Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/07b7b4f5579bd5a614924ab8b55f8d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6cac9572c59c95623b798b3d35c5c3/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/07b7b4f5579bd5a614924ab8b55f8d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:23.778118Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:23.780421Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:23.780446Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:23.780451Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:23.780455Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXKlbK5E'
[2026-06-08T22:19:23.780459Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:23.780465Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:23.780468Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:23.780472Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] memMb: 773429
[2026-06-08T22:19:23.780475Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:23.780479Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:23.780482Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:23.780486Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:23.780490Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:23.781336Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:23.781389Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:23.787490Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:23.788151Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:23.788304Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:23.788542Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:23.788725Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.789841Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.790075Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.790175Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.790871Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.790977Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.791172Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.791872Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.792040Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.792295Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.792417Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.792644Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.793990Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.794648Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.794806Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:23.794928Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.795094Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.795177Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.795314Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.795386Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.795719Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.796009Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.796210Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.796509Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.796633Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.796704Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.797153Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.797225Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.797346Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.797416Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.797559Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.797750Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.798220Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.798621Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.798762Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.798836Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.798958Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799027Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799149Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799217Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799341Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799407Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799526Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799596Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799770Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.799981Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.800519Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.800711Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801221Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801296Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801415Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801483Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801626Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801694Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801815Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.801885Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.802006Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.802079Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.802262Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.802862Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.803050Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.803601Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.803728Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.803800Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.818693Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.819980Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.820621Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.820679Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.820838Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.821043Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.821212Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.821540Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.821679Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.822049Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.822242Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.823780Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.824619Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.824773Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.825136Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.825633Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:23.826105Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:23.826367Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.826922Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.830628Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:23.832837Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:23.836794Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:23.838903Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:23.839309Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:23.842237Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:23.844376Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:23.910178Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:23.954207Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.954283Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.955039Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.955652Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:23.958607Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:23.959541Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:24.020521Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.021353Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.023864Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:24.085305Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.086146Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.088682Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:24.089681Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.090409Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.092982Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:24.154552Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.155908Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.158340Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:24.187722Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.187799Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.188530Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.189180Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.192417Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:24.193444Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:24.254285Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.255171Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.257968Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:24.369330Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.370145Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.372497Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:24.403161Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.403949Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.406868Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:24.468615Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.469471Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.472321Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:24.533637Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.534566Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.537147Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:24.949287Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.950004Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.952686Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:25.014477Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.015287Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.017798Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:25.079788Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.080845Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.084046Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:25.395940Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.396832Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.399691Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:25.461129Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.462235Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.465630Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:25.526869Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.528005Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.530669Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:25.592007Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.592781Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.595525Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:25.657010Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.657942Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.660711Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:25.690133Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.690215Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.690929Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.691215Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.694282Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:25.695081Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.695596Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:25.695966Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.698150Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:25.727876Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.727962Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.729126Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.729606Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.730282Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.731501Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.734646Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:25.735916Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:25.764031Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.764720Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.767537Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:25.879226Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.880065Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.883156Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:25.945079Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.945786Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.948373Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:25.977576Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.978277Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.980858Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:26.010293Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.010964Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.014031Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:26.125772Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.126714Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.129818Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:26.158663Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.159527Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.162426Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:26.191404Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.192287Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.194952Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:26.208146Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.209005Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.211713Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:26.240768Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.241396Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.244468Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:26.248984Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.249565Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.251982Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:26.281455Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.282127Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.284767Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:26.314227Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.315251Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.315543Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.317668Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.318169Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:26.320631Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:26.381731Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.382349Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.385385Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:26.596991Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.597584Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.600543Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:26.661847Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.662565Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.665703Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:26.726782Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.727666Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.738865Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:26.769177Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.770357Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.770645Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.771166Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.774340Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:26.775668Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:26.837344Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.837447Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.837949Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.841081Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:27.260886Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:27.303052Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.303147Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.303175Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.303695Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.304105Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.307104Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.307743Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:27.309336Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:27.310310Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:27.339921Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.339984Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.340025Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.804850Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.805585Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.808698Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:27.837725Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.901829Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.902488Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.905103Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:27.966556Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.131100Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.131607Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.133853Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:28.164524Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.378873Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.379654Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.382453Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:28.411688Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.411980Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.412152Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.412536Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.416460Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:28.416994Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.417558Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:28.419525Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:28.480991Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.481055Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.481079Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.481328Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.481951Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.484330Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:28.486899Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:28.516147Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.516242Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.516579Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.519231Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:28.548439Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.464077Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:34.339741Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:34.339741Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] 
[2026-06-08T22:19:34.339741Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:34.339812Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] 
[2026-06-08T22:19:34.339822Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:34.339831Z] [nf-4607b7b4f5579bd5a614924ab8b55f8d-51bba-7g7b9] [614_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec