188Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.052875Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.053020Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.053423Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:24.053905Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.054649Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.059582Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:19:24.062490Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:24.065877Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:24.071864Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:24.072676Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:19:24.076373Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:24.160183Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:19:24.189043Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.189109Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.190210Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.190430Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.194476Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:19:24.195744Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:25.138311Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:25.157830Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.157923Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.159004Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.159392Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.163719Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:25.164728Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:19:25.273955Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.275148Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.278626Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:25.590245Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.592026Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595032Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:19:25.624186Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.625929Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.629412Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:19:25.990965Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.992200Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.995824Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:26.056640Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.058012Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061555Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:26.172627Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.174297Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.177775Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:26.238760Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.240580Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.244153Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:26.505597Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.507484Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.511613Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:19:26.923109Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.924248Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.927579Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:26.988797Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.990027Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.993317Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:19:27.204895Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.206625Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.210434Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:19:28.273241Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.275371Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.279447Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:19:28.340205Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.341887Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.345327Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:19:28.506834Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.508501Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.511960Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:19:28.572912Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.574550Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.578411Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:28.639352Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.640938Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.644492Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:19:28.705455Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.707085Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.710028Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:19:28.821546Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.821643Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.823212Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.823685Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.835568Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:28.836784Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:19:28.847602Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.849073Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.851847Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:28.856978Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.858349Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.860846Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.861930Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:19:28.863092Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.865938Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:19:28.871026Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.872431Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.875107Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:19:28.888387Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.889831Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.892864Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:19:28.897897Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.899400Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.902409Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:28.907451Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.908689Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.911280Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:19:28.972686Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.972791Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.974160Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.974611Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.979309Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:29.045362Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:29.089089Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.089188Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.090122Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.090392Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.093424Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:29.094793Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:29.154631Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.155977Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.159936Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:29.270897Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.271914Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.275530Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:29.336564Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.338112Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.341553Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:29.452462Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.453464Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.457711Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:29.769043Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.770490Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.773741Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:29.834957Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.836497Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.840151Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:19:30.051526Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.052534Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.055891Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:19:30.116621Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.117556Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.121250Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:30.133913Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.134848Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.137585Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:19:30.199109Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.199286Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.200596Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.201148Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.204778Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:30.206247Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:30.265841Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.265988Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.267370Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.267861Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.271788Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:19:30.301822Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:19:30.333468Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.333577Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.334882Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.335349Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.339227Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:30.340459Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:30.400245Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.401649Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.405160Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:19:30.433934Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.435270Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.438041Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:30.499580Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.500940Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.504713Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:19:30.615907Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.616835Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.620063Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:19:30.681448Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.681547Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.682447Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.682835Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.686488Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:30.687568Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:19:30.747417Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.748372Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.752209Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:30.863087Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.864378Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.867677Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:30.928875Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.929795Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.933176Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:19:31.244990Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.246373Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.249477Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:19:31.310781Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.312425Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.312885Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.314716Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.317909Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:31.319473Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:31.380723Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.380815Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.380859Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.381641Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.381887Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.382332Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.385856Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:19:31.387470Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:19:31.388955Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:31.448831Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.450029Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.453765Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:19:32.216071Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.216871Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.220377Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:19:32.281287Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.282523Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.286010Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:32.347165Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.348377Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.352224Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:32.356635Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.357767Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.360880Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:32.422171Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.422288Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.423399Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.423879Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.428413Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:32.428968Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:19:32.538365Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.539459Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.543130Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:32.603981Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.605149Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.608758Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:19:32.669839Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.670937Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.673942Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:19:32.785274Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.786058Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.789461Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:19:32.850518Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.851261Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.854162Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:32.915419Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.916505Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.919112Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:19:32.980524Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.981206Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.983878Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:19:33.045258Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.046406Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.049554Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:33.110762Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.111503Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.114862Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:19:33.326251Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.326338Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.326998Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.327335Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.327810Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.330473Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:33.330630Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.333184Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:19:33.334153Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:19:33.394818Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.394930Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.394981Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.395913Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.399298Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:19:33.460312Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.725230Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.725900Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.729221Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:19:33.790310Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.357353Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.358301Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.361342Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:19:35.422520Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.837185Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.837838Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.840967Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:19:35.902217Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.667494Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.668063Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.671074Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:19:36.732028Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.549234Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.549810Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.552779Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:19:43.614083Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.614436Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.614601Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.614822Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.615109Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.619301Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:43.620561Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:43.621547Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:43.647517Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.647560Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.647584Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.647770Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.648057Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.651503Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:43.678134Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:43.680119Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.680185Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.680410Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:43.682610Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:43.712043Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:57.182235Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:20:12.114304Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:20:12.114304Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] 
[2026-06-08T22:20:12.114304Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:20:12.114388Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] 
[2026-06-08T22:20:12.114397Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:20:12.114405Z] [nf-d4fe206bee3c9c6c00809b0dec922872-8339c-mz2bq] [742_1] [WorkflowRunner] Elapsed time for full workflow: 48 sec