Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/8c4ffa24a139575f1afce276755b85/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/ceed4bf612d62859d876f95d1d2d6f/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/ceed4bf612d62859d876f95d1d2d6f/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/8c4ffa24a139575f1afce276755b85/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:24.879590Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:24.880300Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:24.880310Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:24.880314Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:24.880318Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXvKEXet'
[2026-06-08T22:19:24.880322Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:24.880327Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:24.880330Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:24.880334Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:24.880338Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:24.880341Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:24.880345Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:24.880348Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:24.880352Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:24.880969Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:24.881065Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:24.887097Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:24.888089Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:24.888346Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:24.888710Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:24.888961Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889243Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889333Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889402Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889518Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889583Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889701Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889768Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889886Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.889950Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.890227Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.890572Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.890775Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.890888Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.891115Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.891472Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.891944Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.892226Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.895127Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.895656Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.895753Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.895900Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.896031Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:24.896383Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.896831Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897101Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897245Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897317Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897431Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897497Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897615Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897717Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897833Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.897898Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.898019Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.898087Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.898406Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.898678Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.898793Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.898865Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.898982Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.899044Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.899159Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.899327Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.899932Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.900285Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.900413Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.900478Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.900663Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.900735Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.900845Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.900908Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.901019Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.901080Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.901192Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.901405Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.901729Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.902252Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.902784Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.902852Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.902968Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.903029Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.903145Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.903229Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.903379Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.903449Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.903554Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.903614Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.915984Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.916080Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.916150Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.916313Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.916387Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.916472Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.917917Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.918084Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.918164Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.918217Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:24.928271Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.928987Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.939307Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.940705Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.943425Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.944750Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:19:24.944947Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.945675Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.948541Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:24.949124Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.950045Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.953931Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:19:24.957079Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:19:24.961637Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:19:24.964052Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:24.966720Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:19:24.968487Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:25.067970Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.069283Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.077033Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:19:26.140101Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.140986Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.145026Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:19:26.864491Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.865417Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.868849Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:19:26.930081Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.930882Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.934688Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:19:27.296423Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.297348Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.300737Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:27.362298Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.363426Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.367061Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:27.428413Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.429270Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.432638Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:19:27.493795Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.494921Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.498450Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:19:27.559568Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.560435Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.564106Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:27.675335Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.675425Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.676233Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.677080Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.680387Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:19:27.681984Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:19:27.741545Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.742431Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.746163Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:19:27.758935Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.759038Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.759768Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.760087Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.764718Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:28.076415Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.077617Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.081210Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:19:28.110400Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.111496Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.115423Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:19:28.128079Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.129054Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.132372Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:19:28.193596Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.194439Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.198440Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:19:29.011107Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.012104Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.015379Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:19:29.076998Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.078060Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.082353Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:29.444970Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.445928Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.449548Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:19:29.510846Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.511732Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.515677Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:19:29.577090Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.578089Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.581489Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:19:29.643056Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.644110Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.648401Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:19:30.261224Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.262071Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.266197Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:19:30.327265Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.328234Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.331755Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:30.363373Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:30.393160Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.393371Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.394113Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.394838Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.398721Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:19:30.400710Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:30.911687Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.912547Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.916393Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:19:30.978157Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.979015Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.982866Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:19:31.144404Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.145316Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.148864Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:19:31.210557Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.212068Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.215844Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:19:31.337979Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.338786Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.342169Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:19:31.355357Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.356151Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.359619Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:19:31.672259Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.673110Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.677071Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:19:31.738615Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.739332Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.743676Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:19:31.804218Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.804349Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.805086Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.807236Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.808381Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:19:31.811109Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:19:31.872193Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.872330Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.873018Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.873857Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.877377Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:19:31.878740Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:19:31.882505Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.883427Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.886391Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:19:31.915716Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.916377Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.920115Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:19:31.932618Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.933410Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.936651Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:31.966050Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.966906Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.970382Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:19:32.031502Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.032182Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.035748Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:19:32.097161Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.098092Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.101184Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:19:32.162578Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.162678Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.163478Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.165744Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.167036Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:19:32.169778Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:19:32.231035Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.231153Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.231905Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.232421Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.236534Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:32.237972Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:19:32.297777Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.298437Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.301944Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:19:32.363023Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.577972Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.578626Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.582187Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:19:32.643847Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.808576Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.809165Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.812906Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:19:32.873967Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.881813Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.882312Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.885912Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:32.947557Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.948196Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.951333Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:19:33.013072Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.029614Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.030151Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.033899Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:19:33.094492Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.209085Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.209633Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.212705Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:19:33.274214Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.940969Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.941510Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.945179Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:19:34.006375Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.022466Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.022953Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.026034Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:19:34.087883Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.088236Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.088448Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.089131Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.089860Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.095150Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.096138Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:34.098635Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:34.156698Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.156808Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.156839Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.157218Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.157939Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.161453Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.162359Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:34.224117Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.224216Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.224480Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.227561Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:34.289515Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.457153Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:43.768943Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:43.768943Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] 
[2026-06-08T22:19:43.768943Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:43.769043Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] 
[2026-06-08T22:19:43.769049Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:43.769056Z] [nf-e08c4ffa24a139575f1afce276755b85-c2b17-wlxjs] [614_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec