File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/c12bb7f079215f87b9240f1e1d7079/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ybibcoj4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:52,464 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:53,363 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:53,542 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:54,588 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:54,765 - cnv_pipe.batch.run_model - INFO - Processing cluster 770 with 156 probes
2026-06-08 22:23:55,172 - cnv_pipe.batch.run_model.cluster770 - INFO - Child process started for cluster 770 with 156 probes
2026-06-08 22:24:44,109 - cnv_pipe.batch.run_model.cluster770 - INFO - Child process finished cluster 770. Wrote cluster_770_samples.csv and cluster_770_params.csv
2026-06-08 22:24:44,110 - cnv_pipe.batch.run_model - INFO - Cluster 770 finished in 49.34 seconds. Status: SUCCESS