cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:164000001, elapsed 0.0s, est remaining 0.6s, peak mem 220MB, user 0.1s, sys 0.6s, output queue size 104
progress 10% @chr2:90000001, elapsed 0.1s, est remaining 0.5s, peak mem 220MB, user 0.2s, sys 2.3s, output queue size 265
progress 15% @chr3:10000001, elapsed 0.1s, est remaining 0.4s, peak mem 220MB, user 0.3s, sys 3.9s, output queue size 210
progress 20% @chr3:174000001, elapsed 0.1s, est remaining 0.4s, peak mem 220MB, user 0.4s, sys 5.5s, output queue size 372
progress 25% @chr4:127000001, elapsed 0.1s, est remaining 0.4s, peak mem 220MB, user 0.6s, sys 7.1s, output queue size 532
progress 30% @chr5:113000001, elapsed 0.1s, est remaining 0.3s, peak mem 220MB, user 0.8s, sys 8.6s, output queue size 694
progress 35% @chr6:78000001, elapsed 0.2s, est remaining 0.3s, peak mem 220MB, user 0.9s, sys 10.1s, output queue size 855
progress 40% @chr7:112000001, elapsed 0.2s, est remaining 0.3s, peak mem 220MB, user 1.0s, sys 11.3s, output queue size 1016
progress 45% @chr8:92000001, elapsed 0.2s, est remaining 0.3s, peak mem 220MB, user 1.1s, sys 12.5s, output queue size 1178
progress 50% @chr9:100000001, elapsed 0.2s, est remaining 0.2s, peak mem 220MB, user 1.3s, sys 13.8s, output queue size 1340
progress 55% @chr10:118000001, elapsed 0.3s, est remaining 0.2s, peak mem 220MB, user 1.4s, sys 15.1s, output queue size 1501
progress 60% @chr12:13000001, elapsed 0.3s, est remaining 0.2s, peak mem 220MB, user 1.5s, sys 16.4s, output queue size 1663
progress 65% @chr13:44000001, elapsed 0.3s, est remaining 0.2s, peak mem 220MB, user 1.7s, sys 17.6s, output queue size 1825
progress 70% @chr14:75000001, elapsed 0.3s, est remaining 0.1s, peak mem 220MB, user 1.9s, sys 19.1s, output queue size 1987
progress 75% @chr16:38000001, elapsed 0.4s, est remaining 0.1s, peak mem 220MB, user 1.9s, sys 20.5s, output queue size 2148
progress 80% @chr17:66000001, elapsed 0.4s, est remaining 0.1s, peak mem 220MB, user 2.1s, sys 21.5s, output queue size 2310
progress 85% @chr20:45000001, elapsed 0.4s, est remaining 0.1s, peak mem 220MB, user 2.2s, sys 22.1s, output queue size 2473
progress 90% @chrX:62000001, elapsed 0.5s, est remaining 0.1s, peak mem 220MB, user 2.4s, sys 23.7s, output queue size 127
progress 95% @chrX:41000001, elapsed 0.5s, est remaining 0.0s, peak mem 220MB, user 2.5s, sys 25.0s, output queue size 343
progress 100% @HLA-A*29:02:01:01:1, elapsed 0.6s, est remaining 0.0s, peak mem 224MB, user 2.6s, sys 28.0s, output queue size 3713
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 96 max 96
algo: TNfilter
license: sentieon:TNhaplotyper=96
input file size: 51111
output file size: 43432
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.003 user 0.000 sys 0.014 real
"predict_filter": 171 calls 0.007 user 0.000 sys 0.017 real
advance: 3219322 calls 0.468 user 10.542 sys 12.936 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.001 sys 0.662 real
fetch_ref: 460 calls 0.001 user 0.043 sys 0.014 real
idle: 19769 calls 0.332 user 0.078 sys 131.948 real
init: 1 calls 0.159 user 0.072 sys 0.356 real
overall: 235540480 mem 3.855 user 30.781 sys 2.001 real