Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/fe176e5f6bbf411e4664165acb8efc/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/d418a9ee96101ea3196d311c3a7ba0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/5f79ad87fde125a5d992a6d57d2311/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/5f79ad87fde125a5d992a6d57d2311/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vi8xd8f6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:45,229 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:46,018 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:46,185 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:47,065 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:47,227 - cnv_pipe.batch.run_model - INFO - Processing cluster 1257 with 159 probes
2026-06-08 22:24:47,596 - cnv_pipe.batch.run_model.cluster1257 - INFO - Child process started for cluster 1257 with 159 probes
2026-06-08 22:25:34,091 - cnv_pipe.batch.run_model.cluster1257 - INFO - Child process finished cluster 1257. Wrote cluster_1257_samples.csv and cluster_1257_params.csv
2026-06-08 22:25:34,092 - cnv_pipe.batch.run_model - INFO - Cluster 1257 finished in 46.87 seconds. Status: SUCCESS