Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/65259f8b655b5c979ee71590bd5423/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/FINAL_hotspot_list_07302025_hg38_sorted.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/65259f8b655b5c979ee71590bd5423/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/affe90ad272751a557cfb55ea8a87a/HCC1395_tumor.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/affe90ad272751a557cfb55ea8a87a/HCC1395_tumor.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:168000001, elapsed 0.0s, est remaining 0.9s, peak mem 99MB, user 0.1s, sys 1.0s, output queue size 13
progress 10% @chr2:79000001, elapsed 0.1s, est remaining 0.8s, peak mem 99MB, user 0.3s, sys 2.2s, output queue size 21
progress 15% @chr2:226000001, elapsed 0.2s, est remaining 0.9s, peak mem 99MB, user 0.4s, sys 3.8s, output queue size 35
progress 20% @chr3:143000001, elapsed 0.2s, est remaining 0.9s, peak mem 99MB, user 0.5s, sys 5.9s, output queue size 29
progress 25% @chr4:105000001, elapsed 0.3s, est remaining 0.9s, peak mem 99MB, user 0.7s, sys 7.8s, output queue size 29
progress 30% @chr5:111000001, elapsed 0.4s, est remaining 0.8s, peak mem 99MB, user 0.8s, sys 9.7s, output queue size 31
progress 35% @chr6:34000001, elapsed 0.4s, est remaining 0.8s, peak mem 99MB, user 0.9s, sys 11.8s, output queue size 31
progress 40% @chr7:53000001, elapsed 0.5s, est remaining 0.7s, peak mem 99MB, user 1.0s, sys 13.7s, output queue size 63
progress 45% @chr8:82000001, elapsed 0.6s, est remaining 0.7s, peak mem 99MB, user 1.1s, sys 15.9s, output queue size 36
progress 50% @chr9:72000001, elapsed 0.6s, est remaining 0.6s, peak mem 99MB, user 1.3s, sys 17.8s, output queue size 33
progress 55% @chr10:122000001, elapsed 0.7s, est remaining 0.6s, peak mem 99MB, user 1.4s, sys 19.9s, output queue size 32
progress 60% @chr12:7000001, elapsed 0.8s, est remaining 0.5s, peak mem 99MB, user 1.5s, sys 21.8s, output queue size 21
progress 65% @chr13:14000001, elapsed 0.8s, est remaining 0.5s, peak mem 99MB, user 1.7s, sys 23.7s, output queue size 31
progress 70% @chr14:89000001, elapsed 0.9s, est remaining 0.4s, peak mem 99MB, user 1.8s, sys 25.7s, output queue size 21
progress 75% @chr16:35000001, elapsed 1.0s, est remaining 0.3s, peak mem 99MB, user 2.0s, sys 27.6s, output queue size 32
progress 80% @chr18:4000001, elapsed 1.0s, est remaining 0.3s, peak mem 99MB, user 2.2s, sys 29.4s, output queue size 18
progress 85% @chr20:22000001, elapsed 1.1s, est remaining 0.2s, peak mem 99MB, user 2.4s, sys 30.4s, output queue size 15
progress 90% @chrX:40000001, elapsed 1.1s, est remaining 0.1s, peak mem 108MB, user 2.8s, sys 31.2s, output queue size 114
progress 95% @chrY:32000001, elapsed 1.2s, est remaining 0.1s, peak mem 117MB, user 3.3s, sys 32.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.5s, est remaining 0.0s, peak mem 147MB, user 4.4s, sys 34.1s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50813903
reads: 1001320
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.338 user 17.674 sys 18.993 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.002 sys 1.507 real
idle: 80 calls 0.005 user 0.027 sys 38.159 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 154296320 mem 4.549 user 34.893 sys 2.643 real