File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/66f407cffc414457562ef28cfccc1f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-4khgcpor because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:46,273 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:47,076 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:47,242 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:48,152 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:48,311 - cnv_pipe.batch.run_model - INFO - Processing cluster 1263 with 99 probes
2026-06-08 22:24:48,680 - cnv_pipe.batch.run_model.cluster1263 - INFO - Child process started for cluster 1263 with 99 probes
2026-06-08 22:25:20,433 - cnv_pipe.batch.run_model.cluster1263 - INFO - Child process finished cluster 1263. Wrote cluster_1263_samples.csv and cluster_1263_params.csv
2026-06-08 22:25:20,434 - cnv_pipe.batch.run_model - INFO - Cluster 1263 finished in 32.12 seconds. Status: SUCCESS