Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/1f0365e92a8c9e1eb3987a173396f4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/1f0365e92a8c9e1eb3987a173396f4/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:19.731539Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:19.735378Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:19.735393Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:19.735398Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:19.735403Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXxJACde'
[2026-06-08T22:19:19.735409Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:19.735419Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:19.735424Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:19.735429Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T22:19:19.735435Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:19.735440Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:19.735445Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:19.735450Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:19.735457Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:19.735868Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:19.735964Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:19.742883Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:19.743448Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:19.743653Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:19.743941Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:19.744304Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.745480Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.745644Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.746403Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.746618Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.747184Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.747720Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.750737Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.751172Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:19.751286Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.751950Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.752266Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.752633Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.752764Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.753048Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.753228Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.754225Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.754438Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.754711Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.754884Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.755558Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.756132Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.756418Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.756554Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.756779Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.756897Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.757198Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.758403Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.758667Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.758995Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.759269Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.759419Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.759831Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.760586Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.760808Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.760927Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.761138Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.761327Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.761609Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.761845Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.763859Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.764487Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.764793Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.764932Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.765168Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.765389Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.766324Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.767186Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.767546Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.767869Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.768811Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.769602Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.769903Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.770042Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.770273Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.770395Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.796260Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.796461Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.796602Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.796964Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.798042Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.798397Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.798553Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.798736Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.798869Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.802112Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.802681Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.803330Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:19.804381Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T22:19:19.805627Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.806562Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:19.808152Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T22:19:19.809182Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.810443Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.812095Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.814172Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.822734Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T22:19:19.826956Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:19.828523Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T22:19:19.835186Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T22:19:19.836494Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T22:19:19.836975Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T22:19:19.839130Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T22:19:20.955205Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.956019Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:20.959590Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:21.321384Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.322411Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.325992Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T22:19:21.437073Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.437930Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.440536Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T22:19:21.551901Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.552700Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.556118Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:21.617070Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.617851Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:21.621309Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T22:19:22.133120Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.133961Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.137459Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T22:19:22.448818Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.449616Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.452390Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T22:19:22.513557Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.514792Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.518032Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T22:19:22.779388Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.780523Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.783121Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T22:19:22.844579Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.845757Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.848919Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T22:19:22.910232Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.911396Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.913767Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T22:19:22.943283Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.944398Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:22.946978Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T22:19:23.058574Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.059737Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.062323Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T22:19:23.091685Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.092780Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.095372Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:23.156880Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.157989Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.160570Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T22:19:23.272260Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.273422Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.276786Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T22:19:24.340110Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.340841Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.343698Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:19:24.344567Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.345121Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.348527Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T22:19:24.409300Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.409383Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.410090Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.410331Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.413639Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T22:19:24.447196Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:19:24.475239Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.475314Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.476118Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.476424Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.480124Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T22:19:24.481242Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T22:19:24.484584Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.485281Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.488116Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:19:24.517391Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.518101Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.521488Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T22:19:24.522062Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.522658Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.525516Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T22:19:24.554621Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.555285Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.558672Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T22:19:24.559105Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.559740Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.562985Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:24.623842Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.624571Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.627635Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T22:19:24.628352Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.628967Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.631887Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:19:24.692955Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.693047Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.693667Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.694028Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.697459Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T22:19:24.698435Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:24.758369Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.758961Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.761112Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.761845Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.762277Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T22:19:24.765018Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:19:24.777761Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.778281Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.781473Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T22:19:24.810229Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.810305Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.810349Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.810896Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811119Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811511Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814320Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814559Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T22:19:24.817560Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.817711Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:19:24.821002Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T22:19:24.822054Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T22:19:24.851644Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.851724Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.852276Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.852620Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.856107Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:19:24.857178Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T22:19:24.868774Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.869315Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.872301Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:19:24.901226Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.901314Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.901807Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.904931Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T22:19:24.909462Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.941337Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.105431Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.106038Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.108863Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T22:19:25.170219Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.086058Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.086831Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.089608Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T22:19:26.151000Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.816520Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.817160Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.820005Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T22:19:26.881324Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.047564Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.048055Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.051112Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T22:19:28.112002Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.176038Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.176552Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.179990Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T22:19:28.240912Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.241231Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.241440Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.241932Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.242533Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.246010Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:28.249338Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:28.274420Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:28.275332Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.275787Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.279400Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:28.280199Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.280268Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.280523Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.283534Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:28.312646Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.314170Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.314483Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.317538Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:28.378838Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.396981Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:38.623270Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:38.623270Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] 
[2026-06-08T22:19:38.623270Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:38.623346Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] 
[2026-06-08T22:19:38.623354Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:38.623362Z] [nf-7c1f0365e92a8c9e1eb3987a173396f4-3d072-mxgw4] [764_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec