[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXqPWUcK/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXqPWUcK/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXqPWUcK/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T22:19:25.569265Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:25.571326Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:25.571360Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:25.571366Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:25.571372Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqPWUcK'
[2026-06-08T22:19:25.571376Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:25.571381Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:25.571386Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:25.571413Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:25.571417Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:25.571421Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:25.571431Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:25.571437Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:25.571441Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:25.572617Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:25.572699Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:25.579157Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:25.580025Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:25.580645Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:25.581045Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:25.581276Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.581668Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.581771Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.581842Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.582290Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.582423Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.583165Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.583974Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.586615Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.586965Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.587185Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.587379Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:25.587908Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588336Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588483Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588549Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588656Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588721Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588831Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.588892Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.589079Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.589146Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.589254Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.589318Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.589555Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.590201Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.590481Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.590568Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.590703Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.590821Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.591356Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.591581Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.592080Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.592291Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.592551Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.592952Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593303Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593372Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593489Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593558Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593670Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593732Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593843Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.593906Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.594831Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595226Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595350Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595482Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595606Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595673Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595787Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595851Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595962Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.596024Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.596141Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.596206Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.596473Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.596898Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597013Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597077Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597187Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597250Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597364Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597431Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597536Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.597687Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.609722Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.609871Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.609951Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.610135Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.610209Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.610298Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.610364Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.610477Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.610551Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:25.612380Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:25.622444Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.623163Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.625390Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.626165Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:25.626369Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.627024Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.629152Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.629560Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:25.630042Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.632482Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:25.633357Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.634106Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.642744Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:25.643678Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:25.646533Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:25.646998Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:25.650523Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:25.753213Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.754098Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.758740Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:26.170829Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.171698Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.175593Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:26.236540Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.237368Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.240828Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:26.602536Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.603642Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.607021Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:27.219286Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.221015Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.221561Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.222453Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.225661Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:19:27.226616Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:27.286544Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.287525Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.291008Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:27.402162Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.403497Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.408176Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:27.669256Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.670100Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.673659Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:19:27.735114Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.735995Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.739583Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:27.850920Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.851811Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.855136Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:28.016988Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.017870Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.021061Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:19:28.082437Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.083250Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.086843Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:19:28.147790Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.148746Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.152356Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:28.865623Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.866430Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.869552Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:19:28.874579Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.875304Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.878851Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:19:28.908454Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.909239Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.924761Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.925282Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:19:28.926009Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.929591Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:28.990708Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.991557Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.994822Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:28.997163Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.997778Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.001445Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:29.062606Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.063322Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.066483Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:29.128104Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.128214Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.128905Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.129241Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.132557Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:19:29.133607Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:19:29.193539Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.193637Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.194524Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.194957Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.199070Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:19:29.199674Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:19:29.259470Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.259565Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.260263Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.260602Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.264509Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:29.266461Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:29.526017Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.526837Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.530605Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:19:29.591372Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.592258Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.596020Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:30.058668Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.059392Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.063102Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:30.174717Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.175466Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.179174Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:30.240525Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.241245Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.245581Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:30.306364Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.307102Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.310623Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:19:30.371969Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.372692Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.376718Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:30.437438Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.438496Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.442050Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:30.854314Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.854927Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.859374Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:19:30.920104Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.920800Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.923899Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:31.286590Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.286698Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.286751Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.287553Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.288299Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.288933Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.292894Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.293581Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:19:31.294550Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:19:31.295668Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.298211Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:31.299646Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:19:31.328766Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.329671Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.330351Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.330800Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.332691Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.334561Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.334897Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:31.335671Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:19:31.338385Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:31.399335Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.399448Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.399965Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.401164Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.404367Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:31.405579Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:19:31.468664Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.468772Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.469326Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.470016Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.473575Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:19:31.474785Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:19:31.502596Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.503173Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.506205Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:19:31.511183Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.511269Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.511859Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.512191Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.515408Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:31.516254Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:31.545693Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.561729Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.569556Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.570009Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.573112Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:19:31.634706Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.102931Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.103443Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.106713Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:33.119964Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.120422Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.123920Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:19:33.152746Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.160491Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.164044Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.164542Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.167611Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:19:33.228934Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.743966Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.744513Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.747915Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:19:33.809075Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.524408Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.524991Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.528663Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:19:34.589433Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.589726Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.589907Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.590219Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.590476Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.594306Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.595732Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:34.596626Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.624426Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.624720Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.627840Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.628597Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.628653Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.628840Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.632071Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.661246Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.664729Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.664969Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.667966Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:34.697301Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.164752Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:44.461232Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:44.461232Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] 
[2026-06-08T22:19:44.461232Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:44.461350Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] 
[2026-06-08T22:19:44.461357Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:44.461364Z] [nf-a9749ba2595648d78d6bfc7137df4158-a5ac2-7hmpx] [619_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec